A guided tour of the Trans-Proteomic Pipeline
dc.contributor.author | Deutsch, Eric W. | en_US |
dc.contributor.author | Mendoza, Luis | en_US |
dc.contributor.author | Shteynberg, David | en_US |
dc.contributor.author | Farrah, Terry | en_US |
dc.contributor.author | Lam, Henry | en_US |
dc.contributor.author | Tasman, Natalie | en_US |
dc.contributor.author | Sun, Zhi | en_US |
dc.contributor.author | Nilsson, Erik | en_US |
dc.contributor.author | Pratt, Brian | en_US |
dc.contributor.author | Prazen, Bryan | en_US |
dc.contributor.author | Eng, Jimmy K. | en_US |
dc.contributor.author | Martin, Daniel B. | en_US |
dc.contributor.author | Nesvizhskii, Alexey I. | en_US |
dc.contributor.author | Aebersold, Ruedi | en_US |
dc.date.accessioned | 2010-04-14T20:03:12Z | |
dc.date.available | 2011-03-01T16:26:44Z | en_US |
dc.date.issued | 2010-03 | en_US |
dc.identifier.citation | Deutsch, Eric W.; Mendoza, Luis; Shteynberg, David; Farrah, Terry; Lam, Henry; Tasman, Natalie; Sun, Zhi; Nilsson, Erik; Pratt, Brian; Prazen, Bryan; Eng, Jimmy K.; Martin, Daniel B.; Nesvizhskii, Alexey I.; Aebersold, Ruedi (2010). "A guided tour of the Trans-Proteomic Pipeline." PROTEOMICS 10(6): 1150-1159. <http://hdl.handle.net/2027.42/69180> | en_US |
dc.identifier.issn | 1615-9853 | en_US |
dc.identifier.issn | 1615-9861 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/69180 | |
dc.description.abstract | The Trans-Proteomic Pipeline (TPP) is a suite of software tools for the analysis of MS/MS data sets. The tools encompass most of the steps in a proteomic data analysis workflow in a single, integrated software system. Specifically, the TPP supports all steps from spectrometer output file conversion to protein-level statistical validation, including quantification by stable isotope ratios. We describe here the full workflow of the TPP and the tools therein, along with an example on a sample data set, demonstrating that the setup and use of the tools are straightforward and well supported and do not require specialized informatic resources or knowledge. | en_US |
dc.format.extent | 46513 bytes | |
dc.format.extent | 3118 bytes | |
dc.format.mimetype | application/pdf | |
dc.format.mimetype | text/plain | |
dc.publisher | WILEY-VCH Verlag | en_US |
dc.subject.other | Life and Medical Sciences | en_US |
dc.title | A guided tour of the Trans-Proteomic Pipeline | en_US |
dc.type | Article | en_US |
dc.rights.robots | IndexNoFollow | en_US |
dc.subject.hlbsecondlevel | Biological Chemistry | en_US |
dc.subject.hlbsecondlevel | Chemical Engineering | en_US |
dc.subject.hlbsecondlevel | Chemistry | en_US |
dc.subject.hlbsecondlevel | Materials Science and Engineering | en_US |
dc.subject.hlbsecondlevel | Molecular, Cellular and Developmental Biology | en_US |
dc.subject.hlbtoplevel | Health Sciences | en_US |
dc.subject.hlbtoplevel | Science | en_US |
dc.subject.hlbtoplevel | Engineering | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.contributor.affiliationum | Department of Pathology and Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA ; Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA Fax: +1-206-732-1260 | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, P. R. China | en_US |
dc.contributor.affiliationother | Insilicos, LLC, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Insilicos, LLC, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Insilicos, LLC, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Insilicos, LLC, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Department of Genome Sciences, University of Washington, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA | en_US |
dc.contributor.affiliationother | Institute for Systems Biology, Seattle, WA, USA ; Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland ; Faculty of Sciences, University of Zurich, Zurich, Switzerland ; Center for Systems Physiology and Metabolic Diseases, Zurich, Switzerland | en_US |
dc.identifier.pmid | 20101611 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/69180/1/pmic_200900375_sm_SupplInfo.pdf | |
dc.identifier.doi | 10.1002/pmic.200900375 | en_US |
dc.identifier.source | PROTEOMICS | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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