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- Creator:
- Ahluwalia, Vinayak S., Steimle, Lauren N., and Denton, Brian T.
- Description:
- This repository includes test instances of infinite-horizon Markov decision processes with multiple models of parameters (i.e., "Multi-model Markov decision processes"). We generated each test instance in the dataset using a Python script. The test instances can be read in using the provided C++ and Python script. See the README for details.
- Keyword:
- Markov decision processes, mixed-integer programming, stochastic programming, and dynamic programming
- Citation to related publication:
- Ahluwalia, Steimle, and Denton. "Policy-based branch-and-bound for infinite-horizon Multi-model Markov decision processes". 2020.
- Discipline:
- Engineering
- Title:
- Dataset of test instances of Markov decision processes with multiple models
-
- Creator:
- Hatch, Nan E.
- Description:
- Craniosynostosis is the premature fusion of cranial bones. The goal of this study was to determine if delivery of recombinant tissue nonspecific alkaline phosphatase (TNAP) could prevent or diminish the severity of craniosynostosis in a C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis or a BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis. Mice were injected with a lentivirus encoding a mineral targeted form of TNAP immediately after birth. Cranial bone fusion as well as cranial bone volume, mineral content and density were assessed by micro computed tomography. Craniofacial shape was measured with calipers., Alkaline phosphatase, alanine amino transferase (ALT) and aspartate amino transferase (AST) activity levels were measured in serum. Neonatal delivery of TNAP diminished craniosynostosis severity from 94% suture obliteration in vehicle treated mice to 67% suture obliteration in treated mice, p<0.02) and the incidence of malocclusion from 82.4% to 34.7% (p<0.03), with no effect on cranial bone in C57BL/6 FGFR2C342Y/+ mice. In contrast, treatment with TNAP improved cranial bone volume (p< 0.01), density (p< 0.01) and mineral content (p< 0.01) but had no effect on craniosynostosis or malocclusion in BALB/c FGFR2C342Y/+ mice. , These results indicate that post-natal recombinant TNAP enzyme therapy diminishes craniosynostosis severity in the C57BL/6 FGFR2C342Y/+ neonatal onset mouse model of Crouzon syndrome, and that effects of exogenous TNAP are genetic background dependent., and Included in this collection is one set of images representing the C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis, and one for the BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis
- Keyword:
- craniofacial, bone, craniosynostosis, FGFR2, TNAP, mouse model, and development
- Discipline:
- Health Sciences
2Works -
- Creator:
- Hatch, Nan E.
- Description:
- Crouzon FGFR2-C342Y/+ and wild type littermate pups on a C57BL/6 congenic background were injected with lentivirus expressing recombinant TNAP enzyme or phosphate buffered saline shortly after birth. Mice were euthanized 3 weeks after birth for analyses.
- Keyword:
- craniofacial, bone, craniosynotosis, FGFR2, TNAP tissue nonspecific alkaline phosphatase, mouse model, and development
- Discipline:
- Health Sciences
- Title:
- FGFR2-C342Y/+ and FGFR2+/+ Treated with/without Tissue Nonspecific Alkaline Phosphatase (TNAP) Mouse Skulls: C57B:6 strain 3 weeks postnatal
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Raw - Dataset includes 1601 TIF images (each 2000 x 2000 x 1 voxel at 0.0327439804971583 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Reconstructed - Dataset includes 1240 TIF images (each 2000 x 2000 x 1 voxel at 0.032744 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
- Discipline:
- Science
- Title:
- Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-WholeBody
-
- Creator:
- Keppel-Aleks, Gretchen and Liptak, Jessica
- Description:
- -CESM_bdrd _NEP_pulse_response_CO2.nc contains time series from the ‘FullyCoupled’ simulation -CESM_bdrcs_NEP_pulse_response_CO2.nc contains time series from the ‘NoRad’ simulation -CESM_bdrd_pftcon_NEP_pulse_response_CO2.nc contains data from the ‘NoLUC’ simulation -CESM_bdrd_Regional_Fluxes_NEP.nc contains NEP time series for each terrestrial source region from the FullyCoupled simulation - CESM_bdrcs_Regional_Fluxes_NEP.nc contains NEP time series for each terrestrial source region from the CESM ‘NoRad’ simulation - CESM_bdrd_pftcon_Regional_Fluxes_NEP.nc contains NEP time series for each terrestrial source region from the CESM ‘NoLUC’ simulation The 3-letter station IDs, latitudes, and longitudes of the sample locations are: ID Latitude (ºN) Longitude (ºE) 1. BRW 71.3 203.4 2. ZEP 78.9 11.9 3. SHM 52.7 174.1 4. THD 41.1 235.8 5. TAP 36.7 126.1 6. BMW 32.3 295.1 7. MLO 19.5 204.4 8. POCN15 15.0 215.0 9. ALT 82.5 297.5 10. BHD -41.4 174.9 11. EIC -27.2 250.6 12. GMI 13.4 144.7 13. HUN 47.0 16.7 14. IZO 28.3 343.5 15. LLN 23.5 120.9 16. NAT -5.8 324.7 17. WLG 36.3 100.9 18. HBA -75.6 333.8 19. BKT -0.20 100.3 20. UUM 44.5 111.1 21. CGO -40.7 144.5 22. SDZ 40.7 117.1 23. ASC -8.0 345.6 24. SEY -4.7 55.5 25. POCS20 -20.0 186.0 26. POCS35 -35.0 180.0 27. PSA -64.9 296.0 28. SYO -69.0 39.6 29. CHR 1.7 202.8 30. KEY 25.7 279.8 31. BAL 55.4 17.2 32. HPB 47.8 11.0 33. LMP 35.5 12.6 34. NMB -23.6 15.0 35. RPB 13.2 300.2 36. WIS 30.0 35.1 37. POCS10 -10.0 199.0 38. POCN10 10.0 211.0 39. MID 28.2 182.6 40. SMO -14.2 189.4 41. SPO -90.0 335.2 The terrestrial CO2 source region abbreviations are: 1. NBNA 2. SBNA 3. ETNA 4. WTNA 5. CNAM 6. AMZN 7. EASA 8. WESA 9. EURO 10. SAME 11. MDAF 12. AFRF 13. SOAF 14. EABA 15. WEBA 16. SOBA 17. CNAS 18. SEAS 19. EQAS 20. AUST 21. GNLD 22. ATCA
- Keyword:
- atmospheric CO2 annual cycle amplitude and CESM extended concentration pathway
- Citation to related publication:
- 10.5194/bg-14-1-2017
- Discipline:
- Science
- Title:
- Atmospheric CO2 time series derived from CESM NEP and GEOS-Chem pulse response CO2
-
- Creator:
- Heath, Jeffrey
- Description:
- These are documentaries made in the course of linguistic fieldwork in central Mali. Most are presented here in three different video formats. All of those in the present group are of Dogon people. Beni village near Douentza figures in many of them. "Cooked spiced millet with roselle leaves" and "steamed cowpeas with millet" are from Walo village. "Cream of millet with tamarind" is from Bendiely village. "Beer brewing" is from Yanda village. "Groundnuts roasted and boiled" is from near Sévaré. "Macari" is from Kowo village near Sévaré. See also the separate works "Central Mali agriculture documentaries" and "Central Mali herding and dairy documentaries".
- Keyword:
- Mali, Dogon, food preparation, and beer brewing
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali food and drink preparation documentaries
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos produced in the course of linguistic fieldwork. Most are presented here in three different video formats. "Gardening Diondiori" illustrates dry-season farming mostly of cash crops using ground water (springs, drying ponds and rivers, underground water sources). The other videos in this block are of ordinary rainwater agriculture done in the rainy season, featuring Dogon people and, in the case of "Rice harvest and threshing," Bangande (speakers of Bangime), who have the same agricultural methods. The principal rainy season crop in the zone is millet (Cenchrus spicatus), but most of the documentaries here are about secondary crops (cowpea, fonio, groundnut, peanut, groundnut, roselle, rice, sesame, sweet potato). "Driving off grain-eating birds" is based on an unsteady cellphone video brought to us, except for the final segments which we shot.
- Keyword:
- Mali, Dogon, and agriculture
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali agriculture documentaries
-
- Creator:
- Heath, Jeffrey
- Description:
- Documentaries about festivals (some annual, some less often) and ceremonial events, filmed in the course of linguistic fieldwork in central Mali. Those relating to Dogon are: Bamba fishfest 2010; Degeju festival at Yendouma 2012; Dogon cowfest at Pergue 2011; Ginna Dogon 2011 Bandiagara; Koira Bery festival 2010; Songho circumcision 2010; Tomtoms of Tupere; and Yanda huntfest 2010. Bangande (speakers of Bangime) are represented in Tabaski at Bounou (the Muslim feast of the ram). Fulbe are represented in Cowfest at Bamguel 2011 (cowfests are a Fulbe specialty, but the Dogon of Pergue have their own). Songhay is represented by Coronation at Hombori 2011 (the enthronment or "intronisation" of a new king of Hombori). Videos are available in multiple formats.
- Keyword:
- Mali, Dogon, Songhay, Fulbe, and Bangande
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali cultural event documentaries
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos done in the course of linguistic fieldwork in Central Mali. They are presented here in two or three video formats. The videos show how Dogon villagers press oil from nuts and fruit pits, make liquid soda ash (French potasse), and make soap. Some are in standard documentary form, some early ones ("compendiums") are sequences of brief clips. Most were made in Beni village or in the Douentza area.
- Keyword:
- Mali, Dogon, vegetable oils, soapmaking, and soda ash
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali oils soaps and soda-ash documentaries
-
- Creator:
- Heath, Jeffrey
- Description:
- This is the flora-fauna lexical material obtained in the course of more general lexical and grammatical fieldwork on languages of central-eastern Mali (Dogon, Songhay, Bangime, Bozo). The spreadsheets in this work, duplicated in xlsx and csv formants, present our flora-fauna lexicons as of early 2019 for many languages of central-eastern Mali, and certain languages of southwestern Burkina Faso. The Malian data is in two spreadsheets (flora, fauna), while the Burkina data is in separate spreadsheets for flora, birds, fish, insects, lizards and snakes, and mammals. Please begin with the “readme” document.
- Keyword:
- flora,, fauna, lexicon, Mali, and Burkina Faso
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. https://dogonlanguages.org and Christfried Naumann & Tom Güldemann & Steven Moran & Guillaume Segerer & Robert Forkel (eds.) 2015. Tsammalex: A lexical database on plants and animals. Leipzig: Max Planck Institute for Evolutionary Anthropology. https://tsammalex.clld.org
- Discipline:
- Humanities
- Title:
- West African flora and fauna native terminologies
-
- Creator:
- Heath, Jeffrey
- Description:
- These videos were shot in Dogon villages. They show how wild foods (insects and plants) are obtained and consumed. Most are presented here in three video formats.
- Keyword:
- Mali, Dogon, honey, edible insects, and water lilies
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali hunting and collecting documentaries
-
- Creator:
- Heath, Jeffrey , Ouattara, Aminata , and Hantgan, Abbie
- Description:
- Our project, mainly on Dogon languages of Mali, has branched out to Burkina Faso with emphasis on documentation of the most endangered languages. Tiefo-N was studied on an emergency basis since it was down to two aging competent speakers. For additional comments and links to a reference grammar, see the readme file.
- Keyword:
- Gur languages, Tiefo, Tiefo-N language, and Lexicon
- Citation to related publication:
- Jeffrey Heath, Aminata Ouattara & Abbie Hantgan. Short grammar of Tiefo-N of Nyafogo (Gur, Burkina Faso). Language Description Heritage Library (MPI). http://ldh.clld.org/2017/01/01/escidoc2378140/ and A copy of this publication is also available in Deep Blue: http://dx.doi.org/10.17617/2.2378140
- Discipline:
- Humanities
- Title:
- Lexical documents Tiefo-N language of Burkina Faso
-
- Creator:
- Heath, Jeffrey
- Description:
- Jalkunan is an endangered language of the Mande family, spoken in the village cluster of Blédougou in southwestern Burkina Faso. The lexical work complements a published grammar with texts. See the readme for further information.
- Keyword:
- Jalkunan, Burkina Faso, Mande languages, and Lexicon
- Citation to related publication:
- Heath, Jeffrey. A grammar of Jalkunan (Mande, Burkina Faso). 2017. http://hdl.handle.net/2027.42/139025
- Discipline:
- Humanities
- Title:
- Lexical spreadsheets Jalkunan language of Burkina Faso
-
- Creator:
- Heath, Jeffrey, Hantgan, Abbie , and Elders, Stefan
- Description:
- The work on the Bangime language, spoken by the Bangande people, was carried out as part of a larger linguistic fieldwork project focused on Dogon languages. Bangime is confirmed as a language isolate with no demonstrable linguistic relatives—possibly the only such isolate in West Africa.
- Keyword:
- Bangime, Mali, and Lexicon
- Citation to related publication:
- Heath & Hantgan. A grammar of Bangime. Berlin: de Gruyter, 2018. ISBN 978-3-11-055749-7
- Discipline:
- Humanities
- Title:
- Lexical spreadsheets Bangime language of Mali
-
- Creator:
- Heath, Jeffrey
- Description:
- These videos were produced in the course of linguistic fieldwork in central Mali. They are presented here in multiple video formats. The cattle herders par excellence in the zone are traditional Fulbe, who enter towns and Dogon villages to sell fresh and curdled milk along with butter.
- Keyword:
- Mali, Fulbe, cattle herding, and curdled milk
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Central Mali herding and dairy documentaries
-
- Creator:
- Heath, Jeffrey
- Description:
- Holistic linguistic fieldwork carried out on location in central-eastern Mali.
- Keyword:
- Lexicon, Mali, and Dogon
- Discipline:
- Humanities
- Title:
- Lexical spreadsheet comparative Dogon
-
- Creator:
- Johnson, Jena E., Webb, Samuel M., Condit, Cailey B., Beukes, Nicolas J., and Fischer, Woodward W.
- Description:
- Manganese in the sedimentary record has been interpreted by many as a powerful redox proxy for paleoenvironments, and yet very little work has been done to ensure that the manganese-rich minerals in the rock record are actually recording primary signals. In the accompanying manuscript, we present an in-depth characterization of the manganese mineralogy from two correlated regions recording the Transvaal Supergroup in South Africa with markedly different alteration histories to investigate if there can be post-depositional emplacement of manganese-rich minerals. The data uploaded here are X-ray absorption spectra of (1) manganese standard minerals that were useful in our analyses and (2) minerals from an important well-characterized sample that may be useful as comparative standards in future studies.
- Keyword:
- manganese and X-ray absorption spectroscopy
- Citation to related publication:
- J.E. Johnson, S.M. Webb, C.B. Condit, N.J. Beukes, W.W. Fischer; Effects of metamorphism and metasomatism on manganese mineralogy: Examples from the Transvaal Supergroup. South African Journal of Geology doi: https://doi.org/10.25131/sajg.122.0034
- Discipline:
- Science
- Title:
- Dataset related to 'Effects of Metamorphism and Metasomatism on Manganese Mineralogy: Examples from the Transvaal Supergroup'
-
- Creator:
- Blesh, Jennifer and King, Alison E.
- Description:
- This dataset contains three data files used in: King, A.E. and J. Blesh, 2017. Crop rotations for increased soil carbon: perenniality as a guiding principle. Ecological Applications. There are also three corresponding metadata files. The file “CRMA 2017 Main.csv” contains data for the control and treatment rotations used to construct pairwise comparisons for meta-analysis, response ratios calculated for soil organic carbon concentration, and change in carbon input. The dataset also includes management, soil, and other environmental characteristics for each site. The file “CRMA 2017 Diversity x Nitrogen.csv” contains data used to test whether N fertilizer inputs mediated the effect of functional diversity on SOC concentrations. The file “CRMA Annual grain.csv” contains data used to test for effects of crop rotation species diversity (one vs. two species, or two vs. three species) on SOC concentrations and C input (i.e., for the “grain-only” rotations). The dataset also includes management, soil, and other environmental characteristics for each site. The corresponding metadata files: “CRMA 2017 Main_metadata.csv”, “CRMA 2017 Diversity x Nitrogen_metadata.csv”, and “CRMA Annual grain _metadata.csv” provide a detailed description of all variables in each dataset. Note: On Jan 12, 2018 the following information was added to the three metadata files: the name of the data file the metadata refers to, an explanation as to the meaning of blank cells in the data file, a full citation to the paper where the author describes her findings and contact information for the author.
- Keyword:
- soil carbon, functional diversity, meta-analysis, and cropping system
- Citation to related publication:
- King, A. E. and Blesh, J. (2018), Crop rotations for increased soil carbon: perenniality as a guiding principle. Ecol Appl, 28: 249–261. https://doi.org/10.1002/eap.1648
- Discipline:
- Science
- Title:
- Crop rotations for increased soil carbon: perenniality as a guiding principle
-
- Creator:
- Ward, Jamie L., Flanner, Mark G., Bergin, Mike, Dibb, Jack E., Polashenski, Chris M., Soja, Amber J., Thomas, Jennie L.
- Description:
- Biomass burning produces smoke aerosols that are emitted into the atmosphere. Some smoke constituents, notably black carbon (BC), are highly effective light-absorbing aerosols (LAA). Emitted LAA can be transported to high albedo regions like the Greenland Ice Sheet (GrIS) and affect local snowmelt. In the summer, the effects of LAA in Greenland are uncertain. To explore how LAA affect GrIS snowmelt and surface energy flux in the summer, we conduct idealized global climate model simulations with perturbed aerosol amounts and properties in the GrIS snow and overlying atmosphere. The in-snow and atmospheric aerosol burdens we select range from background values measured on the GrIS to unrealistically high values. This helps us explore the linearity of snowmelt response and to achieve high signal-to-noise ratios. With LAA operating only in the atmosphere, we find no significant change in snowmelt due to the competing effects of surface dimming and tropospheric warming. Regardless of atmospheric LAA presence, in-snow BC-equivalent mixing ratios greater than ~60 ng/g produce statistically significant snowmelt increases over much of the GrIS. We find that net surface energy flux changes correspond well to snowmelt changes for all cases. The dominant component of surface energy flux change is solar energy flux, but sensible and longwave energy fluxes respond to temperature changes. Atmospheric LAA dampen the magnitude of solar radiation absorbed by in-snow LAA when both varieties are simulated. In general, the significant melt and surface energy flux changes we simulate occur with LAA quantities that have never been recorded in Greenland.
- Keyword:
- climate, Greenland Ice Sheet, black carbon, biomass burning, snowmelt, and surface energy balance
- Citation to related publication:
- Ward, J.L., et al. (2018). Modeled Response of Greenland Snowmelt to the Presence of Biomass Burning-Based Absorbing Aerosols in the Atmosphere and Snow. Journal of Geophysical Research: Atmospheres.
- Discipline:
- Science
- Title:
- Data in support of the study "Modeled Response of Greenland Snowmelt to the Presence of Biomass Burning-Based Absorbing Aerosols in the Atmosphere and Snow"
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Toro So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Toro So, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Toro So-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Bunoge is a Dogon language spoken in Boudou and two neighboring villages in central Mali. These texts were recorded in the original Boudou village (perched on a peak) in 2015. The content of the texts is: 2015-01 greetings and initial conversations; 2015-02 history of Boudou, part 1; 2015-03 history of Boudou, part 2; 2015-04 farming methods; 2015-05 carts and gardening; 2015-06 gardening; 2015-07 wells, road, and school; 2015-08 tale; 2015-09 tale. Heath, A grammar of Bunoge, is electronically published (2017) at Language Description Heritage Library http://ldh.clld.org/2017/03/01/escidoc2417511/ with backup copy at Deep Blue documents. http://hdl.handle.net/2027.42/139023 DOI is 10.17617/2.2417511 At the end of the grammar are formatted transcriptions/translations of 2015-02, 2015-03, 2015-05, 2015-08, and 2015-09. The remaining texts (2015-01, 2015-04, 2015-06, and 2015-07) have not been transcribed as of May 2018. I grant permission to other scholars to transcribe, translate, and/or analyse these texts.
- Keyword:
- Bunoge Boudou, Dogon, Mali, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogon Bunoge Boudou Audio Files
-
- Creator:
- Heath, Jeffrey
- Description:
- Yorno So is the variety of the Toro So subgroup of the Dogon language family. It is spoken in the Yendouma village cluster along the base of cliffs on the eastern side of the Dogon (Bandiagara) plateau in east-central Mali. It is not yet completely clear whether it is best described as a dialect of Toro So (which also includes Sangha So, Ibi So, and other varieties), or as a separate language. As of May 2018 my opinion is that it is a dialect. A grammar of Yorno So was published electronically at Language Description Heritage Library in 2017. http://ldh.clld.org/2017/09/01/escidoc2326768-2/ This is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139021. An excerpt of this document that includes a transcription and an English translation of audio files texts 1-6 is included in this dataset. Texts 07, 08, and 09 have not yet been transcribed. I give permission to other linguists to transcribe, translate, and/or analyze those texts.
- Keyword:
- Toro So, Yorno So, Dogon, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org and Heath, Jeffrey. A grammar of Yorno So (Toro So subgroup of Dogon, Mali). Page 532 - 637. http://hdl.handle.net/2027.42/139021.
- Discipline:
- Humanities
- Title:
- Dogon Toro So (Yorno So) Audio Files
-
- Creator:
- Heath, Jeffrey
- Description:
- images of villages in Mali in which Najamba Kindige (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Najamba, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Najamba-Kindige-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Jalkunan is a small-population Mande language spoken in Blédougou village cluster in the Banfora plateau in SW Burkina Faso.A grammar was published electronically at Language Description Heritage Library in 2017. http://ldh.clld.org/2017/01/01/escidoc2346932/ This is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139025 http://dogonlanguages.org/other#mande Seven texts were recorded digitally in 2016 and are archived here. Three of them (texts 1, 2, and 4) were transcribed and translated at the end of the published grammar. The remaining tapes are not transcribed as of May 2018. I give permission to other linguists to transcribe, translate, and/or analyse the remaining texts.
- Keyword:
- Jalkunan, Mande, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Mande Jalkunan Audio Files
-
- Creator:
- Tye, Alexander R, Wolf, Aaron S, and Niemi, Nathan A
- Description:
- Detrital zircon age distributions provide robust insights into past sedimentary systems, but these age distributions are often complex and multi-peaked, with sample sizes too small to confidently resolve population distributions. This limited sampling hinders existing quantitative methods for comparing detrital zircon age distributions, which show systematic dependence on the sizes of compared samples. The proliferation of detrital zircon studies motivates the development of more robust quantitative methods. We present the first attempt, to our knowledge, to infer probability model ensembles (PMEs) for samples of detrital zircon ages using a Bayesian method. Our method infers the parent population age distribution from which a sample is drawn, using a Monte Carlo approach to aggregate a representative set of probability models that is consistent with the constraints that the sample data provide. Using the PMEs inferred from sample data, we develop a new estimate of correspondence between detrital zircon populations called Bayesian Population Correlation (BPC). Tests of BPC on synthetic and real detrital zircon age data show that it is nearly independent from sample size bias, unlike existing correspondence metrics. Robust BPC uncertainties can be readily estimated, enhancing interpretive value. When comparing two partially overlapping zircon age populations where the shared proportion of each population is independently varied, BPC results conform almost perfectly to expected values derived analytically from probability theory. This conformity of experimental and analytical results permits direct inference of the shared proportions of two detrital zircon age populations from BPC. We provide MATLAB scripts to facilitate the procedures we describe.
- Keyword:
- provenance, statistics, zircon, Bayesian, detrital, and density estimation
- Discipline:
- Science
- Title:
- Bayesian Population Correlation: A probabilistic approach to comparing detrital zircon age distributions
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali (and a few in Burkina) in which Jamsay (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Ampari, and Mali
- Citation to related publication:
- dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Ampari-speaking (Dogon, Mali) village photos
-
- Creator:
- Blesh, Jennifer
- Description:
- This dataset contains three data files used in: Blesh, J. 2017. Functional traits in cover crop mixtures: biological nitrogen fixation and multifunctionality. Journal of Applied Ecology. There are also three corresponding metadata files. The file “Ecosystem_functions_soil_species.csv” contains data organized by farm, treatment, replicate block, and species combining the fall and spring sampling time points. These data include aboveground biomass, nitrogen and carbon content, and biological nitrogen fixation for the plant species. The dataset also includes measured soil characteristics for each farm site. The file “Ecosystem_functions_soil_treatment.csv” contains data organized by farm, treatment, and replicate block for the fall and spring sampling time points combined. These data include aboveground biomass, nitrogen and carbon content, and biological nitrogen fixation aggregated by treatment. The dataset also includes measured soil characteristics for each farm site. The file “Traits_unstandardized.csv” contains individual plant trait data, a subset of which were used to calculate an index of functional diversity after they were standardized to have zero mean and unit variance. These data are organized by farm, treatment, replicate block, and species. The corresponding metadata files: “Ecosystem_functions_soil_species_metadata.csv”, “Ecosystem_functions_soil_treatment_metadata.csv”, and “Traits_unstandardized_metadata.csv” provide a detailed description of all variables in each dataset and any abbreviations used. Note: On Dec 19th 2017, the format of the files was changed to csv to aid preservation. The following information was added to the three metadata files: the name of the data file the metadata refers to, an explanation as to the meaning of blank cells in the data file, a full citation to the paper where the author describes her findings and contact information for the author.
- Keyword:
- agroecology, biological nitrogen fixation, functional diversity, and cover crop
- Citation to related publication:
- Blesh J. Functional traits in cover crop mixtures: Biological nitrogen fixation and multifunctionality. J Appl Ecol. 2018;55:38–48. https://doi.org/10.1111/1365-2664.13011
- Discipline:
- Science
- Title:
- Data from: Functional traits in cover crop mixtures: biological nitrogen fixation and multifunctionality
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bozo Jenama (Mande family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Mande, Bozo Jenama, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Bozo Jenama-speaking (Mande, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali (and a few in Burkina) in which Jamsay (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Mali, Dogon, Jamsay, and villages
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Jamsay-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Atlantic Fulfulde is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Fulfulde, villages, Atlantic Fulfulde, and Mali
- Citation to related publication:
- dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Atlantic Fulfulde-speaking (Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Humburi Senni (Songhay family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Songhay, Humburi Senni, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Humburi Senni-speaking (Songhay, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tommo So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tommo So, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Tommo So-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Dogul Dom (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Dogul Dom, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogul Dom-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Toro Tegu (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Toro Tegu, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Toro Tegu-speaking (Dogon, Mali) village photos
-
- Creator:
- Foltynek, Tomas, Ruas, Terry, Scharpf, Philipp , Meuschke, Norman, Schubotz, Moritz , Grosky, William , and Gipp, Bela
- Description:
- This data set is comprised of multiple folders. The corpus folder contains raw text used for training and testing in two splits, "document" and "paragraph". The Spun documents and paragraphs are generated using the SpinBot tool ( https://spinbot.com/API). The paragraph split is generated by only selecting paragraphs with 3 or more sentences in the document split. Each folder is divided in mg (i.e., machine generated through SpinBot) and og (i.e., original generated file), The human judgement folder contains the human evaluation between original and spun documents (sample). It also contains the answers (keys) and survey results. , The models folder contains the machine learning classifier models for each word embedding technique used (only for document split training). The models were exported using pickle (Python 3.6). The grid search for hyperparameter adjustments is described in the paper. , and The vector folders (train and test) contains the average of all word vectors for each document and paragraph. Each line has the number of dimensions of the word embeddings technique used (see paper for more details) followed by its respective class (i.e, label mg or og). Each file belong to one class, either "mg" or "og". The values are comma-separated (.csv). The extension is .arff can be read as a normal .txt file.
- Keyword:
- paraphrase detection, plagiarism detection, document classification, and word embeddings
- Citation to related publication:
- Discipline:
- General Information Sources
- Title:
- Detecting Machine-obfuscated Plagiarism
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Penange (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Penange, Dogon, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Penange-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- images of villages in Mali in which Mombo (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Mombo, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Mombo-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Yanda Dom (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Yanda Dom, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Yanda Dom-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Donno So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Donno So, Kamma So, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Donno So (Kamma So)-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tomo Kan(Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tomo Kan, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Tomo Kan-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Nanga (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Nanga, Dogon, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Nanga-speaking (Dogon Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Ben Tey (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Ben Tey, and Mali
- Citation to related publication:
- dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Ben Tey-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- images of villages in Mali in which Bangime is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Mali, Bangime, and villages
- Citation to related publication:
- http://dogonlanguages.org/
- Discipline:
- Humanities
- Title:
- Bangime-speaking (Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Donno So is a Dogon language spoken over a wide area on the Dogon (Bandiagara) plateau, mainly between Bandiagara and the eastern edge of the plateau. It is also called Kamma So. A grammar was published electronically at Language Description Heritage Library in 2016: and http://ldh.clld.org/2016/07/01/escidoc2491630-3 This is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/123062Thirteen texts were recorded digitally in Wendekele village south of Bandiagara in approximately 2015. Because of equipment problems the texts are rather faint and difficult to transcribe. Five texts were transcribed and translated, and presented at the end of the grammar volume. The correspondences are these: Published volume: text 1, Recording: DS 02, title: hare and other animals (tale); text 2, DS 09, report on trip to Burkina; text 3, DS 10, blacksmith; text 4, DS 03, squirrel and hare (tale); text 5, DS 11, Fulbe herders. Recordings DS 01(tale of stepmother), 04 (farming), 05 (construction),06 (animals), 07 (hunting), 08 (herding), 12 (marriage), and 13 (korobasinging) are not transcribed as of May 2018. I grant permission to other linguists to transcribe, translate, and/or analyse them.
- Keyword:
- Donno So, Dogon, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogon Donno So Audio Files
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bankan Tey (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Bankan Tey, and Mali
- Citation to related publication:
- dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Bankan Tey-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tamashek (Berber family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Tamashek, villages, Berber, and Mali
- Citation to related publication:
- dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Tamashek-speaking (Berber, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tiranige (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tiranige, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Tiranige-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Najamba is spoken chiefly in villages on the edges of low cliffs flanking a long valley near Douentza in central Mali. It belongs to a cluster of languages/dialects including Kindige, spoken mostly along the main Douentza-Sevare highway, and the varieties around Borko on the (very) high plateau on the northwestern edge of the Dogon (Bandiagara) plateau. These varieties are often collectively called Bondu So, but this is an exonym. A grammar of Najamba was published electronically by Language Description Heritage Library in 2017 http://ldh.clld.org/2017/02/01/escidoc2397771/ It is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139022 One cassette was recorded (on one side only) in Kubewel village in 2004. Two cassettes were recorded in Adia village in 2005 in a single long session. These have been digitized. The inventory is: Kubewel: 2004-01 side A; Adia 2005-01 side A; 2005-01 side B; 2005-02 side A; 2005-02 side B. The 2004 tape had poor sound quality and was not transcribed. A substantial part of 2005-01 side A and 2005-02 side A was transcribed and translated in unpublished keyboarded documents in 2009 (see below). The material from 2005-01 side A was further edited and appeared as a single long text at the end of the published grammar. The unpublished documents included in this work are: transcriptions: Dogon Najamba 2005_01_A Adia text transcribed 2009; Dogon Najamba 2005_02_A Adia text transcribed 2009. translations: Dogon Najamba 2005_01_A Adia text translated 2009; Dogon Najamba 2005_02_A Adia text translated 2009
- Keyword:
- Najamba, Dogon, Douenzta, Mali, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogon Najamba Audio Files
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tebul Ure (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tebul Ure, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Tebul Ure-speaking (Dogon, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bunoge (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Bunoge, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Bunoge-speaking (Dogon, Mali) village photos
-
- Creator:
- Malik, Hafiz and Khan, Muhammad Khurran, King Saud University
- Description:
- Details of the microphone used for data collection, acoustic environment in which data was collected, and naming convention used are provided here. 1 - Microphones Used: The microphones used to collect this dataset belong to 7 different trademarks. Table (1) illustrates the number of used Mics of different trademarks and models. Table 1: Trademarks and models of Mics Mic Trademark Mic Model # of Mics Shure SM-58 3 Electro-Voice RE-20 2 Sennheiser MD-421 3 AKG C 451 2 AKG C 3000 B 2 Neumann KM184 2 Coles 4038 2 The t.bone MB88U 6 Total 22 2- Environment Description: A brief description of the 6 environments in which the dataset was collected is presented here: (i) Soundproof room: a small room (nearly 1.5m × 1.5m × 2m), which is closed and completely isolated. With an exception of a small window in the front side of the room which is made of glass, all the walls of the room are made of wood and covered by a layer of sponge from the inner side, and the floor is covered by carpet. (ii) Class room: standard class room (6m × 5m × 3m). (iii) Lab: small lab (4m × 4m × 3m). All the walls are made of glasses and the floor is covered by carpet. The lab contains 9 computers. (iv) Stairs: is in the second floor. The place of recording is 3m × 5m (v) Parking: is the college parking. (vi) Garden: is an open space outside the buildings. 3- Naming Convention: This set of rules were followed as a naming convention to give each file in the dataset a unique name: (i) The file name is 19 characters long, and consists of 5 sections separated by underscores. (ii) The first section is of 3 characters indicates the Microphone trademark. (iii) The second section of 4 characters indicates the microphone model as in table (2). (iv) The third section of 2 characters indicates a specific microphone within a set of microphones of the same trademark and model, since we have more than one microphone of the same trademark and model. (v) The fourth section of 2 characters indicates the environment, where Soundproof room --> 01 Class room --> 02 Lab --> 03 Stairs --> 04 Parking --> 05 Garden --> 06 (vi) The fifth section of 2 characters indicates the language, where Arabic --> 01 English --> 02 Chinese --> 03 Indonesian --> 04 (vii) The sixth section of 2 characters indicates the speaker. Table 2: Microphones Naming Criteria Original Mic Trademark and model --> Naming Convenient Shure SM-58 --> SHU_0058 Electro-Voice RE-20 --> ELE_0020 Sennheiser MD-421 --> SEN_0421 AKG C 451 --> AKG_0451 AKG C 3000 B --> AKG_3000 Neumann KM184 --> NEU_0184 Coles 4038 --> COL_4038 The t.bone MB88U --> TBO_0088 For example: SEN_0421_02_01_02_03 is an English file recorded by speaker number 3 in the soundproof room using microphone number 2 of Sennheiser MD-421
- Keyword:
- audio forensic, multimedia forensics, microphone identification, tamper detection, splicing detection, and codec identification
- Citation to related publication:
- http://dx.doi.org/10.1080/00450618.2017.1296186
- Discipline:
- Engineering, Science, and Government, Politics and Law
- Title:
- The KSU-UMD Dataset for Benchmarking for Audio Forensic Algorithms
-
- Creator:
- Ozturk, Dogacan
- Description:
- The global magnetosphere-ionosphere-thermosphere (M-I-T) system is intrinsically coupled and susceptible to external drivers such as solar wind dynamic pressure enhancements. In order to understand the large-scale dynamic processes in the M-I-T system due to the compression from the solar wind, the 17 March 2015 sudden commencement was studied in detail using global numerical models. This data set is comprised of the simulation data generated from these models. and NOTE: The following changes were made to this dataset on March 28, 2018. First, two mp4 files were added. Second, the symbol representing "degree" was not rendering properly in the README file. The symbols were removed and replaced with the word "degree". Third, the metadata in the "methodology" and "description" fields were revised for content and clarity. On April 16, 2018 a citation to the corresponding article was added to the metadata record.
- Keyword:
- MHD model, BATS'R'US, and GITM
- Citation to related publication:
- Ozturk, D. S., Zou, S., Ridley, A. J., & Slavin, J. A. (2018). Modeling study of the geospace system response to the solar wind dynamic pressure enhancement on 17 March 2015. Journal of Geophysical Research: Space Physics, 123, 2974–2989. https://doi.org/10.1002/2017JA025099
- Discipline:
- Science
- Title:
- Model results for "Modeling study of geospace system response to the solar wind dynamic pressure enhancement on March 17, 2015"
-
- Creator:
- Horsley, Timothy J. and Sampson, Christina P.
- Description:
- The data (raw data, composite files [processed], and some images) can be read by the program TerraSurveyor. Version 3.0.34.10 of the software was used to create the composite files in this deposit. and The magnetometer data was the second step in a geophysical survey program that began with magnetic susceptibility survey of a portion of the Weedon Island Preserve in St. Petersburg, Florida. Geophysical survey was used to map human occupation of the study area and to guide subsequent archaeological excavations.
- Keyword:
- magnetometry, geophysical survey, remote sensing, Florida archaeology, and coastal archaeology
- Citation to related publication:
- Sampson, C. P. (2019) Safety Harbor at the Weeden Island Site: Late Pre-Columbian Craft, Community, and Complexity on Florida's Gulf Coast. PhD Dissertation, University of Michigan. and Forthcoming: Sampson, Christina Perry and Timothy J. Horsley. Using Multi-Staged Magnetic Survey and Excavation to Assess Community Settlement Organization: A Case Study from the Central Peninsular Gulf Coast of Florida. Advances in Archaeological Practice.
- Discipline:
- Science and Social Sciences
- Title:
- Magnetometer Survey Data from the Weeden Island Site (8Pi1), Florida (2013-2014)
-
- Creator:
- Niemi, Nathan A. and Abbey, Alyssa L.
- Description:
- These data were produced in the scope of research into the timing, rate, and magnitude of extensional exhumation along the length of the Rio Grande Rift in Colorado and New Mexico. The low-temperature (apatite and zircon (U-Th)/He) thermochronometric ages presented in this data set are sensitive to near-surface temperatures (~80C and 180C, respectively) and record the progressive exhumation of the rock mass from which the samples were collected towards the Earth's surface. These thermochronometric ages, and the differences between them, provide insight into the absolute timing, exhumation rate and total magnitude of exhumation on the normal faults that bound the Rio Grande Rift. and The QTQt program mentioned (Version QTQt64R5.6.2a was used for the data presented in this deposit) is not openly available for download, but is described in the Gallagher 2012 publication referenced, and can be requested from its author. For more information on the request process and a user guide, see http://www.iearth.org.au/codes/QTQt/
- Keyword:
- thermochronology, helium dating, (U-Th)/He, Rio Grande Rift, New Mexico, Colorado, and extensional tectonics
- Citation to related publication:
- Abbey, A. L. and Niemi, N. A., in press, Perspectives on continental rifting processes from spatiotemporal patterns of faulting and magmatism in the Rio Grande rift, USA: Tectonics
- Discipline:
- Science
- Title:
- Dataset of apatite and zircon (U-Th)/He thermochronologic analyses from the Rio Grande Rift, Colorado and New Mexico, USA to accompany Abbey and Niemi, 2019, Tectonics.
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Discipline:
- Engineering and Science
- Title:
- Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 1 month time window - 1980 through 2015 monthly summary data and model output
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/ , and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Discipline:
- Engineering and Science
- Title:
- Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 6 month time window - 1980 through 2015 monthly summary data and model output
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research, University of Michigan
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine Learning, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Discipline:
- Engineering and Science
- Title:
- Large Lake Statistical Water Balance Model - 12 month time window - 1980 through 2015 monthly summary data and model output
-
- Creator:
- Steiner, Allison and Bryan, Alex
- Description:
- Included are RegCM simulations driven by three different types of boundary conditions 1. ERA - present day only (1979-2005) 2. GFDL - present day (1978-2005) and future (2041-2065) 3. HadGEM - present day (1978-2005) and future (2041-2065) Each directory has three files with monthly averaged values: ATM: includes 4D (t,z,y,x) atmospheric fields (pressure, winds, temperature, specific humidity, cloud water) and some 3D fields (t,y,x) precipitation, soil temperature, soil water SRF: includes 3D (t,y,x) surface variables (surface pressure, 10m winds, drag coefficient, surface temperature, 2m air temperature, soil moisture, precipitation, runoff, snow, sensible heat flux, latent heat flux, surface radiation components (SW, LW), PBL height, albedo, sunshine duration) RAD: includes 4D radiative transfer variables (SW and LW heating, TOA fluxes, cloud fraction, ice water content) clm_h0 files: CLM land surface files, includes canopy variables, surface fluxes, soil moisture by layers, etc. "
- Keyword:
- climate
- Citation to related publication:
- Bryan, A. M., A. L. Steiner, and D. J. Posselt (2015), Regional modeling of surface-atmosphere interactions and their impact on Great Lakes hydroclimate, J. Geophys. Res. Atmos., 120, 1044–1064. https://doi.org/10.1002/2014JD022316
- Discipline:
- Science
- Title:
- Regional Climate Model simulations
-
- Creator:
- Bustamante, Angela C., Opron, Kristopher, Ehlenbach, William J., Crane, Paul K., Keene, Dirk, Standiford, Theodore J., and Singer, Benjamin H.
- Description:
- This study was conducted to detect and analyze modules, or clusters of genes, associated with sepsis, using RNAseq data obtained from 12 participants who died of sepsis and 12 participants who died of non-infectious critical illness while hospitalized. This deposit contains the input data and parameters needed to reproduce the weighted gene co-expression network analysis (WGCNA) and gene enrichment analysis performed on this data. This analysis requires the R packages "WGCNA" version 1.68 and "DESeq2" version 1.22.2 available for download from bioconductor ( http://bioconductor.org). The external bioinformatics tool DAVID version 6.8 ( https://david.ncifcrf.gov/) was used as an additional gene enrichment analysis. Please see the supplemental methods document within this deposit and published research letter for more detailed information.
- Keyword:
- Sepsis, RNAseq, Transcriptomics, Human, and Brain
- Citation to related publication:
- Discipline:
- Science
- Title:
- Transcriptomic Profiles of Sepsis in the Human Brain
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:124092 (Phyllops falcatus) - WholeBody. Raw - Dataset includes 1601 TIF images (each 1085 x 1386 x 1 voxel at 0.0328326086085239 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:124092 (Phyllops falcatus) - WholeBody. Reconstructed - Dataset includes 2000 TIF images (each 1085 x 1386 x 1 voxel at 0.032833 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Phyllostomidae, Phyllops falcatus, 1987339099, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987339099
- Discipline:
- Science
- Title:
- Computed tomography voxel dataset for ummz:mammals:124092-Phyllops falcatus-WholeBody
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Raw - Dataset includes 1601 TIF images (each 1416 x 914 x 1 voxel at 0.0150099083890765 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Reconstructed - Dataset includes 654 TIF images (each 1416 x 914 x 1 voxel at 0.015010 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
- Discipline:
- Science
- Title:
- Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-Skull
-
- Creator:
- Liu, Meichen
- Description:
- We intend to figure out the difference of stress drops, which is a characteristic source parameter, between shallow and deep-focus earthquakes. Significant stress drop difference may shed light on the difference of physical mechanisms of shallow and deep-focus earthquakes, which has been a elusive question. We select from deep-focus earthquakes (> 400 km) in 2000-2018 and obtain their stress drops using P and S waves. We find that stress drops of deep-focus earthquakes are about one order of magnitude higher than that of shallow earthquakes, indicating about one order of magnitude higher shear strength of shallow faults than faults in the mantle. The wide range of stress drops further suggests coexistence of phase transformation and shear-induced melting mechanisms of deep-focus earthquakes.
- Citation to related publication:
- Discipline:
- Science
- Title:
- Stress drop variation of deep-focus earthquakes tables
-
- Creator:
- Engel, Daniel D. , Evans, Mary Anne, Low, Bobbi S., and Schaeffer, Jeff
- Description:
- This dataset was compiled as an attempt to understand how natural resource managers and research ecologists in the Great Lakes region integrate the ecosystem services (ES) paradigm into their work. The following text is the adapted abstract from a thesis associated with this data. Ecosystem services, or the benefits people obtain from ecosystems, have gained much momentum in natural resource management in recent decades as a relatively comprehensive approach to provide quantitative tools for improving decision-making and policy design. However, to date we know little about whether and how natural resource practitioners, from natural resource managers to research ecologists (hereafter managers and ecologists respectively), have adopted the ES paradigm into their respective work. Here, we addressed this knowledge gap by asking managers and ecologists about whether and how they have adopted the ES paradigm into their respective work. First, we surveyed federal, state, provincial and tribal managers in the Great Lakes region about their perception and use of ES as well as the relevance of specific services to their work. Although results indicate that fewer than 31% of the managers said they currently consider economic values of ES, 79% of managers said they would use economic information on ES if they had access to it. Additionally, managers reported that ES-related information was generally inadequate for their resource management needs. We also assessed managers by dividing them into identifiable groups (e.g. managers working in different types of government agencies or administrative levels) to evaluate differential ES integration. Overall, results suggest a desire among managers to transition from considering ES concepts in their management practices to quantifying economic metrics, indicating a need for practical and accessible valuation techniques. Due to a sample of opportunity at the USGS Great Lakes Science Center (GLSC), we also evaluated GLSC research ecologists’ integration of the ES paradigm because they play an important role by contributing requisite ecological knowledge for ES models. Managers and ecologists almost unanimously agreed that it was appropriate to consider ES in resource management and also showed convergence on the high priority ES. However, ecologists appeared to overestimate the adequacy of ES-related information they provide as managers reported the information was inadequate for their needs. This divergence may reflect an underrepresentation of ecological economists in this system who can aid in translating ecological models into estimates of human well-being. As a note, the dataset for the research ecologists has had some data removed as it could be considered personally identifiable information due to the small sample size in that population. The surveys associated with both datasets have also been included in PDF format. Curation Notes: Three files were added to the data set on Dec 21, 2017. Two csv files: "Ecosystem services and Research Ecologists - Data Index.csv" and "Ecosystem services and Research Managers - Data Index.csv" and one text file: "Ecosystem Services Adoption Readme.txt". The file names of the original four files were altered to replace an ampersand with the word "and".
- Keyword:
- Research Ecologist, Decision-Making, Ecosystem Services, Natural Resource Management, Paradigm Adoption, and Ecological Economics
- Citation to related publication:
- Engel, D.D., Evans, M.A., Low, B.S., Schaeffer, J. (2017) “Understanding Ecosystem Services Adoption by Natural Resource Managers and Research Ecologists.” Journal of Great Lakes Research, 43(3), 169-179. https://doi.org/10.1016/j.jglr.2017.01.005
- Discipline:
- Science and Social Sciences
- Title:
- Understanding Ecosystem Services Adoption by Natural Resource Managers and Research Ecologists: Survey Data
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- Apatite fission track thermochronometry data were collected from the Eastern Greater Caucasus orogen, Azerbaijan. Thermochronometry data constrain the history of exhumation and deformation of rocks within the orogen, which is an active accretionary prism. Thermochronometry data record the timing of cooling of a rock sample beneath a given closure temperature. Given an assumed or inferred geothermal gradient, thermochronometric ages can be used to infer exhumation rates and make interpretations about rates of deformation in orogens. The apatite fission track data presented here are analyzed in concert with apatite (U-Th)/He and zircon (U-Th)/He ages reported in Tye et al., in prep., to characterize the exhumation history of the Eastern Greater Caucasus.
- Keyword:
- thermochronometry, apatite fission track, Caucasus
- Citation to related publication:
- Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., and Babayev, G. R., Structural and thermochronometric data provide insight into strain accommodation within an active accretionary prism, the Eastern Greater Caucasus. In prep.
- Discipline:
- Science
- Title:
- Apatite fission track thermochronometry data from the Eastern Greater Caucasus, Azerbaijan
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- The Eastern Greater Caucasus is a mountain belt in western Asia that formed as an accretionary prism above an active subduction zone. Because of the bedrock exposure in the range, it offers a unique opportunity to research deformation processes in accretionary prisms, which are ubiquitous above the Earth's many subduction zones but are typically submarine and difficult to investigate. The data presented here result from field geologic mapping in several swaths roughly perpendicular to the mountain range that together span the entire range across strike. The data serve will serve as the basis for inference of the deep structural architecture of the range and characterization of the styles of deformation present in the range.
- Keyword:
- structural geology, Greater Caucasus, tectonics, geologic mapping, and accretionary prism
- Citation to related publication:
- Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., and Babayev, G. R., Structural and thermochronometric data provide insight into strain accommodation within an active accretionary prism, the Eastern Greater Caucasus. In prep.
- Discipline:
- Science
- Title:
- Eastern Greater Caucasus, Azerbaijan, geological swath mapping data
-
- Creator:
- Liemohn, Michael W and Wooden, Paige
- Description:
- Journals sometimes focus the attention of the research community by having a special collection, sometimes an entire special issue, devoted to a single topic. A reasonable question to ask is whether the extra effort of organizing, promoting, and maintaining the special collection is worthwhile. The paper that this data set accompanies examines paper impact in the Journal of Geophysical Research Space Physics, separating the special collection papers from the non-special-collection submissions. The conclusion is that special collections are worth the extra work.
- Keyword:
- journal special collections, bibliometrics, citations, and downloads
- Citation to related publication:
- Liemohn, M. W., & Wooden, P. (2019). Editorial: Impact of special collections in JGR Space Physics. Journal of Geophysical Research Space Physics. https://doi.org/10.1002/essoar.10501036.2
- Discipline:
- Science
- Title:
- Data from Editorial on Impact of Special Collections in JGR Space Physics
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Fulankiriya (Songhayfamily) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Songhay, Fulankiriya, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Fulankiriya-speaking (Songhay, Mali) village photos
-
- Creator:
- Heath, Jeffrey
- Description:
- Dogul Dom is a Dogon language spoken over a broad area on the Dogon (Bandiagara) plateau, mainly north(-west) of Bandiagara. A grammar was published electronically at Language Description Heritage Library in 2016. http://ldh.clld.org/2016/07/01/escidoc2326691-3 It is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/123061 Dogul Dom texts were recorded digitally at Nantanga village in 2015. Portions were transcribed and presented in the grammar as Text T01 and Text T02 Dogul Dom Nantanga 2015-01 (about 9:30 minutes), Text T01 in grammar Dogul Dom Nantanga 2015-02 (about 4:30 minutes), Text T02 in grammar
- Keyword:
- Dogul Dom, Dogon, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogon Dogul Dom Audio Files
-
- Creator:
- Heath, Jeffrey
- Description:
- Tiranige is a Dogon language spoken in villages on the high plateau near the western edge of the Dogon (Bandiagara) plateau, and in villages at the base of the cliffs and slopes leading down from the plateau to the sandy plains. As of May 2018 I am still working on a drafted Tiranige grammar which I hope to complete in 2019. The grammar draft currently ends with six short texts transcribed from dictation. The only audio recording is therefore labeled Text 07. The speakers are Amadou Toloba and Boubacar Toloba. Most but not all of it (17.5 minutes out of about 22) has been partially transcribed. The plan is to complete the grammar and to transcribe and translate at least Text 07.
- Keyword:
- Tiranige, Dogon, Mali, Audio, and Recording
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Dogon Tiranige Audio Files
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- The dataset contains U-Pb radiometric ages of zircon grains from sedimentary rocks and modern river sands from the Caucasus region of western Asia. The data were collected as part of a research project investigating the effects of continental collision in the Caucasus region on regional erosion and sedimentary systems. The data are presented using the standard quantities reported for zircon U-Pb age analyses at the University of Arizona Laserchron Center.
- Keyword:
- detrital zircon, provenance, and U-Pb
- Citation to related publication:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R, Sedimentary response to collisional orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments. In review, Basin Research.
- Discipline:
- Science
- Title:
- Sedimentary response to collisional orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments: Supplemental data tables
-
- Creator:
- Adam Schneider and Mark Flanner
- Description:
- This dataset contains all data used to generate the figures in The Cryosphere manuscript “Measuring Snow Specific Surface Area with 1.30 and 1.55 micro-meter Bidirectional Reflectance Factors,” by Adam Schneider, Mark Flanner, and Roger De Roo. These data support the theory, calibration, and application of the Near-Infrared Emitting and Reflectance Monitoring Dome (NERD), an instrument engineered to rapidly retrieve surface snow specific surface area in the field. Note that this deposit includes a microCT scan database for natural snowfall samples collected in New Hampshire during 2015-2017, comprised of raw tiff files as well as reconstructions, binarized reconstructions, and some 3D model reconstructions. and Running python scripts generally require that the following packages are installed: NumPy, SciPy, Matplotlib, Pandas, and ipdb (for debugging).
- Keyword:
- Snow specific surface area, Monte Carlo, X-ray micro-computed tomography, SNICAR, Near-Infrared Emitting and Reflectance-Monitoring Dome, Bidirectional reflectance factor, Cryosphere, and 3D
- Citation to related publication:
- https://doi.org/10.5194/tc-2018-198
- Discipline:
- Science
- Title:
- Supporting data for the Near-Infrared Emitting and Reflectance-Monitoring Dome
-
- Creator:
- Steiner, Allison and Kawecki, Stacey
- Description:
- WRF-Chem model
- Keyword:
- aerosols and weather
- Citation to related publication:
- Kawecki et al. , in review
- Discipline:
- Science
- Title:
- WRF-Chem Central US - Hygroscopicity tests
-
- Creator:
- Dillahunt, Tawanna R., Lam, Jason, Lu, Alex, and Wheeler, Earnest
- Description:
- Today’s Information and Communication Technologies (ICTs) support job searches, resume creation and the ability to highlight employment skills on social media. However, these technological tools are often tailored to high-income, highly educated users, and white-collar professionals. It is unclear what interventions address the needs of job seekers who have limited resources, education, or who may be underserved in other ways. We gathered insights from past literature and generated ten tangible design concepts to address the needs of underserved job seekers. We then conducted a needs validation and speed dating study to understand which concepts were most viable among our population. We found that the three most preferred concepts immediately addressed job seekers’ most practical needs. and Per reviewer feedback, we aim to improve the utility of this publication to other scholars by including our research materials here. This dataset includes the interview script, storyboards that were used in the needs validation study, the demographics survey/questionnaire, and the consent form.
- Keyword:
- Design, Underserved job seekers, Storyboards, Speed dating, Employment, and Needs Validation
- Citation to related publication:
- Tawanna R. Dillahunt, Jason Lam, Alex Lu, and Earnest Wheeler. 2018. Designing Future Employment Applications for Underserved Job Seekers: A Speed Dating Study. In Proceedings of the 2018 Designing Interactive Systems Conference (DIS '18). ACM, New York, NY, USA, 33-44. DOI: https://doi.org/10.1145/3196709.3196770 and http://www.tawannadillahunt.com/wp-content/uploads/2018/05/disfp453-dillahuntA.pdf
- Discipline:
- Other
- Title:
- Designing Future Employment Applications for Underserved Job Seekers: A Speed Dating Study
-
- Creator:
- Platt, Edward L.
- Description:
- We analyzed the structure of English language WikiProject coeditor networks and compare to the efficiency and performance of those projects. The list of WikiProjects give an integer key, title, and unique URL for each project. The network files are indexed by the integer keys. The quality assessment logs are indexed by project title and article title. and Curation Notes: Readme file was updated Oct. 11, 2018 to include additional context on research, file contents, and organization (see first section of readme), and explanation of additional license in the deposit referring to the 'logbook' module.
- Keyword:
- wikipedia
- Citation to related publication:
- Platt, E. L., Romero, D. M. (2018). Network Structure, Efficiency, and Performance In WikiProjects. In ICWSM. https://www.aaai.org/ocs/index.php/ICWSM/ICWSM18/paper/view/17901
- Discipline:
- Social Sciences
- Title:
- English WikiProject coeditor networks and quality assessments
-
- Creator:
- Ramasubramani, Vyas
- Description:
- The goal of the work is to elucidate the stability of a complex experimentally observed structure of proteins. We found that supercharged GFP molecules spontaneously assemble into a complex 16-mer structure that we term a protomer, and that under the right conditions an even larger assembly is observed. The protomer structure is very well defined, and we performed simulations to try and understand the mechanics underlying its behavior. In particular, we focused on understanding the role of electrostatics in this system and how varying salt concentrations would alter the stability of the structure, with the ultimate goal of predicting the effects of various mutations on the stability of the structure. There are two separate projects included in this repository, but the two are closely linked. One, the candidate_structures folder, contains the atomistic outputs used to generate coarse-grained configurations. The actual coarse-grained simulations are in the rigid_protein folder, which pulls the atomistic coordinates from the other folder. All data is managed by signac and lives in the workspace directories, which contain various folders corresponding to different parameter combinations. The parameters associated with a given folder are stored in the signac_statepoint.json files within each subdirectory. The atomistic data uses experimentally determined protein structures as a starting point; all of these are stored in the ConfigFiles folder. The primary output is the topology files generated from the PDBs by GROMACS; these topologies are then used to parametrize the Monte Carlo simulations. In some cases, atomistic simulations were actually run as well, and the outputs are stored alongside the topology files. In the rigid_protein folder, the ConfigFiles folder contains MSMS, the software used to generate polyhedral representations of proteins from the PDBs in the candidate_structures folder. All of the actual polyhedral structures are also stored in the ConfigFiles folder. The actual simulation trajectories are stored as general simulation data (GSD) files within each subdirectory of the workspace, along with a single .pos file that contains the shape definition of the (nonconvex) polyhedron used to represent a protein. The logged quantities, such as energies and MC move sizes, are stored in .log files. The logic for the simulations in the candidate_structures project is in the Python scripts project.py, operations.py, and scripts/init.py. The rigid_protein folder also includes the notebooks directory, which contains Jupyter notebooks used to perform analyses, as well as the Python scripts used to actually perform the simulations and manage the data space. In particular, the project.py, operations.py and scripts/init.py scripts contain most of the logic associated with the simulations.
- Keyword:
- Protein assembly, Cryo TEM, Hierarchical Assembly, Monte Carlo simulation, and Coarse-grained simulation
- Citation to related publication:
- Anna J Simon, Vyas Ramasubramani, Jens Glaser, Arti Pothukuchy, Jillian Gerberich, Janelle Leggere, Barrett R Morrow, Jimmy Golihar, Cheulhee Jung, Sharon C Glotzer, David W Taylor, Andrew D Ellington,"Supercharging enables organized assembly of synthetic biomolecules," bioRxiv 323261; doi: https://doi.org/10.1101/323261
- Discipline:
- Engineering and Science
- Title:
- Simulation Data associated with the paper: Supercharging enables organized assembly of synthetic biomolecules
-
- Creator:
- Cole, Shannon L
- Description:
- The nucleus accumbens (NAc) contains multiple subpopulations of medium spiny neurons (MSNs): one subpopulation expresses D1-type dopamine receptors, another expresses D2-type receptors, and a third expresses both. The relative roles in NAc of D1 neurons versus D2 neurons in appetitive motivation were assessed here. Specifically, we asked whether D1-Cre mice or D2-Cre mice would instrumentally seek optogenetic self-stimulation of those respective subpopulations in NAc, or instead avoid NAc laser stimulation. and Some statistical forms have been exported from SPSS for the purposes of accessibility to viewers. Please see the "readme" text for descriptions of each individual excel file.
- Keyword:
- Motivation Striatum Optogenetics
- Citation to related publication:
- Discipline:
- Science
- Title:
- Dataset for D1 and D2 Comparisons in Mouse Self-Stimulation
-
- Creator:
- R Paul Drake
- Description:
- The specific focus of the project was radiative shocks, which develop when shock waves become so fast and hot that the radiation from the shocked matter dominates the energy transport. This in turn leads to changes in the shock structure. Radiative shocks are challenging to simulate, as they include phenomena on a range of spatial and temporal scales and involve two types of nonlinear physics Ð- hydrodynamics and radiation transport. Even so, the range of physics involved is narrow enough that one can hope to model all of it with sufficient fidelity to reproduce the data. CRASH was focused on developing predictions for a sequence of experiments performed in Project Year 5, in which those experiments represented an extrapolation from all previously available data. The previous data involved driving radiative shocks within cylindrical structures, and mainly straight tubes. The Year 5 experiments drove a radiative shock down an elliptical tube. Our long-stated goal for these predictions was that the distribution of predicted values would overlap significantly with the observed distribution. We achieved this goal. Achieving our goal required the conversion of an established space-weather code to model radiative shocks at high energy density. To obtain reasonable fidelity with respect to the experimental data required implementing a laser absorption package, in addition to a hydrodynamic solver, electron physics and heat conduction, and multigroup diffusive radiation transport. The dedicated experiments provided evidence of experimental variability, validation of the calculation of initial shock wave behavior, and validation data at many observation times using cylindrical shock tubes. Following this were preparatory experiments for and finally the execution of the Year 5 experiments. The predictive science research included a wide range of sensitivity studies to determine which variables were important and a sequence of predictive studies focused on specific issues and sets of data. This led ultimately to predictions of shock location for the Year 5 experiments. A conclusion from this project is that the serious quantification of uncertainty in simulations is a dauntingly difficult and expensive prospect. Pre-existing codes are unlikely to have been built with attention to what will be needed to quantify their uncertainty. Pre-existing experimental results are even more unlikely to include a sufficiently detailed analysis of the experimental uncertainties. And this will also be true of most experiments that might be used to validate components of the simulation. The analysis of uncertainty in any one of the physical processes (and related physical constants) is a major effort. And addressing model form uncertainty is an even bigger challenge, that may in principle require development of complete, alternative simulation models. We made a start at all of this, and completed almost none of it. But by the end of a project, we finally had all the pieces in place and working that would have enabled a range of important studies and advances in relatively near-term years. But the sponsor terminated the program after only five years. For most of the participants this was a relatively minor development, although for a few of them it proved to be enormously disruptive. We believe that the cost to the nation, in work that was ready be done but now will not be, was much much larger. The sketch of the target was produced using a drawing program based on the experimental dimensions. The annotated photograph of the target was obtained using a visible-light camera. The colorized radiographs were obtained via backilit-pinhole radiography of a radiative shock propagating down an elliptical tube, at 26 ns after the lasers driving the shock tube fired. The graph showing lines and circles was produced by running many computer models, analyzing their statistical distribution, and measuring actual shock positions in the experiment.
- Keyword:
- Radiative shock
- Citation to related publication:
- R.P. Drake, F.W. Doss, R.G. McClarren, M.L. Adams, N. Amato, D.Bingham, C.C. Chou, C. DiStefano, K. Fidkowsky, B. Fryxell, T.I.Gombosi, M.J. Grosskopf, J.P. Holloway, B. van der Holst, C.M.Huntington, S. Karni, C.M. Krauland, C.C. Kuranz, E. Larsen, B. vanLeer, B. Mallick, D. Marion, W. Martin, J.E. Morel, E.S. Myra, V. Nair, K.G. Powell, L. Raushberger, P. Roe, E. Rutter, I.V. Sokolov, Q. Stout, B.R. Torralva, G. Toth, K. Thornton, A.J. Visco, “Radiative Effects in Radiative Shocks in Shock Tubes”, High Energy Density Physics 7, 130-140 (2011) https://doi.org/10.1016/j.hedp.2011.03.005
- Discipline:
- Science
- Title:
- Data from radiative shock experiments with an elliptical tube
-
- Creator:
- Johnson, Jena E.
- Description:
- Note: The "Readme_Metadata" file was updated on March 15, 2018 to include a citation to the related article making use of this data and was reformatted to be presented as a pdf file rather than as a docx file. and This data set is comprised of synchrotron-based X-ray transmission and absorption spectroscopy data as well as X-ray diffraction patterns that were performed to characterize the best-preserved examples of nanoscale iron silicate mineral inclusions from 2.5 billion-year-old Banded Iron Formations (BIFs) and ferruginous cherts.
- Keyword:
- Precambrian banded iron formations and nanoparticle inclusions of iron silicates in chert
- Citation to related publication:
- Johnson, J. E., Muhling, J. R., Cosmidis, J., Rasmussen, B. & Templeton, A. S. (2018). Low-Fe(III) Greenalite Was a Primary Mineral from Neoarchean Oceans. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL076311
- Discipline:
- Science
- Title:
- Low-Fe(III) Greenalite Was a Primary Mineral from Neoarchean Oceans (Raw Data)
-
- Creator:
- Burgin, Tucker and Mayes, Heather B.
- Description:
- This project aimed to discover and analyze the molecular mechanism of synthesis of two particular fucosylated oligosaccharide products in a mutant enzyme, Thermatoga maratima Alpha-L-Fucosidase D224G, whose wild type performs the opposite reaction (cleavage of fucosyl glycosidic bonds). Discovery of the mechanism was performed using an unbiased simulations method known as aimless shooting, whereas analysis of the mechanism in terms of the energy profile was performed using a separate method known as equilibrium path sampling. The data here concerns the latter method. and The contents of the atesa_master.zip are the ATESA GitHub project. A Python program for automating transition path sampling with aimless shooting using Amber. https://github.com/team-mayes/atesa
- Keyword:
- Equilibrium Path Sampling, Transition Path Sampling, Enzymatic Mechanism, and GH29
- Citation to related publication:
- 10.1039/C8RE00240A
- Discipline:
- Engineering
- Title:
- Equilibrium Path Sampling Data for Two Glycosynthetic Reactions of Thermatoga maratima Alpha-L-Fucosidase D224G
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Manding Bambara (Mande family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Villages, Mande, Manding Bambara, and Mali
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
- Title:
- Manding Bambara-speaking (Mande, Mali) village photos
-
- Creator:
- Bemmels, Jordan B. and Dick, Christopher W.
- Description:
- Raw SNP genotypes are provided in STRUCTURE format, with a maximum of one SNP reported per ddRAD locus. The files "caryco_SNP.str" and "caryov_SNP.str" are genotypes for Carya cordiformis and Carya ovata, respectively. The first column of each file is the individual name, the second column is the population (see original publication for information on population locations), and the remaining columns are genotypes of individual SNPs. Rows represent individuals, with the diploid genotypes contained on two lines per individual. Missing data are entered as "0" (zero). The first row is a header with a unique identifier for each SNP. and Occurrence records for each species are provided in the file "occs_carya.csv" and contain the latitude and longitude of each record.
- Keyword:
- eastern North America, glacial refugia, phylogeography, temperate trees, and single nucleotide polymorphisms
- Citation to related publication:
- Bemmels, J.B., and C.W. Dick. 2018. Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two North American hickory species. Journal of Biogeography, in press. DOI: 10.1111/jbi.13358
- Discipline:
- Science
- Title:
- Data from "Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two eastern North American hickory species"
-
- Creator:
- Azari, A. R.
- Description:
- ABSTRACT: We present a statistical study of interchange injections in Saturn's inner and middle magnetosphere focusing on the dependence of occurrence rate and properties on radial distance, partial pressure, and local time distribution. Events are evaluated from over the entirety of the Cassini mission’s equatorial orbits between 2005 and 2016. We identified interchange events from CHarge Energy Mass Spectrometer (CHEMS) H+ data using a trained and tested automated algorithm, which has been compared with manual event identification for optimization. We provide estimates of interchange based on intensity, which we use to investigate current inconsistencies in local time occurrence rates. This represents the first automated detection method of interchange, estimation of injection event intensity, and comparison between interchange injection survey results. We find the peak rates of interchange occur between 7 - 9 Saturn radii and that this range coincides with the most intense events as defined by H+ partial particle pressure. We determine that nightside occurrence dominates as compared to the dayside injection rate, supporting the hypothesis of an inversely dependent instability growth rate on local Pedersen ionospheric conductivity. Additionally, we observe a slight preference for intense events on the dawn side, supporting a triggering mechanism related to large-scale injections from downtail reconnection. Our observed local time dependence paints a dynamic picture of interchange triggering due to both the large-scale injection driven process and ionospheric conductivity. Within this repository we provide a readme file (description of data file and usage) and the event list provided as a .txt file. The event list includes start and stop times, comparison to previous surveys, and the average location of events identified. Additional formats are available on request. , Further details on this method can be found in "Interchange Injections at Saturn: Statistical Survey of Energetic H+ Sudden Flux Intensifications" by Azari et al., 2018 in the Journal of Geophysical Research: Space Physics. https://doi.org/10.1029/2018JA025391. , and Curation notes: The files 'events_CORRECTED.txt' and 'readme_UPDATED.rtf' were added to this record July 31 and August 7, 2018 and supersede the previous data file 'events.txt' and readme file 'readme.rtf'. The file 'events.txt' uploaded May 9, 2018 should not be used, as this file contains a duplication error where the last column, InAllSurveys, is incorrectly presented as a duplicate of the column InAnySurvey. 'readme_UPDATED.rtf' contains additional context and updated references to the new data file.
- Keyword:
- Planetary Science, Automated Event Detection, Space Physics, Magnetospheric Physics, Interchange Injections, and Saturn
- Citation to related publication:
- Azari, A. R., Liemohn, M. W., Jia, X., Thomsen, M. F., Mitchell, D. G., Sergis, N., Rymer, A. M., Hospodarsky, G. B., Paranicas, C. , and Vandegriff, J. (2018). Interchange Injections at Saturn: Statistical Survey of Energetic H+ Sudden Flux Intensifications. Journal of Geophysical Research: Space Physics, 123. https://doi.org/10.1029/2018JA025391
- Discipline:
- Science
- Title:
- Event List for "Interchange Injections at Saturn: Statistical Survey of Energetic H+ Sudden Flux Intensifications"
-
- Creator:
- Lee, Kyu Han, Foxman, Betsy, and Gordon, Aubree
- Description:
- Data include variables used to run mixed effects models examining the association between the nose/throat microbiome and influenza virus infection. Certain individual participant data have been excluded due to identifiability concerns. Data also include the oligotype count table and taxonomic classifications. and Curation Notes: Readme updated Nov. 29, 2018 with context for oligotype and taxonomy files, and citation to associated article.
- Keyword:
- Influenza and Microbiome
- Citation to related publication:
- Lee KH, Gordon A, Shedden K, Kuan G, Ng S, Balmaseda A, Foxman B. The respiratory microbiome and susceptibility to influenza virus infection. PloS One. 2019;14:e0207898. doi:10.1371/journal.pone.0207898
- Discipline:
- Health Sciences
- Title:
- Transmission of Oral microbiome and Sequencing - Influenza Susceptibility
-
- Creator:
- Yoshida, Sei and Swanson, Joel A
- Description:
- The rapid activation of the mechanistic target of rapamycin complex-1 (mTORC1) by growth factors is increased by extracellular amino acids through yet-undefined mechanisms of amino acid transfer into endolysosomes. Because the endocytic process of macropinocytosis concentrates extracellular solutes into endolysosomes and is increased in cells stimulated by growth factors or tumor-promoting phorbol esters, we analyzed its role in amino acid–dependent activation of mTORC1. Here, we show that growth factor-dependent activation of mTORC1 by amino acids, but not glucose, requires macropinocytosis. In murine bone marrow–derived macrophages and murine embryonic fibroblasts stimulated with their cognate growth factors or with phorbol myristate acetate, activation of mTORC1 required an Akt-independent vesicular pathway of amino acid delivery into endolysosomes, mediated by the actin cytoskeleton. Macropinocytosis delivered small, fluorescent fluid-phase solutes into endolysosomes sufficiently fast to explain growth factor–mediated signaling by amino acids. Therefore, the amino acid–laden macropinosome is an essential and discrete unit of growth factor receptor signaling to mTORC1
- Keyword:
- growth factor signaling, Macropinosomes, and mTORC1
- Citation to related publication:
- http://jcb.rupress.org/content/211/1/159
- Discipline:
- Health Sciences
- Title:
- Growth factor signaling to mTORC1 by amino acid–laden macropinosomes
-
- Creator:
- MacEachern, Mark P and Criss, Cory N
- Description:
- While collaboration with industry is paramount to innovation, the recent emphasis on industrial relationship transparency has sparked new guidelines, research studies, and standardizations focused on re-defining conflict of interest. There is limited data on defining the specific financial amount wherein a conflict of interest is relevant. This study is the first to assess the potential financial effects on high-quality clinical data, or the “indirect sponsorship”.
- Keyword:
- Sponsorship, Indirect sponsorship, Surgery, Robotic surgery, and DaVinci
- Citation to related publication:
- Criss CN, MacEachern MP, Matusko N, Dimick JB, Maggard-Gibbons M, Gadepalli SK. The Impact of Corporate Payments on Robotic Surgery Research: A Systematic Review. Ann Surg. 2019 Mar; 269 (3): 389-396. doi: 10.1097/SLA.0000000000003000. PMID: 30067545.
- Discipline:
- Health Sciences
- Title:
- The impact of corporate payments on robotic surgery research - dataset
-
- Creator:
- Linyan, Xiang and Oleg, Zikanov
- Description:
- The Liquid Metal Battery (LMB), a promising energy-storage device that contains liquid-metal interior, is studied numerically in the paper. The metal pad roll instability was modeled based on the open-source CFD software, OpenFOAM. It's based on the solver for simulations of incompressible multiphase flows multiphaseInterFoam modified to include the electromagnetic fields and account for the sharp variations of the electrical conductivity.
- Keyword:
- Liquid metal battery, Interfacial waves, Instability, and OpenFOAM
- Citation to related publication:
- Oleg Zikanov "Shallow water modeling of rolling pad instability in liquid metal batteries" THEORETICAL AND COMPUTATIONAL FLUID DYNAMICS, v.32, 2017, p.325-347 and Linyan Xiang and Oleg Zikanov "Numerical simulation of rolling pad instability in liquid metal batteries" submitted to PHYSICS OF FLUIDS
- Discipline:
- Science
- Title:
- Metal pad instability in liquid metal batteries. animations of computed flow regimes
-
- Creator:
- Eby, David W and Molnar, Lisa J
- Description:
- Data are contained in an Excel spreadsheet formatted such that each row is a separate participant and each column is a separate question. This file is called: EbyEtAl-TransportCaregiver. A data dictionary that gives the text for each question and the response categories mappings is contained in another Excel Spreadsheet. This file is called: EbyEtAl-TransportCaregiverDictionary. The text of the survey, the development of weights, and response rate calculations can be found in the Deep Blue report discussed previously.
- Keyword:
- Caregiver Burden, Driving, and Automobile
- Citation to related publication:
- Eby, D.W., Molnar, L.J., Kostyniuk, L.P., St. Louis, R.M., & Zanier, N. (2011). Recommendations for Meeting the Needs of Michigan’s Aging Population. Report No. RC-1562. Lansing, MI: Michigan Department of Transportation. This report can be found on Deep Blue: https://deepblue.lib.umich.edu/handle/2027.42/90961
- Discipline:
- Social Sciences
- Title:
- Characteristics of Informal Caregivers who Provide Transportation Assistance to Older Adults
-
- Creator:
- MacEachern, Mark P
- Description:
- The dataset represents the complete search strategies for all literature databases searched during the systematic review. The Endnote library that contains all citations is also included.
- Keyword:
- Systematic review, Anti-osteoporotic drugs, Fractures, Surgery, and Meta-analysis
- Citation to related publication:
- Saito, T., Sterbenz, J.M., Malay, S. et al. Osteoporos Int (2017) 28: 3289. https://doi.org/10.1007/s00198-017-4175-0 and https://www.ncbi.nlm.nih.gov/pubmed/28770272
- Discipline:
- Health Sciences
- Title:
- Literature Search Strategies for "Effectiveness of anti-osteoporotic drugs to prevent secondary fragility fractures: systematic review and meta-analysis"
-
- Creator:
- Mirshams Shahshahani, Payam
- Description:
- Investigating minimum human reaction times is often confounded by the motivation, training, and state of arousal of the subjects. We used the reaction times of athletes competing in the shorter sprint events in the Athletics competitions in recent Olympics (2004-2016) to determine minimum human reaction times because there's little question as to their motivation, training, or state of arousal. The reaction times of sprinters however are only available on the IAAF web page for each individual heat, in each event, at each Olympic. Therefore we compiled all these data into two separate excel sheets which can be used for further analyses.
- Keyword:
- minimum reaction time, sprinter, Olympics, Athletics, sex difference, starting block, and false start
- Citation to related publication:
- Mirshams Shahshahani P, Lipps DB, Galecki AT, Ashton-Miller JA (2018) On the apparent decrease in Olympic sprinter reaction times. PLoS ONE 13(6): e0198633. https://doi.org/10.1371/journal.pone.0198633
- Discipline:
- Engineering, General Information Sources, Science, Health Sciences, and Other
- Title:
- Downloaded IAAF Sprint Results in all Heats for 2004 - 2016 Olympics for both Men and Women
-
- Creator:
- Moniri, Saman, Xiao, Xianghui, and Shahani, Ashwin J.
- Description:
- The data file is comprised of 22,500 X-ray projections (15 scans of 1500 projections each) recorded during solidification of Al-Ge-Na. The raw data file is in .hdf format and can be reconstructed into .tiff, e.g., by using the TomoPy toolbox in Python.
- Keyword:
- X-ray microtomography, synchrotron, in situ, 4D materials science, irregular eutectic, growth, and solidification
- Citation to related publication:
- Saman Moniri, Xianghui Xiao, and Ashwin J. Shahani, "Caught in the act: The mechanism of eutectic modification by trace impurities"
- Title:
- X-ray tomography dataset for 'Caught in the act: The mechanism of eutectic modification by trace impurities'
-
- Creator:
- Muzyk, Andrew, Smothers, Zachary, Akrobetu, Dennis, Ruiz Veve, Jennifer, MacEachern, Mark P, Tetrault, Jeanette M, and Gruppen, Larry
- Description:
- The dataset includes all citations considered for inclusion in the scoping review. The citations are accessible in Endnote (enlx) and Microsoft Excel (xlsx), as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Medical Education, Substance Use Disorders, and Scoping Review
- Citation to related publication:
- Muzyk A, Smothers ZPW, Akrobetu D, Ruiz Veve J, MacEachern M, Tetrault JM, Grupen L. (2019). Substance use disorder education in medical schools: A scoping review of the literature. Academic Medicine. PMID: 31348067. and doi: 10.1097/ACM.0000000000002883
- Discipline:
- Health Sciences
- Title:
- Substance use disorder education in medical schools: A scoping review of the literature [Literature Search Files]
-
- Creator:
- MacEachern, Mark P, Marti, Kyriaki C, Mylonas, Anastassios I, and Gruppen, Larry
- Description:
- The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote (enlx) file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the methods of the article for more information.
- Keyword:
- Dental Education, Dentistry, Education, Humanities, and Scoping Review
- Citation to related publication:
- Marti KC, Mylonas AI, MacEachern M, Gruppen L. (2019). Humanities in predoctoral dental education: A scoping review. Journal of Dental Education, 83(10), 1174-1198. DOI: 10.21815/JDE.019.126 and http://www.jdentaled.org/content/83/10/1174.long
- Discipline:
- Health Sciences
- Title:
- Humanities in predoctoral dental education: A scoping review [Literature Search Files]
-
- Creator:
- Lee, Joyce Y, Knauer, Heather A, Lee, Shawna J, MacEachern, Mark P, and Garfield, Craig F
- Description:
- The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Systematic Review, Fathers, Education, and Perinatal
- Citation to related publication:
- Lee JY, Knauer HA, Lee SJ, MacEachern MP, Garfield CF. (2018). Father-inclusive perinatal parent education programs: A systematic review. Pediatrics, 142(1). PMID: 29903835. and DOI: 10.1542/peds.2018-0437
- Discipline:
- Health Sciences
- Title:
- Father-inclusive perinatal parent education programs: A systematic review [Literature Search Files]
-
- Creator:
- Tan, Meng H, Iyengar, Ravi, Mizokami-Stout, Kara, Yentz, Sarah, MacEachern, Mark P, Shen, Li Yan, Redman, Bruce, and Gianchandani, Roma
- Description:
- The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes.
- Keyword:
- Literature search, Scoping review, and Endocrinopathies
- Citation to related publication:
- Tan MH, Iyengar R, Mizokami-Stout K, et al. Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients: a scoping review of case reports. Clin Diabetes Endocrinol. 2019;5:1. Published 2019 Jan 22. doi:10.1186/s40842-018-0073-4
- Discipline:
- Health Sciences
- Title:
- Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients [Literature Search Files]
-
- Creator:
- DeLong, Michael R, Tandon, Vickram J, Farajzadeh, Matthew, Berlin, Nicholas L, MacEachern, Mark P, Rudkin, George H, Da Lio, Andrew L, and Cederna, Paul S
- Description:
- The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Systematic Review, Acellular Dermal Matrix, Breast Reconstructions, and Tissue Expanders
- Citation to related publication:
- DeLong MR, Tandon VJ, Farajzadeh M, Berlin NL, MacEachern MP, Rudkin GH, Da Lio AL, Cederna PS. (2019). Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions. Plastic and Reconstructive Surgery. and DOI: 10.1097/PRS.0000000000006212
- Discipline:
- Health Sciences
- Title:
- Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions [Literature Search Files]
-
- Creator:
- Reed, Matthew P., Boyle, K.
- Description:
- This is the first physical anthropomorphic test device to be based both on statistical body shape models as well as 3D printing.
- Keyword:
- Child Belt Fit Manikin
- Citation to related publication:
- Reed, M.P., Ebert, S.M., and Boyle, K.J. (2017). Development and Validation of a Toddler Manikin for Assessing Belt Fit in Aviation Seats. Technical Report UMTRI-2017-7. University of Michigan Transportation Research Institute, Ann Arbor, MI. https://deepblue.lib.umich.edu/handle/2027.42/140985, Reed, M.P. and Boyle, K.J. (2017). Development of a manikin representing a two‐year‐old child for belt‐fit measurement. Proc. 2017 IRCOBI Conference. Antwerp, Belgium. https://trid.trb.org/view/1486130, and Kim, K.H., Jones, M.L.H., Ebert, S.M., Malik, L., Manary, M.A., Reed, M.P., and Klinich, K.D. (2015). Development of Virtual Toddler Fit Models for Child Safety Restraint Design. Technical Report UMTRI-2015-38. University of Michigan Transportation Research Institute, Ann Arbor, MI.
- Discipline:
- Engineering
- Title:
- Belt fit Manikin Representing a Two-Year-Old Child
-
- Creator:
- Johnson, JE and Molnar, PH
- Description:
- This IF compilation was assembled from the existing literature to understand if preservation biases affected the record of iron formations.
- Keyword:
- Archean ocean chemistry, temporal record of iron formations, and early Earth iron cycle
- Citation to related publication:
- Johnson, J. E., & Molnar, P. H. ( 2019). Widespread and persistent deposition of iron formations for two billion years. Geophysical Research Letters, 46, 3327– 3339. https://doi.org/10.1029/2019GL081970
- Discipline:
- Science
- Title:
- Widespread and persistent deposition of iron formations for two billion years: Compilation Dataset
-
- Creator:
- Gharzai, Laila A, Green, Michael D, Griffith, Kent A, and Jolly, Shruti
- Description:
- Three sensitivity analyses were performed. First, a second matching step was performed in which two controls were selected for each case, where possible using a nearest neighbor and caliper metric. Controls needed to have propensity scores within 0.1 of the case to be selected. Thirty-eight of the 39 cases had at least one control using this method and for 36 cases two controls could be selected. The average difference between case and control propensity adjuvant RT was 0.008 (range 0.00003-0.095). A second sensitivity analysis was performed to guard against immortal time bias. In order to mitigate the possibility of this effect, cases known not to have undergone adjuvant RT have been screened for suitable follow-up without a recurrence (local or regional recurrence, metastatic failure, and/or death) to ensure that if adjuvant RT had been prescribed as part of the multi-modality treatment regimen, that it would have been initiated. Three months was selected as the mandatory follow-up time. One to one matching was carried out and all 39 cases were matched to a control. A third sensitivity analysis was performed to account for stage migration seen in control patients that presented to the University of Michigan with more advanced disease. Patients that underwent adjuvant radiation were matched one to one with control group patients who did not receive adjuvant radiation, and who had the same stage at diagnosis as compared to stage at University of Michigan presentation.
- Keyword:
- adenocortical carcinoma and English
- Citation to related publication:
- Discipline:
- Health Sciences
- Title:
- Data from: Adjuvant Radiation Improves Recurrence-Free Survival and Overall Survival in Adrenocortical Carcinoma
-
- Creator:
- Thomaz, Andréa T. (UMICH), Carvalho, Tiago P. (UFRGS), Malabarba, Luiz R. (UFRGS), and Knowles, L. Lacey (UMICH)
- Description:
- Estimated phylogenetic relationships based on more than 18,000 loci in 93 individuals (full data) or 21 individuals (subset data) representing 19 described species and two putative undescribed species. Nine files are part of this dataset, including all input files to infer the phylogenetic reconstructions and the outputs obtained, in addition to a pruned tree used to infer the ancestral state reconstructions.
- Keyword:
- dusky millions poeciliids, sexual selection, South America, and ddRADseq
- Citation to related publication:
- Andréa T. Thomaz, Tiago P. Carvalho, Luiz R. Malabarba, L. Lacey Knowles, Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools, Molecular Phylogenetics and Evolution, 2018, ISSN 1055-7903, https://doi.org/10.1016/j.ympev.2018.12.008
- Discipline:
- Science
- Title:
- Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools [DATA SET]
-
- Creator:
- Mitchell, Michael
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890, and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website , and file directory
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
- Discipline:
- Humanities
- Title:
- Student Writing Eportfolio: "Jonah's" Gateway