Index Catalog // Deep Blue Data

Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 1 month time window - 1980 through 2015 monthly summary data and model output

Creator:: Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
Description:: Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
Keyword:: Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
Citation to related publication:
Discipline:: Engineering and Science
Title:: Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 1 month time window - 1980 through 2015 monthly summary data and model output

Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 6 month time window - 1980 through 2015 monthly summary data and model output

Creator:: Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
Description:: Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/ , and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
Keyword:: Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
Citation to related publication:
Discipline:: Engineering and Science
Title:: Large Lake Statistical Water Balance Model - Laurentian Great Lakes - 6 month time window - 1980 through 2015 monthly summary data and model output

Transcriptomic Profiles of Sepsis in the Human Brain

Creator:: Bustamante, Angela C., Opron, Kristopher, Ehlenbach, William J., Crane, Paul K., Keene, Dirk, Standiford, Theodore J., and Singer, Benjamin H.
Description:: This study was conducted to detect and analyze modules, or clusters of genes, associated with sepsis, using RNAseq data obtained from 12 participants who died of sepsis and 12 participants who died of non-infectious critical illness while hospitalized. This deposit contains the input data and parameters needed to reproduce the weighted gene co-expression network analysis (WGCNA) and gene enrichment analysis performed on this data. This analysis requires the R packages "WGCNA" version 1.68 and "DESeq2" version 1.22.2 available for download from bioconductor ( http://bioconductor.org). The external bioinformatics tool DAVID version 6.8 ( https://david.ncifcrf.gov/) was used as an additional gene enrichment analysis. Please see the supplemental methods document within this deposit and published research letter for more detailed information.
Keyword:: Sepsis, RNAseq, Transcriptomics, Human, and Brain
Citation to related publication:
Discipline:: Science
Title:: Transcriptomic Profiles of Sepsis in the Human Brain

Computed tomography voxel dataset for ummz:mammals:124092-Phyllops falcatus-WholeBody

Creator:: University of Michigan Museum of Zoology
Description:: Scan of specimen ummz:mammals:124092 (Phyllops falcatus) - WholeBody. Raw - Dataset includes 1601 TIF images (each 1085 x 1386 x 1 voxel at 0.0328326086085239 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:124092 (Phyllops falcatus) - WholeBody. Reconstructed - Dataset includes 2000 TIF images (each 1085 x 1386 x 1 voxel at 0.032833 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
Keyword:: Animalia, Chordata, Mammalia, Chiroptera, Phyllostomidae, Phyllops falcatus, 1987339099, computed tomography, X-ray, and 3D
Citation to related publication:: For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987339099
Discipline:: Science
Title:: Computed tomography voxel dataset for ummz:mammals:124092-Phyllops falcatus-WholeBody

Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-Skull

Creator:: University of Michigan Museum of Zoology
Description:: Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Raw - Dataset includes 1601 TIF images (each 1416 x 914 x 1 voxel at 0.0150099083890765 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Reconstructed - Dataset includes 654 TIF images (each 1416 x 914 x 1 voxel at 0.015010 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
Keyword:: Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
Citation to related publication:: For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
Discipline:: Science
Title:: Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-Skull

Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-WholeBody

Creator:: University of Michigan Museum of Zoology
Description:: Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Raw - Dataset includes 1601 TIF images (each 2000 x 2000 x 1 voxel at 0.0327439804971583 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Reconstructed - Dataset includes 1240 TIF images (each 2000 x 2000 x 1 voxel at 0.032744 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
Keyword:: Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
Citation to related publication:: For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
Discipline:: Science
Title:: Computed tomography voxel dataset for ummz:herps:246849-THAMNODYNASTES PALLIDUS-WholeBody

Large Lake Statistical Water Balance Model - 12 month time window - 1980 through 2015 monthly summary data and model output

Creator:: Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research, University of Michigan
Description:: Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
Keyword:: Water, Balance, Great Lakes, Laurentian, Machine Learning, Machine, Learning, Lakes, Bayesian, and Network
Citation to related publication:
Discipline:: Engineering and Science
Title:: Large Lake Statistical Water Balance Model - 12 month time window - 1980 through 2015 monthly summary data and model output

Apatite fission track thermochronometry data from the Eastern Greater Caucasus, Azerbaijan

Creator:: Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
Description:: Apatite fission track thermochronometry data were collected from the Eastern Greater Caucasus orogen, Azerbaijan. Thermochronometry data constrain the history of exhumation and deformation of rocks within the orogen, which is an active accretionary prism. Thermochronometry data record the timing of cooling of a rock sample beneath a given closure temperature. Given an assumed or inferred geothermal gradient, thermochronometric ages can be used to infer exhumation rates and make interpretations about rates of deformation in orogens. The apatite fission track data presented here are analyzed in concert with apatite (U-Th)/He and zircon (U-Th)/He ages reported in Tye et al., in prep., to characterize the exhumation history of the Eastern Greater Caucasus.
Keyword:: thermochronometry, apatite fission track, Caucasus
Citation to related publication:: Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., and Babayev, G. R., Structural and thermochronometric data provide insight into strain accommodation within an active accretionary prism, the Eastern Greater Caucasus. In prep.
Discipline:: Science
Title:: Apatite fission track thermochronometry data from the Eastern Greater Caucasus, Azerbaijan

Supporting Data from "Co-evolving wing spots and mating displays are genetically separable traits in Drosophila" by Massey et al.

Creator:: Wittkopp, Patricia J and Massey, Jonathan H
Description:: Data provided in this record were collected in the course of studying the genetic basis of differences in wing pigmentation and wing display between Drosophila elegans and Drosophila gunungcola.
Citation to related publication:
Discipline:: Science
Title:: Supporting Data from "Co-evolving wing spots and mating displays are genetically separable traits in Drosophila" by Massey et al.

Stress drop variation of deep-focus earthquakes tables

Creator:: Liu, Meichen
Description:: We intend to figure out the difference of stress drops, which is a characteristic source parameter, between shallow and deep-focus earthquakes. Significant stress drop difference may shed light on the difference of physical mechanisms of shallow and deep-focus earthquakes, which has been a elusive question. We select from deep-focus earthquakes (> 400 km) in 2000-2018 and obtain their stress drops using P and S waves. We find that stress drops of deep-focus earthquakes are about one order of magnitude higher than that of shallow earthquakes, indicating about one order of magnitude higher shear strength of shallow faults than faults in the mantle. The wide range of stress drops further suggests coexistence of phase transformation and shear-induced melting mechanisms of deep-focus earthquakes.
Citation to related publication:
Discipline:: Science
Title:: Stress drop variation of deep-focus earthquakes tables

Eastern Greater Caucasus, Azerbaijan, geological swath mapping data

Creator:: Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
Description:: The Eastern Greater Caucasus is a mountain belt in western Asia that formed as an accretionary prism above an active subduction zone. Because of the bedrock exposure in the range, it offers a unique opportunity to research deformation processes in accretionary prisms, which are ubiquitous above the Earth's many subduction zones but are typically submarine and difficult to investigate. The data presented here result from field geologic mapping in several swaths roughly perpendicular to the mountain range that together span the entire range across strike. The data serve will serve as the basis for inference of the deep structural architecture of the range and characterization of the styles of deformation present in the range.
Keyword:: structural geology, Greater Caucasus, tectonics, geologic mapping, and accretionary prism
Citation to related publication:: Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., and Babayev, G. R., Structural and thermochronometric data provide insight into strain accommodation within an active accretionary prism, the Eastern Greater Caucasus. In prep.
Discipline:: Science
Title:: Eastern Greater Caucasus, Azerbaijan, geological swath mapping data

Sedimentary response to collisional orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments: Supplemental data tables

Creator:: Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
Description:: The dataset contains U-Pb radiometric ages of zircon grains from sedimentary rocks and modern river sands from the Caucasus region of western Asia. The data were collected as part of a research project investigating the effects of continental collision in the Caucasus region on regional erosion and sedimentary systems. The data are presented using the standard quantities reported for zircon U-Pb age analyses at the University of Arizona Laserchron Center.
Keyword:: detrital zircon, provenance, and U-Pb
Citation to related publication:: Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R, Sedimentary response to collisional orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments. In review, Basin Research.
Discipline:: Science
Title:: Sedimentary response to collisional orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments: Supplemental data tables

Y-90 patients PET/CT & SPECT/CT and corresponding contours dataset

Creator:: Lim, Hongki and Dewaraja, Yuni K.
Description:: Interest in quantitative imaging of Y-90 is growing because transarterial radioembolization (RE) with Y-90 loaded microspheres is a promising and minimally invasive treatment that is FDA approved for unresectable primary and metastatic liver tumors. These cancers are a leading cause of cancer mortality and morbidity. Radioembolization is a therapy that irradiates liver tumors with radioactive microspheres administered through a microcatheter placed in the hepatic arterial vasculature. Radioembolization is based on the principle that healthy liver and tumor are mainly vascularized by the portal vein and the hepatic artery respectively. As a result, radioactive microspheres are preferentially located in the lesions after they are administered via the hepatic artery.
Keyword:: Y-90, PET, SPECT, CT, Segmentation, Organ, Tumor, Label
Citation to related publication:
Discipline:: Health Sciences
Title:: Y-90 patients PET/CT & SPECT/CT and corresponding contours dataset

Supplemental Data for "Lactational Metformin Exposure Programs Offspring White Adipose Tissue, Intestinal Microbiome, and Glucose Homeostasis"

Creator:: Carlson, Zachary
Description:: Data repository for supplemental data for manuscript. Article and data set are currently under review by publisher. Email for more information.
Citation to related publication:
Discipline:: Science
Title:: Supplemental Data for "Lactational Metformin Exposure Programs Offspring White Adipose Tissue, Intestinal Microbiome, and Glucose Homeostasis"

Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions [Literature Search Files]

Creator:: DeLong, Michael R, Tandon, Vickram J, Farajzadeh, Matthew, Berlin, Nicholas L, MacEachern, Mark P, Rudkin, George H, Da Lio, Andrew L, and Cederna, Paul S
Description:: The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
Keyword:: Systematic Review, Acellular Dermal Matrix, Breast Reconstructions, and Tissue Expanders
Citation to related publication:: DeLong MR, Tandon VJ, Farajzadeh M, Berlin NL, MacEachern MP, Rudkin GH, Da Lio AL, Cederna PS. (2019). Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions. Plastic and Reconstructive Surgery. DOI: 10.1097/PRS.0000000000006212
Discipline:: Health Sciences
Title:: Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions [Literature Search Files]

Father-inclusive perinatal parent education programs: A systematic review [Literature Search Files]

Creator:: Lee, Joyce Y, Knauer, Heather A, Lee, Shawna J, MacEachern, Mark P, and Garfield, Craig F
Description:: The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
Keyword:: Systematic Review, Fathers, Education, and Perinatal
Citation to related publication:: Lee JY, Knauer HA, Lee SJ, MacEachern MP, Garfield CF. (2018). Father-inclusive perinatal parent education programs: A systematic review. Pediatrics, 142(1). PMID: 29903835. DOI: 10.1542/peds.2018-0437
Discipline:: Health Sciences
Title:: Father-inclusive perinatal parent education programs: A systematic review [Literature Search Files]

Substance use disorder education in medical schools: A scoping review of the literature [Literature Search Files]

Creator:: Muzyk, Andrew, Smothers, Zachary, Akrobetu, Dennis, Ruiz Veve, Jennifer, MacEachern, Mark P, Tetrault, Jeanette M, and Gruppen, Larry
Description:: The dataset includes all citations considered for inclusion in the scoping review. The citations are accessible in Endnote (enlx) and Microsoft Excel (xlsx), as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
Keyword:: Medical Education, Substance Use Disorders, and Scoping Review
Citation to related publication:: Muzyk A, Smothers ZPW, Akrobetu D, Ruiz Veve J, MacEachern M, Tetrault JM, Grupen L. (2019). Substance use disorder education in medical schools: A scoping review of the literature. Academic Medicine. PMID: 31348067. doi: 10.1097/ACM.0000000000002883
Discipline:: Health Sciences
Title:: Substance use disorder education in medical schools: A scoping review of the literature [Literature Search Files]

Humanities in predoctoral dental education: A scoping review [Literature Search Files]

Creator:: MacEachern, Mark P, Marti, Kyriaki C, Mylonas, Anastassios I, and Gruppen, Larry
Description:: The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote (enlx) file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the methods of the article for more information.
Keyword:: Dental Education, Dentistry, Education, Humanities, and Scoping Review
Citation to related publication:: Marti KC, Mylonas AI, MacEachern M, Gruppen L. (2019). Humanities in predoctoral dental education: A scoping review. Journal of Dental Education, 83(10), 1174-1198. DOI: 10.21815/JDE.019.126 http://www.jdentaled.org/content/83/10/1174.long
Discipline:: Health Sciences
Title:: Humanities in predoctoral dental education: A scoping review [Literature Search Files]

Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients [Literature Search Files]

Creator:: Tan, Meng H, Iyengar, Ravi, Mizokami-Stout, Kara, Yentz, Sarah, MacEachern, Mark P, Shen, Li Yan, Redman, Bruce, and Gianchandani, Roma
Description:: The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes.
Keyword:: Literature search, Scoping review, and Endocrinopathies
Citation to related publication:: Tan MH, Iyengar R, Mizokami-Stout K, et al. Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients: a scoping review of case reports. Clin Diabetes Endocrinol. 2019;5:1. Published 2019 Jan 22. doi:10.1186/s40842-018-0073-4
Discipline:: Health Sciences
Title:: Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients [Literature Search Files]

Quantifying News Media Bias through Crowdsourcing and Machine Learning Dataset

Creator:: Budak, Ceren, Goel, Sharad, and Rao, Justin M
Description:: Our primary analysis is based on articles published in 2013 by the top thirteen US news outlets and two popular political blogs. To compile the set of articles published by these outlets, we first examined the complete web-browsing records for US-located users who installed the Bing Toolbar, an optional add-on application for the Internet Explorer web browser. For each of the fifteen news sites, we recorded all unique URLs that were visited by at least ten toolbar users, and we then crawled the news sites to obtain the full article title and text. This process resulted in a corpus of 803,146 articles published on the fifteen news sites over the course of a year, with each article annotated with its relative popularity. , Next, we built two binary classifiers using large-scale logistic regression. The first classifier—which we refer to as the news classifier —identifies “news” articles (i.e., articles that would typically appear in the front section of a traditional newspaper). The second classifier—the politics classifier —identifies political news from the subset of articles identified as news by the first classifier. 340,191 (42 percent) were classified as news. On the set of 340,191 news articles, 114,814 (34 percent) were classified as political. , Having identified approximately 115,000 political news articles, we next seek to categorize the articles by topic (e.g., gay rights, healthcare, etc.), and to quantify the political slant of the article. To do so, we turn to human judges recruited via Mechanical Turk to analyze the articles. For every day in 2013, we randomly selected two political articles, when available, from each of the 15 outlets we study, with sampling weights equal to the number of times the article was visited by our panel of toolbar users., Amazon Mechanical Turk Labeling task: To detect and control for possible preconceptions of an outlet’s ideological slant, workers, upon first entering the experiment, were randomly assigned to either a blinded or unblinded condition. In the blinded condition, workers were presented with only the article’s title and text, whereas in the unblinded condition, they were additionally shown the name of the outlet in which the article was published. Each article was then analyzed by two workers, one each from the sets of workers in the two conditions. For each article, each worker completed the following three tasks. First, they provided primary and secondary article classifications from a list of fifteen topics: (1) civil rights; (2) Democrat scandals; (3) drugs; (4) economy; (5) education; (6) elections; (7) environment; (8) gay rights; (9) gun-related crimes; (10) gun rights/regulation; (11) healthcare; (12) international news; (13) national security; (14) Republican scandals; and (15) other. , and Second, workers determined whether the article was descriptive news or opinion. Third, to measure ideological slant, workers were asked, “Is the article generally positive, neutral, or negative toward members of the Democratic Party?” and separately, “Is the article generally positive, neutral, or negative toward members of the Republican Party?” Choices for these last two questions were provided on a five-point scale: very positive, somewhat positive, neutral, somewhat negative, and very negative. To mitigate question-ordering effects, workers were initially randomly assigned to being asked either the Democratic or Republican party question first; the question order remained the same for any subsequent articles the worker rated. Finally, we assigned each article a partisanship score between –1 and 1, where a negative rating indicates that the article is net left-leaning and a positive rating indicates that it is net right-leaning. Specifically, for an article’s depiction of the Democratic Party, the five-point scale from very positive to very negative is encoded as –1, –0.5, 0, 0.5, 1. Analogously, for an article’s depiction of the Republican Party, the scale is encoded as 1, 0.5, 0, –.0.5, –1. The score for each article is defined as the average over these two ratings. Thus, an average score of –1, for example, indicates that the article is very positive toward Democrats and very negative toward Republicans. The result of this procedure is a large, representative sample of political news articles, with direct human judgments on partisanship and article topic.
Keyword:: news media, media bias, crowdsourcing, and machine learning
Citation to related publication:: https://academic.oup.com/poq/article-abstract/80/S1/250/2223443/?redirectedFrom=fulltext Ceren Budak, Sharad Goel, Justin M. Rao, Fair and Balanced? Quantifying Media Bias through Crowdsourced Content Analysis, Public Opinion Quarterly, Volume 80, Issue S1, 2016, Pages 250–271, https://doi.org/10.1093/poq/nfw007
Discipline:: Social Sciences
Title:: Quantifying News Media Bias through Crowdsourcing and Machine Learning Dataset

Quantum-Mechanical Determination of the Incorporation of Pentavalent Plutonium into Carbonate and Sulfate Minerals

Creator:: Gebarski, Benjamin B. and Becker, Udo
Description:: Files are uploaded as crystallographic information files (.cif), the standard text file format for representing crystallographic information. These files contain the optimized molecular models for pentavalent plutonium incorporation reactions into/onto barite, anglesite, celestine, anhydrite, aragonite, and calcite host minerals.
Keyword:: actinide, quantum mechanics, molecular model, plutonium, incorporation, surface, radioactive, contamination, and nuclear waste
Citation to related publication:: Gebarski, B. B. and Becker, U. Quantum-Mechanical Determination of the Incorporation of Pentavalent Plutonium into Carbonate and Sulfate Minerals. (2019) Geochimica et Cosmochimica Acta.
Discipline:: Science
Title:: Quantum-Mechanical Determination of the Incorporation of Pentavalent Plutonium into Carbonate and Sulfate Minerals

Data from Editorial on Impact of Special Collections in JGR Space Physics

Creator:: Liemohn, Michael W and Wooden, Paige
Description:: Journals sometimes focus the attention of the research community by having a special collection, sometimes an entire special issue, devoted to a single topic. A reasonable question to ask is whether the extra effort of organizing, promoting, and maintaining the special collection is worthwhile. The paper that this data set accompanies examines paper impact in the Journal of Geophysical Research Space Physics, separating the special collection papers from the non-special-collection submissions. The conclusion is that special collections are worth the extra work.
Keyword:: journal special collections, bibliometrics, citations, and downloads
Citation to related publication:: Liemohn, M. W., & Wooden, P. (2019). Editorial: Impact of special collections in JGR Space Physics. Journal of Geophysical Research Space Physics. https://doi.org/10.1002/essoar.10501036.2
Discipline:: Science
Title:: Data from Editorial on Impact of Special Collections in JGR Space Physics

Mars Thermospheric Responses to a Global Dust Storm (PEDE-2018): Mars Global Ionosphere-Thermosphere Model (M-GITM) Simulated Datasets for Comparison to MAVEN Spacecraft Measurements

Creator:: Bougher, S. W. (CLaSP Department, U. of Michigan), Roeten, K. J. (CLaSP Department, U. of Michigan), and Sharrar, R. (Astronomy Department, U. of Michigan)
Description:: The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking daily (systematic) measurements of the densities and temperatures in the upper atmosphere of Mars between about 140 to 240 km above the surface. Wind measurement campaigns are also conducted once per month for 5-10 orbits. These densities, temperatures and winds change with time (e.g. season, local time) and location, and sometimes fluctuate quickly. Global dust storm events are also known to significantly impact these density, temperature and wind fields in the Mars thermosphere. Such global dust storm period measurements can be compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. This is the first detailed comparison between direct global dust storm period measurements in the upper atmosphere of Mars and simulated MGITM fields and is important because it can help to inform us what physical processes are acting on the upper atmosphere during such large dust events. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars also provides key context for understanding how the atmosphere behaves as a whole system. A basic version of the M-GITM code can be found on Github as follows: https:/github.com/dpawlows/MGITM and About 4 months of Neutral Gas and Ion Mass Spectrometer (NGIMS) measurements of densities and winds have been made by the MAVEN team during the summer of 2018 (Elrod et al., 2019). Nine reference measurement intervals during this global dust storm (1-June through 30-August 2018) are selected for detailed study (Elrod et al. 2019). The Mars conditions for these nine intervals have been used to launch corresponding M-GITM code simulations, yielding 3-D neutral density, temperature and wind fields for comparison to these NGIMS measurements. The M-GITM datacubes used to extract the density, temperature and neutral winds, along the trajectory of each orbit path between 140 and 240 km, are provided in this Deep Blue Data archive. README files are provided for each datacube, detailing the contents of each file. A general README file is also provided that summarizes the inputs and outputs of the M-GITM code simulations for this study.
Keyword:: Mars, MAVEN Spacecraft, Mars Thermosphere, and Mars Global Dust Storm of 2018
Citation to related publication:: Elrod, M. K., S. W. Bougher, K. Roeten, R. Sharrar, J. Murphy, Structural and Compositional Changes in the Upper Atmosphere related to the PEDE-2018 Dust Event on Mars as Observed by MAVEN NGIMS, Geophys. Res. Lett., (2019). doi: 10.1029/2019GL084378. Jain, S. K., S. W. Bougher, J. Deighan, N. M. Schneider, F. Gonzalez-Galindo, A. I. F. Stewart, R. Sharrar, D. Kass, J. Murphy, and D. Pawlowski, Martian Thermospheric Warming Associated with the Planet Encircling Dust Storm Event of 2018, Geophys. Res. Lett., submitted (2019).
Discipline:: Engineering and Science
Title:: Mars Thermospheric Responses to a Global Dust Storm (PEDE-2018): Mars Global Ionosphere-Thermosphere Model (M-GITM) Simulated Datasets for Comparison to MAVEN Spacecraft Measurements

A Simulated Wind-field Dataset for Testing Energy Efficient Path-Planning Algorithms for UAVs in Urban Environment

Creator:: Baskar, Deepika and Gorodetsky, Alex
Description:: Studying the effect of wind on urban air mobility typically requires comprehensive fluid dynamics simulations in a realistic urban geometry. Motivated to enable wide-spread autonomous drone activity in urban centers, such studies have indeed been considered by several authors in the recent literature. However, the accessibility of these approaches to those with less fluid dynamics experience and/or without access to purpose built simulation tools has limited validation and application of the resulting path planning strategies. and The .dat files contain the flow variables for each of the 402240 points sampled from the region under study. For flow visualization purposes, the .dat files are readable using Tecplot Software.
Keyword:: UAM, Energy efficient path planning , CFD, and City of Boston
Citation to related publication:
Discipline:: Other and Engineering
Title:: A Simulated Wind-field Dataset for Testing Energy Efficient Path-Planning Algorithms for UAVs in Urban Environment

Action current data for investigating the development and organization of GnRH neuron activity in mice.

Creator:: Dulka, Eden A
Description:: This data is a subset of that originally produced as part of an effort to characterize GnRH neuron activity during prepubertal development in control and PNA mice and investigate the potential influences of sex and PNA treatment on this process (1). It was later used in (2) to further investigate the firing patterns of GnRH neurons in these categories of mice and determine how these patterns might differ based on age and treatment condition. The data files can be opened and examined using Wavemetric's Igor Pro software. Code used to further examine and visualize the data can be found at https://gitlab.com/um-mip/mc-project-code. This research was supported by National Institute of Health/Eunice Kennedy Shriver National Institute of Child Health and Human Development R01 HD34860 and P50 HD28934. (1) Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone (GnRH) neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3941-3953 (2) Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
Keyword:: action potential, Monte Carlo, polycystic ovary syndrome, puberty, and androgen
Citation to related publication:: Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone (GnRH) neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3941-3953 Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
Discipline:: Health Sciences
Title:: Action current data for investigating the development and organization of GnRH neuron activity in mice.

Michigan Big Woods research plot data

Creator:: Allen, David N, Vandermeer, John, Dick, Christopher W, Perfecto, Ivette, and Burnham, Robyn J
Description:: These data are in the standard ForestGEO format. Each of the three censuses has its own text file. Within that file each row represents a stem measured in that census. Species information can be found in the species file. The personnel responsible for this work can be found in the personnel file. See the readme file for more information.
Keyword:: Forest ecology, Oak-hickory forest, Mesophication, and Invasive species
Citation to related publication:: Allen, D, CW Dick, RJ Burnham, I Perfecto, and J Vandermeer. The Michigan Big Woods research plot at the Edwin S. George Reserve, Pinckney, MI, USA. Occasional Papers of the Museum of Zoology. In review.
Discipline:: Science
Title:: Michigan Big Woods research plot data

Dataset for "Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae"

Creator:: Hodgins-Davis, Andrea, Duveau, Fabien, Walker, Elizabeth, and Wittkopp, Patricia J
Description:: Understanding how phenotypes evolve requires disentangling the effects of mutation generating new variation from the effects of selection filtering it. Tests for selection frequently assume that mutation introduces phenotypic variation symmetrically around the population mean, yet few studies have tested this assumption by deeply sampling the distributions of mutational effects for particular traits. Here, we examine distributions of mutational effects for gene expression in the budding yeast Saccharomyces cerevisiae by measuring the effects of thousands of point mutations introduced randomly throughout the genome. We find that the distributions of mutational effects differ for the ten genes surveyed and are inconsistent with normality. For example, all ten distributions of mutational effects included more mutations with large effects than expected for normally distributed phenotypes. In addition, some genes also showed asymmetries in their distribution of mutational effects, with new mutations more likely to increase than decrease the gene’s expression or vice versa. Neutral models of regulatory evolution that take these empirically determined distributions into account suggest that neutral processes may explain more expression variation within natural populations than currently appreciated.
Keyword:: gene expression, evolution, mutation, mutagenesis, regulatory evolution, YFP, reporter construct, yeast, TDH1, TDH2, TDH3, GPD1, OST1, PFY1, STM1, RNR1, and RNR2
Citation to related publication:: Hodgins-Davis, A., Duveau, F., Walker, E. A., & Wittkopp, P. J. (2019). Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae. BioRxiv, 551804. https://doi.org/10.1101/551804
Discipline:: Science
Title:: Dataset for "Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae"

Supplemental Data for "Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge"

Creator:: Tronson, Natalie C and Tchessalova, Daria
Description:: The main goal of this research was to identify potential molecular pathways that contribute to memory dysregulation and decline that persists long after illness or inflammation. We have previously established a subchronic immune challenge model that results in memory impairments months after the inflammatory challenge. This project aimed to determine whether memory impairments were accompanied by transcriptional dysregulation in memory related brain region (the hippocampus). These data show the differential gene expression as log2fold change (and p-value) in males and females 3 months after immune challenge (Supp Tables 1 and 2); after a subsequent immune challenge (Supp Tables 3 and 4); the differential regulation of genes in males and females (Supp Table 5); genes differentially expressed in the hippocampus of males and females at baseline (Supp Table 6) and the differential regulation of those genes in males and females after immune challenge (Supp Tables 7,8).
Keyword:: hippocampus, lipopolysaccharide, differential gene expression, RNA sequencing, neuroimmune, sex differences, learning and memory, and inflammation
Citation to related publication:: Tchessalova, D., & Tronson, N. C. (2019). Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge. BioRxiv, 566570. https://doi.org/10.1101/566570
Discipline:: Science and Health Sciences
Title:: Supplemental Data for "Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge"

GITM 2017 Eclipse Results

Creator:: Ridley, Aaron and Cnossen, Ingrid
Description:: These are modeling results of the thermospheric and ionospheric response to the solar eclipse of August 21, 2017. The results are discussed in a research paper published in the Journal of Geophysical Research (doi: 10.1029/2018JA026402) .
Citation to related publication:: Cnossen, I., Ridley, A. J., Goncharenko, L. P., and Harding, B. J.. ( 2019), The response of the ionosphere‐thermosphere system to the August 21, 2017 solar eclipse. J. Geophys. Res. Space Physics, 124. https://doi.org/10.1029/2018JA026402
Discipline:: Science
Title:: GITM 2017 Eclipse Results

Bulk sedimentary δ15N, total organic carbon (TOC), and total nitrogen (TN) for SPR0901-03KC

Creator:: Wang, Yi and Hendy, Ingrid L.
Description:: The dataset contains bulk sedimentary d15N, TOC, and TN data measured every 2 mm on the core SPR0901-03KC. Flood and turbidite layers are shaded with blue and orange in the files. and This work is supported by NSF OCE-1304327.
Keyword:: d15N, total organic carbon, nitrogen isotopes, SPR0901-03KC, and Santa Barbara Basin
Citation to related publication:: Wang, Y. , Hendy, I. L. and Thunell, R. (2019), Local and remote forcing of denitrification in the Northeast Pacific for the last 2000 years. Paleoceanography and Paleoclimatology. Accepted Author Manuscript. doi:10.1029/2019PA003577
Discipline:: Science
Title:: Bulk sedimentary δ15N, total organic carbon (TOC), and total nitrogen (TN) for SPR0901-03KC

Indirect effects of secondary organic aerosol on cirrus clouds

Creator:: Jialei Zhu and Joyce E. Penner
Description:: The dataset contains the Fortran programs applied in the latest CESM/IMPACT model as well as the data created from this model, which are used in the referenced paper.
Keyword:: Second organic aerosol, Radiative effect, and Cirrus cloud
Citation to related publication:: Zhu, J and Penner, J. E.: Indirect effects of secondary organic aerosol on cirrus clouds, (2019), submitted to Geophysical Research Letter.
Discipline:: Science
Title:: Indirect effects of secondary organic aerosol on cirrus clouds

Data and Data products for machine learning applied to solar flares

Creator:: Chen, Yang and Manchester, Ward IV
Description:: GOES_flare_list: contains a list of more than 10,000 flare events. The list has 6 columns, flare classification, active region number, date, start time end time, emission peak time, GOES_B_flare_list: contains time series data of SDO/HMI SHARP parameters for B class solar flares , GOES_MX_flare_list: contains time series data of SDO/HMI SHARP parameters for M and X class solar flares, SHARP_B_flare_data_300.hdf5 and SHARP_MX_flare_data_300.hdf5 files contain time series more than 20 physical variables derived from the SDO/HMI SHARP data files. These data are saved at a 12 minute cadence and are used to train the LSTM model., and B_HARPs_CNNencoded_part_xxx.hdf5 and M_X HARPs_CNNencoded_part_xxx.hdf5 include neural network encoded features derived from vector magnetogram images derived from the Solar Dynamics Observatory (SDO) Helioseismic and Magnetic Imager (HMI). These data files typically contains one or two sequences of magnetograms covering an active region for a period of 24h with a 1 hour cadence. We encode each magnetogram with frames of a fixed size of 8x16 with 512 channels.
Keyword:: machine learning, data science, and solar flare prediction
Citation to related publication:: Chen, Y., Manchester, W., Hero, A., Toth, G., DuFumier, B. Zhou, T., Wang, X., Zhu, H., Sun, Zeyu, Gombosi, T., Identifying Solar Flare Precursors Using Time Series of SDO/HMI Images and SHARP Parameters, Space Weather Journal, submitted
Discipline:: Engineering and Science
Title:: Data and Data products for machine learning applied to solar flares

Prenatal lead exposure, type 2 diabetes and cardiometabolic risk factors in Mexican children at age 10-18 years

Creator:: Liu, Y , Ettinger, AS, Téllez-Rojo, M, Sánchez, BN, Zhang, ZZ, Cantoral, A, and Hu, H
Description:: We used data collected from participants of the Early Life Exposures in Mexico to ENvironmental Toxicants (ELEMENT) study, which consists of three sequentially-enrolled birth cohorts of pregnant women. Research protocols of this study were approved by the Institutional Review Board at University of Michigan and the Mexico National Institute of Public Health. We obtained informed consent from mothers and informed assent from children prior to enrollment.
Citation to related publication:
Discipline:: Health Sciences
Title:: Prenatal lead exposure, type 2 diabetes and cardiometabolic risk factors in Mexican children at age 10-18 years

Metal pad instability in liquid metal batteries. animations of computed flow regimes

Creator:: Linyan, Xiang and Oleg, Zikanov
Description:: The Liquid Metal Battery (LMB), a promising energy-storage device that contains liquid-metal interior, is studied numerically in the paper. The metal pad roll instability was modeled based on the open-source CFD software, OpenFOAM. It's based on the solver for simulations of incompressible multiphase flows multiphaseInterFoam modified to include the electromagnetic fields and account for the sharp variations of the electrical conductivity.
Keyword:: Liquid metal battery, Interfacial waves, Instability, and OpenFOAM
Citation to related publication:: Oleg Zikanov "Shallow water modeling of rolling pad instability in liquid metal batteries" THEORETICAL AND COMPUTATIONAL FLUID DYNAMICS, v.32, 2017, p.325-347 Linyan Xiang and Oleg Zikanov "Numerical simulation of rolling pad instability in liquid metal batteries" submitted to PHYSICS OF FLUIDS
Discipline:: Science
Title:: Metal pad instability in liquid metal batteries. animations of computed flow regimes

Seismograms of earthquake pairs in the injection experiment

Creator:: Huang, Yihe (University of Michigan); De Barros, Louis (Université Côte d’Azur)
Description:: Numerous small and moderate injection-induced earthquakes have been recorded in North America, Europe and Asia. Here we present a detailed analysis about microearthquakes in an in-situ injection-induced earthquake experiment, which provides an unprecedented opportunity to investigate the mechanisms of induced earthquakes. Our analysis illuminates meter-scale earthquake sources distributed in a network of preexisting rock fractures. The majority of induced earthquakes in our analysis happened when injection pressure reached a peak, indicating a direct response of rock fractures to fluid pressure perturbation. But the relatively low ratio of stress drop to crustal strength reveals that a very small fraction of the crustal shear strength is released by earthquakes, supporting the previous notion that fluid injection induces large aseismic deformation during the experiment. and Citation for dataset: Huang, Y., De Barros, L. (2019). Seismograms of earthquake pairs in the injection experiment [Data set]. University of Michigan - Deep Blue.
Keyword:: Induced seismicity
Citation to related publication:: Huang, Y., De Barros, L., Cappa, F. (2019). Illuminating the Rupturing of Microseismic Sources in an Injection‐Induced Earthquake Experiment. Geophysical Research Letters, 46(16), 9563-9572. https://doi.org/10.1029/2019GL083856
Discipline:: Science
Title:: Seismograms of earthquake pairs in the injection experiment

Raw Rheology data in supplement to the 2019 Macromolecules publication: "Assessing the Range of Validity of Current Tube Models Through Analysis of a Comprehensive Set of Star-Linear 1,4-Polybutadiene Polymer Blends"

Creator:: Hall, Ryan J. and Larson, Ronald G.
Description:: This is data is a large assortment of over 50 1,4-polybutadiene star-linear blends that can be used for assessing and developing predictive models. The data are presented in CSV files.
Keyword:: polymers, rheology, star-linear polymer blends, and shear rheology
Citation to related publication:
Discipline:: Engineering and Science
Title:: Raw Rheology data in supplement to the 2019 Macromolecules publication: "Assessing the Range of Validity of Current Tube Models Through Analysis of a Comprehensive Set of Star-Linear 1,4-Polybutadiene Polymer Blends"

Equilibrium Path Sampling Data for Two Glycosynthetic Reactions of Thermatoga maratima Alpha-L-Fucosidase D224G

Creator:: Burgin, Tucker and Mayes, Heather B.
Description:: This project aimed to discover and analyze the molecular mechanism of synthesis of two particular fucosylated oligosaccharide products in a mutant enzyme, Thermatoga maratima Alpha-L-Fucosidase D224G, whose wild type performs the opposite reaction (cleavage of fucosyl glycosidic bonds). Discovery of the mechanism was performed using an unbiased simulations method known as aimless shooting, whereas analysis of the mechanism in terms of the energy profile was performed using a separate method known as equilibrium path sampling. The data here concerns the latter method. and The contents of the atesa_master.zip are the ATESA GitHub project. A Python program for automating transition path sampling with aimless shooting using Amber. https://github.com/team-mayes/atesa
Keyword:: Equilibrium Path Sampling, Transition Path Sampling, Enzymatic Mechanism, and GH29
Citation to related publication:: 10.1039/C8RE00240A
Discipline:: Engineering
Title:: Equilibrium Path Sampling Data for Two Glycosynthetic Reactions of Thermatoga maratima Alpha-L-Fucosidase D224G

Lu-177 patients CT images and contours dataset for medical image segmentation

Creator:: Lim, Hongki and Dewaraja, Yuni K.
Description:: Internally administered targeted radionuclide therapy (TRT) with radio-labelled targeting molecules that deliver cytotoxic radiation to tumor has been used successfully to treat multiple cancers. Lu-177, used increasingly in TRT, emits both beta particles that deliver the therapeutic effect. FDA recently approved a fixed activity (4 cycles of 7.4 GBq/cycle as in NETTER -1) administered every 8 weeks. With the patient studies under this treatment, we collected CT images and corresponding volume of interest (organs, lesions) contours.
Keyword:: Lu-177, CT, Segmentation, Organ, Tumor, Label
Citation to related publication:
Discipline:: Health Sciences
Title:: Lu-177 patients CT images and contours dataset for medical image segmentation

Simulated CO2 dataset using the atmospheric transport model GEOSChem v12.0.0: Response to regional land carbon fluxes

Creator:: Basile, Samantha, Lin, Xin, and Keppel-Aleks, Gretchen
Description:: Files contain the atmospheric CO2 mole fraction responses to land flux type (HRcasa, HRcorpse, HRmimics) and land flux region (latband variable). Land flux regions are categorized as: Northern Hemisphere high latitudes (NHL; 61 to 90°N), midlatitudes (NML; 24 to 60°N), tropics (NT; 1 to 23°N), Southern Hemisphere tropics (ST; 0 to 23°S), and extratropics (SE; 24 to 90°S). See the README file for how these land flux region definitions relate to the file's latband variable. and To cite dataset: Basile, S., Lin, X., Keppel-Aleks, G. (2019). Simulated CO2 dataset using the atmospheric transport model GEOSChem v12.0.0: Response to regional land carbon fluxes [Data set]. University of Michigan - Deep Blue. https://doi.org/10.7302/xjzc-xy05
Keyword:: carbon dioxide, soil heterotrophic respiration, GEOSChem, HR, CO2, CASA-CNP, CORPSE, and MIMICS
Citation to related publication:
Discipline:: Science
Title:: Simulated CO2 dataset using the atmospheric transport model GEOSChem v12.0.0: Response to regional land carbon fluxes

Global modelling of secondary organic aerosol (SOA) with organic nucleation

Creator:: Zhu, Jialei and Penner, Joyce E.
Description:: The dataset contains the Fortran programs applied in the latest CESM/IMPACT model as well as the data created from this model, which are used in the referenced paper.
Keyword:: Organic nucleation, CESM/IMPACT, and SOA
Citation to related publication:: Zhu, J. and Penner, J. E. : Global modelling of secondary organic aerosol (SOA) with organic nucleation, (2019), submitted to Journal of Geophysical Research-Atmosphere.
Discipline:: Science
Title:: Global modelling of secondary organic aerosol (SOA) with organic nucleation

JGR Biogeosciences 2019 Gridded and single-point CLM5 dataset

Creator:: dos Santos, Thiago, Steiner, Allison, Keppel-Aleks, Gretchen, and De Roo, Roger
Description:: Model simulations were conducted to investigate the role of soil moisture on the terrestrial carbon and water cycles. The data are composed of NetCDF files generated by the simulations that contain the data variables analyzed in the paper. and CLM5 Documentation - http://www.cesm.ucar.edu/models/cesm2/land/.
Keyword:: Soil moisture, Community Land Model 5, Latent heat, GPP, Gross primary productivity, and Fluxnet
Citation to related publication:
Discipline:: Science
Title:: JGR Biogeosciences 2019 Gridded and single-point CLM5 dataset

Survey Distributional Methods Analyses Data

Creator:: Xu, Xuecong, Yan, Xiang , and Dillahunt, Tawanna R.
Description:: We compared the response rates, cost, and the average income of participants pertaining to 6 different survey distribution methods used in an initial study about mobility-on-demand services. We used the data to identify survey and recruitment methods that are more effective in reaching hard-to-reach populations. All the raw data used for calculations and the calculations themselves can be found in the attached spreadsheets. and Initial analyses have identified in-person onsite recruitment as one of the better methods of reaching hard-to-reach populations, and is calling for continued work in improving research methods in the field of HCI.
Keyword:: survey
Citation to related publication:: Yan, X., Zhao, X., Han, Y., and Hentenryck, P. V. (2019). Mobility-on-demand versus fixed-route transit systems: an evaluation of traveler preferences in low-income communities. https://poverty.umich.edu/files/2019/02/Yan_et_al_WorkingPaper_Preference_for_mobility_on_demand.pdf Atkinson, R., and Flint, J. Accessing Hidden and Hard-to-Reach Populations: Snowball Research Strategies. "Social Research Update" 33 (Jan 2001). Buranyi, S. Rise of the racist robots: how ai is learning all our worst impulses, Aug 2017. Retrieved June 11, 2019 from https://www.theguardian.com/inequality/2017/aug/08/rise-of-the-racist-robots-how-ai-is-learning-all-our-worst-impulses. Dillahunt, T. R., Erete, S., Galusca, R., Israni, A., Nacu, D., and Sengers, P. Reflections on design methods for underserved communities. In Companion of the 2017 ACM Conference on Computer Supported Cooperative Work and Social Computing (New York, NY, USA, 2017), CSCW ’17 Companion, ACM, pp. 409–413. Erete, S., Israni, A., and Dillahunt, T. An intersectional approach to designing in the margins. Interactions 25, 3 (Apr. 2018), 66–69. Foster, A. Concerning issue with driverless cars, Mar 2019. Retrieved June 11, 2019 from https://www.news.com.au/technology/innovation/motoring/on-the-road/driverless-cars-may-be-more-likely-to-hit-darkskinned-people-study-finds/news-story/b19959d01ef865f15bb336275b8903e8. Johnston, L. G., and Sabin, K. Sampling hard-to-reach populations with respondent driven sampling. Methodological Innovations Online 5, 2 (aug 2010), 38.1–48. Macaulay, A. C., Commanda, L. E., Freeman, W. L., Gibson, N., McCabe, M. L., Robbins, C. M., and Twohig, P. L. Participatory research maximises community and lay involvement. BMJ 319, 7212 (sep 1999), 774–778. Maestre, J. F., Eikey, E. V., Warner, M., Yarosh, S., Pater, J., Jacobs, M., Marcu, G., and Shih, P. C. Conducting research with stigmatized populations: Practices, challenges, and lessons learned. In Companion of the 2018 ACM Conference on Computer Supported Cooperative Work and Social Computing (2018), ACM, pp. 385–392. Paterson, J. M., and Maker, Y. Why does artificial intelligence discriminate?, Jun 2019. Retrieved June 11, 2019 from https://pursuit.unimelb.edu.au/articles/why-does-artificial-intelligence-discriminate. Strohmayer, A., Laing, M., and Comber, R. Technologies and social justice outcomes in sex work charities: fighting stigma, saving lives. In Proceedings of the 2017 CHI Conference on Human Factors in Computing Systems (2017), ACM, pp. 3352–3364. Sydor, A. Conducting research into hidden or hard-to-reach populations. Nurse researcher 20, 3 (2013).
Discipline:: General Information Sources
Title:: Survey Distributional Methods Analyses Data

Data-driven approaches to managing uncertain load control in sustainable power systems (project outputs)

Creator:: Bowen Li, Yiling Zhang, Siqian Shen, and Johanna Mathieu
Description:: The project outputs summarize all the publications, talks, and codes we accomplished under this NSF funding. In the project, we develop methodologies to manage uncertainty in future electric power systems and quantify how uncertainty affects power system sustainability. and Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149653
Keyword:: chance constraint, distributionally robust optimization, optimal power flow, demand response, and unimodality
Citation to related publication:: Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149653
Discipline:: Engineering
Title:: Data-driven approaches to managing uncertain load control in sustainable power systems (project outputs)

Space Weather Modeling Framework (SWMF) Simulation of Sep 7 2017 Geomagnetic Storm

Creator:: Wang, Zihan
Description:: SWMF is used to study the segmentation of SED plume into polar cap patches during the geomagnetic storm on Sep 7, 2017. The database includes the 3D output in the upper atmosphere from GITM, the 2D output from Ionospheric Electrodynamics (IE) and 3D output from BATSRUS. The output from GITM can be read with thermo_batch_new.pro. The output from IE can be opened with Spacepy at https://pythonhosted.org/SpacePy/. The output from BATSRUS can be opened with tecplot. More details can be found in Readme.txt.
Keyword:: MHD and Ionosphere
Citation to related publication:: Segmentation of Storm Enhanced Density (SED) by Boundary Flows Associated with Partial Ring current, Wang et. al, GRL, 2019
Discipline:: Science
Title:: Space Weather Modeling Framework (SWMF) Simulation of Sep 7 2017 Geomagnetic Storm

Demand response algorithms to improve electric power system stability margins

Creator:: Yao, Mengqi, Mathieu, Johanna L., Hiskens, Ian A., Molzahn, Daniel K., Koorehdavoudi, Kasra , and Roy, Sandip
Description:: The files include all the published paper and presentation source codes. Please install Matpower before running the code. The Matpower version is 5.1, which can be found in https://matpower.org/download/ Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/150104
Keyword:: Demand response, Optimal power flow, Power system voltage stability, and Power system small signal stability L
Citation to related publication:: https://ieeexplore.ieee.org/document/8686211 https://ieeexplore.ieee.org/abstract/document/7980798 https://pdfs.semanticscholar.org/a83a/cb9c9af878f8b5d77f4b4230dfb5bd8c5325.pdf https://ieeexplore.ieee.org/abstract/document/8619091 https://ieeexplore.ieee.org/abstract/document/8262731
Discipline:: Engineering
Title:: Demand response algorithms to improve electric power system stability margins

Inferring the behavior of distributed energy resources from incomplete measurements (project outputs)

Creator:: Ledva, Gregory S., Zhe, Du, Peterson, Sarah, Balzano, Laura, and Mathieu, Johanna L.
Description:: This is the code that resulted from NSF grant ECCS-1508943, "Inferring the behavior of distributed energy resources from incomplete measurements." The project focused on developing control, estimation, and modeling methods for residential demand response and electric distribution networks. The talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149480
Keyword:: online learning, energy disaggregation, residential demand response, networked control, Kalman filter, and frequency regulation
Citation to related publication:: Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Inferring the behavior of distributed energy resources with online learning." 2015 53rd Annual Allerton Conference on Communication, Control, and Computing (Allerton). IEEE, 2015. Ledva, Gregory S., and Johanna L. Mathieu. "A linear approach to manage input delays while supplying frequency regulation using residential loads." 2017 American Control Conference (ACC). IEEE, 2017. Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Exploring Connections Between a Multiple Model Kalman Filter and Dynamic Fixed Share with Applications to Demand Response." 2018 IEEE Conference on Control Technology and Applications (CCTA). IEEE, 2018. Ledva, Gregory S., et al. "Disaggregating Load by Type from Distribution System Measurements in Real Time." Energy Markets and Responsive Grids. Springer, New York, NY, 2018. 413-437. Ledva, Gregory S., Sarah Peterson, and Johanna L. Mathieu. "Benchmarking of Aggregate Residential Load Models Used for Demand Response." 2018 IEEE Power & Energy Society General Meeting (PESGM). IEEE, 2018. Ledva, Gregory S., et al. "Managing communication delays and model error in demand response for frequency regulation." IEEE Transactions on Power Systems 33.2 (2018): 1299-1308. Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Real-time energy disaggregation of a distribution feeder's demand using online learning." IEEE Transactions on Power Systems 33.5 (2018): 4730-4740. Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149480
Discipline:: Engineering
Title:: Inferring the behavior of distributed energy resources from incomplete measurements (project outputs)

Dataset related to 'Effects of Metamorphism and Metasomatism on Manganese Mineralogy: Examples from the Transvaal Supergroup'

Creator:: Johnson, Jena E., Webb, Samuel M., Condit, Cailey B., Beukes, Nicolas J., and Fischer, Woodward W.
Description:: Manganese in the sedimentary record has been interpreted by many as a powerful redox proxy for paleoenvironments, and yet very little work has been done to ensure that the manganese-rich minerals in the rock record are actually recording primary signals. In the accompanying manuscript, we present an in-depth characterization of the manganese mineralogy from two correlated regions recording the Transvaal Supergroup in South Africa with markedly different alteration histories to investigate if there can be post-depositional emplacement of manganese-rich minerals. The data uploaded here are X-ray absorption spectra of (1) manganese standard minerals that were useful in our analyses and (2) minerals from an important well-characterized sample that may be useful as comparative standards in future studies.
Keyword:: manganese and X-ray absorption spectroscopy
Citation to related publication:: J.E. Johnson, S.M. Webb, C.B. Condit, N.J. Beukes, W.W. Fischer; Effects of metamorphism and metasomatism on manganese mineralogy: Examples from the Transvaal Supergroup. South African Journal of Geology doi: https://doi.org/10.25131/sajg.122.0034
Discipline:: Science
Title:: Dataset related to 'Effects of Metamorphism and Metasomatism on Manganese Mineralogy: Examples from the Transvaal Supergroup'

Enhanced word embeddings using multi-semantic representation through lexical chains

Creator:: Ruas, Terry, Ferreira, Charles H. P., Grosky, William, França, Fabrício O., and Medeiros, Débora M. R,
Description:: The relationship between words in a sentence often tell us more about the underlying semantic content of a document than its actual words, individually. Recent publications in the natural language processing arena, more specifically using word embeddings, try to incorporate semantic aspects into their word vector representation by considering the context of words and how they are distributed in a document collection. In this work, we propose two novel algorithms, called Flexible Lexical Chain II and Fixed Lexical Chain II that combine the semantic relations derived from lexical chains, prior knowledge from lexical databases, and the robustness of the distributional hypothesis in word embeddings into a single decoupled system. In short, our approach has three main contributions: (i) unsupervised techniques that fully integrate word embeddings and lexical chains; (ii) a more solid semantic representation that considers the latent relation between words in a document; and (iii) lightweight word embeddings models that can be extended to any natural language task. Knowledge-based systems that use natural language text can benefit from our approach to mitigate ambiguous semantic representations provided by traditional statistical approaches. The proposed techniques are tested against seven word embeddings algorithms using five different machine learning classifiers over six scenarios in the document classification task. Our results show that the integration between lexical chains and word embeddings representations sustain state-of-the-art results, even against more complex systems. Github: https://github.com/truas/LexicalChain_Builder
Keyword:: document classification, lexical chains, word embeddings, synset embeddings, chain2vec, and natural language processing
Citation to related publication:
Discipline:: Engineering, Science, and Other
Title:: Enhanced word embeddings using multi-semantic representation through lexical chains

Developing Writers Writing Samples

Creator:: Sweetland Center for Writing
Description:: The writing samples included in this folder were collected as part of a longitudinal study in writing development published in Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). Writing samples were chosen and uploaded by students as part of the study and come from lower and upper level courses. To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890.
Keyword:: writing, writing sample, and developing writers
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890 This data set is related to "Developing Writers: Interview Transcripts" available at: https://deepblue.lib.umich.edu/data/concern/data_sets/sn009x784?locale=en
Discipline:: Humanities
Title:: Developing Writers Writing Samples

Developing Writers Interview Transcripts

Creator:: Sweetland Center for Writing
Description:: The interviews included in this folder were conducted as part of a longitudinal study in writing development published in Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). Interviews were conducted upon students' entry into the study (files labelled "entry") and exit from the study (files labelled "exit"). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890 and the website https://www.developingwritersbook.org/pages/about/about-the-study/.
Keyword:: interview, transcript, and developing writers
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890 This data set is related to "Developing Writers: Writing Samples" available at: https://deepblue.lib.umich.edu/data/concern/data_sets/r207tp36h?locale=en
Discipline:: Humanities
Title:: Developing Writers Interview Transcripts

Multi-Sense embeddings through a word sense disambiguation process

Creator:: Ruas, Terry, Grosky, William, and Aizawa, Akiko
Description:: This data set is a collection of word similarity benchmarks (RG65, MEN3K, Wordsim 353, simlex999, SCWS, yp130, simverb3500) in their original format and converted into a cosine similarity scale. In addition, we have two Wikpedia Dumps from 2010 (April) and 2018 (January) in which we provide the original format (raw words), converted using the techniques described in the paper (MSSA, MSSA-D and MSSA-NR) (title in this repository), and also the word embeddings models for 300d and 1000d using a word2vec implementation. A readme.txt is provided with more details for each file.
Keyword:: multi-sense embeddings, MSSA, word2vec, wikipedia dump, synset, and natural language processing
Citation to related publication:: https://doi.org/10.1016/j.eswa.2019.06.026
Discipline:: Other
Title:: Multi-Sense embeddings through a word sense disambiguation process

Effect of financial incentives on head CT use dataset

Creator:: Meurer, William
Description:: SPSS is required to access processed dataset in .sav format. Model output is provided as a word document, and Qualtrics survey instrument is included as PDF and .docx, where .docx version contains survey logic and question numbers.
Keyword:: Diagnostic Testing, Emergency Medicine, and Financial Incentives
Citation to related publication:: Iyengar, R., Winkels, J., Smith, C. M., Meka, A. P., MD, Porath, J. D., MD, & Meurer, W. J., MD, MS. (2019, January 21). The Effect of Financial Incentives on Patient Decisions to Undergo Low-Value Head CT Scans. https://doi.org/10.31219/osf.io/4mdfw
Discipline:: Health Sciences
Title:: Effect of financial incentives on head CT use dataset

Ganymede simulation with MHD-EPIC model

Creator:: Hongyang Zhou
Description:: The outputs include the steady state solutions for all Galileo flybys, the particle information for plotting the distribution functions near the reconnection site, the particle and field data for mapping the energetic flux densities, and 3D files for visualizing the whole simulation domain. More details can be found in Readme.txt.
Keyword:: MHD and PIC
Citation to related publication:
Discipline:: Science
Title:: Ganymede simulation with MHD-EPIC model

Authenticated Boot Acceleration Algorithm

Creator:: Nasser, Ahmad and Gumise, Wonder
Description:: The work on accelerating authenticated boot for embedded system resulted in designing an algorithm in python to perform the random address generation and cryptographic MAC calculation. The Sampled Boot schemes implemented in this package allow a significant reduction of the time needed to authenticate firmware images during startup, while still retaining a high degree of trust. This is particularly useful for automotive applications in which startup time constraints make secure boot a time prohibitive process. and Citation for this dataset: Nasser, A., Gumise, W. (2019). Authenticated Boot Acceleration Algorithm [Code and data]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/yeh1-1x17
Keyword:: Trusted Computing, IOT security, Embedded Security, and Cyber Physical Systems
Citation to related publication:: Nasser, A., Ma, D., Gumise, W.J. (2019). Accelerated Secure Boot for Realtime Embedded Safety Systems.
Discipline:: Science
Title:: Authenticated Boot Acceleration Algorithm

12 hour data for magnetospheric simulations for a multifluid plasma for 8 different configurations

Creator:: Trung, Huy-Sinh, Liemohn, Michael W, and Ilie, Raluca
Description:: The goal of this research was to understand structures where the solar wind plasma contribution to the total plasma was equal to the ionospheric plasma. This simulation was performed over a simulation time of 12 hours for 4 different plasma compositions for 2 different solar wind profiles., The SWMF used the Block Adaptive Tree Solar wind Roe-type Upwind Scheme version 9.20. It can be found at http://csem.engin.umich.edu/tools/swmf/downloads.php. These data can be processed using the simulation code deposited at the Deep Blue Data record indicated in the "Citation to related material" field., and To cite this data set: Trung, H.-S., Liemohn, M., W., Ilie, R. (2019). 12 hour data for magnetospheric simulations for a multifluid plasma for 8 different configurations [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/fwq2-ey41
Keyword:: Space Physics, Magnetospheres, and 3D
Citation to related publication:: Trung, H.-S., Liemohn, M.W. Ilie, R. (2019). Steady State Characteristics of the Terrestrial Geopause [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/7w13-kq27
Discipline:: Science
Title:: 12 hour data for magnetospheric simulations for a multifluid plasma for 8 different configurations

Epileptogenesis modulates spontaneous and responsive brain state dynamics - Code & Data

Creator:: Crisp, Dakota N., Cheung, Warwick, Gliske, Stephen V., Lai, Alan, Freestone, Dean R., Grayden, David B., Cook, Mark J., and Stacey, William C.
Description:: The data and the scripts are to show that seizure onset dynamics and evoked responses change over the progression of epileptogenesis defined in this intrahippocampal tetanus toxin rat model. All tests explored in this study can be repeated with the data and scripts included in this repository. and Dataset citation: Crisp, D.N., Cheung, W., Gliske, S.V., Lai, A., Freestone, D.R., Grayden, D.B., Cook, MJ., Stacey, W.C. (2019). Epileptogenesis modulates spontaneous and responsive brain state dynamics [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/r6vg-9658
Keyword:: evoked response, stimulation, bifurcation, epilepsy, seizure, divergence, and dynamics
Citation to related publication:
Discipline:: Engineering, Science, and Health Sciences
Title:: Epileptogenesis modulates spontaneous and responsive brain state dynamics - Code & Data

Physical properties and magnetic susceptibility for SPR0901-04BC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for SPR0901-04BC (34.2816°N, 120.0415°W, 588 m water depth) measured on the multisensor track (MST). SPR0901-04BC was collected by the research vessel R/V Sproul off Southern California in 2009.1. The study is supported by NSF OCE-0752093.
Keyword:: physical properties, magnetic susceptibility, Santa Barbara Basin, and SPR0901-04BC
Citation to related publication:
Discipline:: Science
Title:: Physical properties and magnetic susceptibility for SPR0901-04BC

Epidynamics: Navigating the map of seizure dynamics - Code & Data

Creator:: Crisp, Dakota N., Saggio, Maria L., Scott, Jared, Stacey, William C., Nakatani, Mitsuyoshi, Gliske, Stephen V., and Lin, Jack
Description:: This data and scripts are meant to test and show seizure differentiation based on bifurcation theory. A zip file is included which contains real and simulated seizure waveforms, Matlab scripts, and metadata. The matlab scripts allow for visual review validation and objective feature analysis. The file “README.txt” provides more detail about each individual file within the zip file. and Data citation: Crisp, D.N., Saggio, M.L., Scott, J., Stacey, W.C., Nakatani, M., Gliske, S.F., Lin, J. (2019). Epidynamics: Navigating the map of seizure dynamics - Code & Data [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/ejhy-5h41
Keyword:: Bifurcation, Epilepsy, Seizure, and Divergence
Citation to related publication:
Discipline:: Engineering, Science, and Health Sciences
Title:: Epidynamics: Navigating the map of seizure dynamics - Code & Data

Dataset for "Weathering and paleosol formation in the 1.1Ga Keweenawan Rift"

Creator:: Mitchell, R.L. and Sheldon, Nathan D.
Description:: Samples from a road cut section were analyzed. New paleosols were discovered.
Keyword:: Paleosols, Precambrian, Keweenawan, Paleoenvironments, and Midcontinental Rift
Citation to related publication:: Mitchell, R.L., Sheldon, N.D., 2009, Weathering and paleosol formation in the 1.1. Ga Keweenawan Rift: Precambrian Research 168, p. 271–283. https://doi.org/10.1016/j.precamres.2008.09.013
Discipline:: Science
Title:: Dataset for "Weathering and paleosol formation in the 1.1Ga Keweenawan Rift"

Dataset from "Using Stable Carbon and Nitrogen Isotopes of Hair to Teach About Sustainable Agriculture Through Active Learning"

Creator:: Cotton, Jennifer M. and Sheldon, Nathan D.
Description:: These spreadsheets contain all data and data by diet type, meat consumption, gender, and British comparison for the classroom activity described in the accompanying paper.
Keyword:: Sustainable agriculture , Active learning, Stable isotopes, and Large enrollment
Citation to related publication:: Cotton, J.M., and Sheldon, N.D., 2013, Using stable carbon and nitrogen isotopes of hair to teach about sustainable agriculture through active learning: Journal of Geoscience Education 61, 59–67. https://doi.org/10.5408/12-309.1
Discipline:: Science
Title:: Dataset from "Using Stable Carbon and Nitrogen Isotopes of Hair to Teach About Sustainable Agriculture Through Active Learning"

Scanning X-ray fluorescence (XRF) for MV0811-14JC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes scanning X-ray fluorescence (XRF) data for the core MV0811-14JC (34.2818°N 120.0360°W, water depth: 582 m), which was collected by the research vessel R/V Melville off Southern California in 2008.11. The research is funded by NSF OCE-1304327.
Keyword:: scanning X-ray fluorescence, XRF, Santa Barbara Basin, and MV0811-14JC
Citation to related publication:
Discipline:: Science
Title:: Scanning X-ray fluorescence (XRF) for MV0811-14JC

Scanning X-ray fluorescence (XRF) for SPR0901-03KC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes scanning X-ray fluorescence (XRF) data for the core SPR0901-03KC (34.2832°N, 120.0401°W, 586 m water depth). SPR0901-03KC was collected by the research vessel R/V Sproul off Southern California in 2009.1. The research is funded by NSF OCE-0752093.
Keyword:: scanning X-ray fluorescence, XRF, Santa Barbara Basin, and SPR0901-03KC
Citation to related publication:
Discipline:: Science
Title:: Scanning X-ray fluorescence (XRF) for SPR0901-03KC

Scanning X-ray fluorescence (XRF) for SPR0901-04BC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes scanning X-ray fluorescence (XRF) data for the core SPR0901-04BC (34.2816°N, 120.0415°W, 588 m water depth). SPR0901-04BC was collected by the research vessel R/V Sproul off Southern California in 2009.1. This research is funded by NSF OCE-0752093.
Keyword:: scanning X-ray fluorescence, XRF, Santa Barbara Basin, and SPR0901-04BC
Citation to related publication:
Discipline:: Science
Title:: Scanning X-ray fluorescence (XRF) for SPR0901-04BC

Physical properties and magnetic susceptibility for SPR0901-unnamed

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for the box core SPR0901-unnamed (34.2816°N, 120.0415°W, 588 m water depth) measured on the multisensor track (MST). SPR0901-unnamed was collected by the research vessel R/V Sproul off Southern California in 2009.1.
Keyword:: physical properties, magnetic susceptibility, Santa Barbara Basin, and SPR0901-unnamed
Citation to related publication:
Discipline:: Science
Title:: Physical properties and magnetic susceptibility for SPR0901-unnamed

Physical properties and magnetic susceptibility for MV0811-14JC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for the jumbo piston core MV0811-14JC (34.2818°N 120.0360°W, water depth: 582 m) measured on the multisensor track (MST). MV0811-14JC was collected by the research vessel R/V Melville off Southern California in 2008.11. The study is supported by NSF OCE-1304327.
Keyword:: physical properties, magnetic susceptibility, Santa Barbara Basin, and MV0811-14JC
Citation to related publication:
Discipline:: Science
Title:: Physical properties and magnetic susceptibility for MV0811-14JC

Physical properties and magnetic susceptibility for SPR0901-03KC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for Kasten core SPR0901-03KC (34.2832°N, 120.0401°W, 586 m water depth) measured on the multisensor track (MST). SPR0901-03KC was collected by the research vessel R/V Sproul off Southern California in 2009.1. The study is supported by NSF OCE-0752093.
Keyword:: physical properties, magnetic susceptibility, Santa Barbara Basin, and SPR0901-03KC
Citation to related publication:
Discipline:: Science
Title:: Physical properties and magnetic susceptibility for SPR0901-03KC

Core photo for SPR-unnamed

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset contains the core photo for the box core SPR0901-unnamed (34.2816°N, 120.0415°W, 588 m water depth) off Southern California, retrieved in 2009.1 on R/V Sproul. The research is funded by NSF OCE-0752093. and Data citation: Hendy, I.L., Wang, Y. (2019). Core photo for SPR-unnamed [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/z0mn-cv27
Keyword:: core photo, Santa Barbara Basin, and SPR0901-unnamed
Citation to related publication:
Discipline:: Science
Title:: Core photo for SPR-unnamed

Core photos for MV0811-14JC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset contains core photos for the jumbo piston core MV0811-14JC (34.2818°N 120.0360°W, water depth: 582 m) retrieved in 2008.11 on R/V Melville off Southern California. MV0811-14JC contains 10 sections (section 1-10). Sections 1-3 were scanned at the LacCore Facility (National Lacustrine Core Facility) at University of Minnesota, while photos for section 4-10 were taken at Marine Geology Repository at Oregon State University. The study is funded by NSF-OCE 1304327. and Data citation: Hendy, I.L., Wang, Y. (2019). Core photos for MV0811-14JC [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/3m31-yb44
Keyword:: core photos, Santa Barbara Basin, and MV0811-14JC
Citation to related publication:
Discipline:: Science
Title:: Core photos for MV0811-14JC

Core photos for SPR0901-03KC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset include core photos for the Kasten core SPR0901-03KC (34.2832°N, 120.0401°W, 586 m water depth) retrieved in 2009.1 on R/V Sproul off Southern California. SPR0901-03KC contains two cores (core 1 and core 2), with each core cut into two sections (section 1 and section 2). The study is funded by NSF OCE-0752093. and Data citation: Hendy, I.L., Wang, Y. (2019). Core photos for SPR0901-03KC [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/3jrg-1m86
Keyword:: core photos, Santa Barbara Basin, and SPR0901-03KC
Citation to related publication:
Discipline:: Science
Title:: Core photos for SPR0901-03KC

Core photo for SPR0901-04BC

Creator:: Ingrid L. Hendy and Yi Wang
Description:: This dataset contains photo of the box core SPR0901-04BC (34.2816°N, 120.0415°W, 588 m water depth) retrieved from 2009.1 on the R/V Sproul. The study is funded by OCE-0752093. and Data citation: Hendy, I.L., Wang, Y. (2019). Core photo for SPR0901-04BC [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/9nxx-hd15
Keyword:: core photo, Santa Barbara Basin, and SPR0901-04BC
Citation to related publication:
Discipline:: Science
Title:: Core photo for SPR0901-04BC

Mars Thermospheric Neutral Winds: Mars Global Ionosphere-Thermosphere Model (M-GITM) Simulated Datasets for Comparison to MAVEN Spacecraft Measurements

Creator:: Bougher, Stephen W. (CLaSP Department, U. of Michigan) and Roeten, Kali J. (CLaSP Department, U. of Michigan)
Description:: The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking monthly measurements of the speed and direction of the winds in the upper atmosphere of Mars between about 140 to 240 km above the surface. The observed wind speeds and directions change with time and location, and sometimes fluctuate quickly. These measurements are compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. This is the first comparison between direct measurements of the winds in the upper atmosphere of Mars and simulated winds and is important because it can help to inform us what physical processes are acting on the observed winds. Some wind measurements have similar wind speeds or directions to those predicted by the M-GITM model, but sometimes, there are large differences between the simulated and measured winds. The disagreements between wind observations and model simulations suggest that processes other than normal solar forcing may become relatively more important during these observations and alter the expected circulation pattern. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars provides key context for understanding how the atmosphere behaves as a whole system. A basic version of the M-GITM code can be found on Github as follows: https:/github.com/dpawlows/MGITM and About 30 Neutral Gas and Ion Mass Spectrometer (NGIMS) wind campaigns (of 5 to 10 orbits each) have been conducted by the MAVEN team (Benna et al., 2019). Five of these campaigns are selected for detailed study (Roeten et al. 2019). The Mars conditions for these five campaigns have been used to launch corresponding M-GITM code simulations, yielding 3-D neutral wind fields for comparison to these NGIMS wind observations. The M-GITM datacubes used to extract the zonal and meridional neutral winds, along the trajectory of each orbit path between 140 and 240 km, are provided in this Deep Blue Data archive. README files are provided for each datacube, detailing the contents of each file. A general README file is also provided that summarizes the inputs and outputs of the M-GITM code simulations for this study.
Keyword:: Mars, MAVEN spacecraft, Mars thermosphere, and Mars global upper atmosphere winds
Citation to related publication:: Roeten, K. J., S. W. Bougher, M. Benna, P. R. Mahaffy, Y. Lee, D. Pawlowski, F. Gonzalez-Galindo, M. Lopez-Valverde, MAVEN/NGIMS thermospheric neutral wind observations: Interpretation using the M-GITM general circulation Model, J. Geophysical Research, submitted (2019)
Discipline:: Engineering and Science
Title:: Mars Thermospheric Neutral Winds: Mars Global Ionosphere-Thermosphere Model (M-GITM) Simulated Datasets for Comparison to MAVEN Spacecraft Measurements

Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame: experimental measurements and simulation results

Creator:: Wang, Qi, Elvati, Paolo, Kim, Doohyun, Johansson, K. Olof, Schrader, Paul E., Michelsen, Hope A., and Violi, Angela
Description:: Datasets for article in CARBON: Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame. The experiment VUV-AMS measurements ("VUV_AMS_C2H4_Counterflow.txt") consists aerosol mass spectra data from an atmospheric-pressure ethylene/oxygen/argon counterflow diffusion flame described in Johansson et al., Proc. Combust. Inst. 36, 799-806 (2017) doi:10.1016/j.proci.2016.07.130., The experiment VUV-MBMS measurements ("VUV_MBMS_C2H4_Counterflow.txt") consists gas-phase data from an atmospheric-pressure ethylene/oxygen/argon counterflow diffusion flame described in Johansson et al., Proc. Combust. Inst. 36, 799-806 (2017) doi:10.1016/j.proci.2016.07.130., 2D CFD simulation results by KAUST mechanism II ("CFD_KM2_results.xlsx") consists stabilized CFD gas-phase species profiles along different x,y,z coordinates. Species are given by mole fractions., The SNapS2 simulation results ("SNapS2_results.zip") consist streamline I (from fuel side), i (from oxidizer side), and middle (DFFO = 5.0mm) for producing results in Fig. 5, Fig. 6, and Table 1. Three folders under each streamline ("C5H6", "C6H5CH3", and "C6H6") represent simulations by using different seeds (cyclopentadiene, toluene, and benzene respectively). The text files inside each folder are a single trace (time-history) for one SNapS2 simulation. Text file name consists "starting time"+"."+"simulation number"+".txt". For example 0.041.25.txt meaning the 25th simulation starting at 0.041s. Four columns inside the text files represent time, molecular mass, reaction index, and SMILES (Simplified molecular-input line-entry system) of the molecule., and Data citation: Wang, Q., Elvati, P., Kim, D., Johansson, K.O., Schrader, P.E., Michelsen, H.A., Violi, A. (2019). Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame: experimental measurements and simulation results [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/69e6-cd20
Citation to related publication:: Wang, Q., Elvati, P., Kim, D., Johansson, K.O., Schrader, P.E., Michelsen, H.A., Violi, A., 2019. Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame. Carbon 149, 328–335. https://doi.org/10.1016/j.carbon.2019.03.017
Discipline:: Science
Title:: Spatial dependence of the growth of polycyclic aromatic compounds in an ethylene counterflow flame: experimental measurements and simulation results

Widespread and persistent deposition of iron formations for two billion years: Compilation Dataset

Creator:: Johnson, JE and Molnar, PH
Description:: This IF compilation was assembled from the existing literature to understand if preservation biases affected the record of iron formations.
Keyword:: Archean ocean chemistry, temporal record of iron formations, and early Earth iron cycle
Citation to related publication:: Johnson, J. E., & Molnar, P. H. ( 2019). Widespread and persistent deposition of iron formations for two billion years. Geophysical Research Letters, 46, 3327– 3339. https://doi.org/10.1029/2019GL081970
Discipline:: Science
Title:: Widespread and persistent deposition of iron formations for two billion years: Compilation Dataset

Data for Compensatory trans-regulatory alleles minimizing variation in TDH3 expression are common within Saccharomyces cerevisiae

Creator:: Wittkopp, Patricia J and Metzger, Brian P H
Description:: .zip file includes data files and R code used for analysis.
Citation to related publication:: http://biorxiv.org/cgi/content/short/566653v1
Discipline:: Science
Title:: Data for Compensatory trans-regulatory alleles minimizing variation in TDH3 expression are common within Saccharomyces cerevisiae

West African flora and fauna native terminologies

Creator:: Heath, Jeffrey
Description:: This is the flora-fauna lexical material obtained in the course of more general lexical and grammatical fieldwork on languages of central-eastern Mali (Dogon, Songhay, Bangime, Bozo). The spreadsheets in this work, duplicated in xlsx and csv formants, present our flora-fauna lexicons as of early 2019 for many languages of central-eastern Mali, and certain languages of southwestern Burkina Faso. The Malian data is in two spreadsheets (flora, fauna), while the Burkina data is in separate spreadsheets for flora, birds, fish, insects, lizards and snakes, and mammals. Please begin with the “readme” document.
Keyword:: flora,, fauna, lexicon, Mali, and Burkina Faso
Citation to related publication:: Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. https://dogonlanguages.org Christfried Naumann & Tom Güldemann & Steven Moran & Guillaume Segerer & Robert Forkel (eds.) 2015. Tsammalex: A lexical database on plants and animals. Leipzig: Max Planck Institute for Evolutionary Anthropology. https://tsammalex.clld.org
Discipline:: Humanities
Title:: West African flora and fauna native terminologies

Comparing turbulent mixing of atmospheric oxidants across model scales

Creator:: Li, Yang and Steiner, Allison
Description:: WRF-Chem simulation with 1.33 km resolution using the MYJ PBL scheme over the Baltimore-Washington region and WRF-Chem simulation with 1.33 km resolution using the YSU PBL scheme over the Baltimore-Washington region
Keyword:: LES, WRF-Chem, vertical mixing, oxidants, boundary layer dynamics
Citation to related publication:: Li, Y., Barth, M. C., and Steiner, A. L.: Comparing turbulent mixing of atmospheric oxidants across model scales, Atmospheric Environment, 199, 88-101, https://doi.org/10.1016/j.atmosenv.2018.11.004, 2018.
Discipline:: Science
Title:: Comparing turbulent mixing of atmospheric oxidants across model scales

Results from Morales et al. 2018 (JAS) - Orographic precipitation sensitivity analysis

Creator:: Morales, Annareli
Description:: The research that produced this data involves exploring the sensitivity of orographic precipitation to changes in microphysical parameters found in the Morrison microphysics scheme within CM1 model. These microphysical sensitivities are also tested within different environments. The tests can be described as "one-at-a-time" experiments, i.e., an individual parameter is perturbed while keeping the rest constant. Annareli Morales conducted this research for her PhD research while working at the Mesoscale and Microscale Meteorology lab at NCAR in Boulder, CO.
Keyword:: Orographic precipitation
Citation to related publication:: Morales, A., H. Morrison, and D. Posselt, 2018: Orographic precipitation response to microphysical parameter perturbations for idealized moist nearly neutral flow. Journal of Atmospheric Science, 75, 1933-1953, https://doi.org/10.1175/JAS-D-17-0389.1
Discipline:: Science
Title:: Results from Morales et al. 2018 (JAS) - Orographic precipitation sensitivity analysis

Modeled transient ionospheric upflow as driven by poleward moving auroral forms observed during the Rocket Experiment for Neutral Upwelling 2 (RENU2) campaign

Creator:: Burleigh, M.
Description:: Brightness from an all-sky imager has been used as a spatiotemporal constraint for auroral inputs selected from in situ rocket measurements which are used to drive the ionospheric model. This method allows for realistic ionospheric forcing that is not captured in traditional "on-off" methods of describing PMAFs. Transient forcing (simulated PMAFs) and steady forcing ("on-off") simulations have been generated for comparison.
Keyword:: Poleward moving auroral forms, High-latitude ionosphere, Ionospheric modeling, Transient forcing, PMAF, GEMINI-TIA, and RENU2
Citation to related publication:: Burleigh, M., Zettergren, M., Lynch, K., Lessard, M., Moen, J., Clausen, L., Kenward, D., Hysell, D., and Liemohn, M. (2019). Transient ionospheric upflow driven by poleward moving auroral forms observed during the Rocket Experiment for Neutral Upwelling 2 (RENU2) campaign. Geophysical Research Letters. (Submitted).
Discipline:: Science
Title:: Modeled transient ionospheric upflow as driven by poleward moving auroral forms observed during the Rocket Experiment for Neutral Upwelling 2 (RENU2) campaign

Lexical documents Tiefo-N language of Burkina Faso

Creator:: Heath, Jeffrey , Ouattara, Aminata , and Hantgan, Abbie
Description:: Our project, mainly on Dogon languages of Mali, has branched out to Burkina Faso with emphasis on documentation of the most endangered languages. Tiefo-N was studied on an emergency basis since it was down to two aging competent speakers. For additional comments and links to a reference grammar, see the readme file.
Keyword:: Gur languages, Tiefo, Tiefo-N language, and Lexicon
Citation to related publication:: Jeffrey Heath, Aminata Ouattara & Abbie Hantgan. Short grammar of Tiefo-N of Nyafogo (Gur, Burkina Faso). Language Description Heritage Library (MPI). http://ldh.clld.org/2017/01/01/escidoc2378140/ A copy of this publication is also available in Deep Blue: http://dx.doi.org/10.17617/2.2378140
Discipline:: Humanities
Title:: Lexical documents Tiefo-N language of Burkina Faso

Lexical spreadsheets Bangime language of Mali

Creator:: Heath, Jeffrey, Hantgan, Abbie , and Elders, Stefan
Description:: The work on the Bangime language, spoken by the Bangande people, was carried out as part of a larger linguistic fieldwork project focused on Dogon languages. Bangime is confirmed as a language isolate with no demonstrable linguistic relatives—possibly the only such isolate in West Africa.
Keyword:: Bangime, Mali, and Lexicon
Citation to related publication:: Heath & Hantgan. A grammar of Bangime. Berlin: de Gruyter, 2018. ISBN 978-3-11-055749-7
Discipline:: Humanities
Title:: Lexical spreadsheets Bangime language of Mali

Lexical spreadsheets Jalkunan language of Burkina Faso

Creator:: Heath, Jeffrey
Description:: Jalkunan is an endangered language of the Mande family, spoken in the village cluster of Blédougou in southwestern Burkina Faso. The lexical work complements a published grammar with texts. See the readme for further information.
Keyword:: Jalkunan, Burkina Faso, Mande languages, and Lexicon
Citation to related publication:: Heath, Jeffrey. A grammar of Jalkunan (Mande, Burkina Faso). 2017. http://hdl.handle.net/2027.42/139025
Discipline:: Humanities
Title:: Lexical spreadsheets Jalkunan language of Burkina Faso

Lexical spreadsheet comparative Dogon

Creator:: Heath, Jeffrey
Description:: Holistic linguistic fieldwork carried out on location in central-eastern Mali.
Keyword:: Lexicon, Mali, and Dogon
Citation to related publication:
Discipline:: Humanities
Title:: Lexical spreadsheet comparative Dogon

Adverse events associated with intra-hospital transport of critically-ill children: a systematic review dataset

Creator:: Haydar, Bishr and MacEachern, Mark
Description:: The research adheres to PRISMA-HARM recommendations for systematic reviews. The reproducible search strategies for all databases, the citation export files from all databases, and the eligibility screening decisions are included in the dataset.
Keyword:: Systematic review, Patient transportation, intrahospital, intra-hospital, and Critically ill patients
Citation to related publication:
Discipline:: Health Sciences
Title:: Adverse events associated with intra-hospital transport of critically-ill children: a systematic review dataset

Literature search files for review on lifestyle therapy for the management of atrial fibrillation

Creator:: MacEachern, Mark
Description:: The search data supports a literature review project on lifestyle therapies for the management of atrial fibrillation. The data included in the dataset are the reproducible search strategies (in docx) and the exported results of all citations from all databases (txt and ris files). These searches and exported result files contain all citations originating from the database searches that were considered for inclusion.
Keyword:: literature searches, atrial fibrillation, lifestyle therapy, and lifestyle therapies
Citation to related publication:: Abdul-Aziz AA, Altawil M, Lyon A, MacEachern M, Richardson CR, Rubenfire M, Pelosi F Jr, Jackson EA. Lifestyle Therapy for the Management of Atrial Fibrillation. Am J Cardiol. 2018 May 1;121(9):1112-1117. doi: 10.1016/j.amjcard.2018.01.023. PubMed PMID: 29650239. https://www.ncbi.nlm.nih.gov/pubmed/29650239
Discipline:: Health Sciences
Title:: Literature search files for review on lifestyle therapy for the management of atrial fibrillation

Judgment Accuracy Experiment Data

Creator:: Yan, Haoyang MI and Yates, J Frank
Description:: The research aims to demonstrate judgment accuracy about other individuals' socio-political opinions produced by prototype matching and base/shift heuristics or people's own strategies (control).
Keyword:: judgment accuracy and socio-political opinions
Citation to related publication:
Discipline:: Social Sciences
Title:: Judgment Accuracy Experiment Data

Data from: Adjuvant Radiation Improves Recurrence-Free Survival and Overall Survival in Adrenocortical Carcinoma

Creator:: Gharzai, Laila A, Green, Michael D, Griffith, Kent A, and Jolly, Shruti
Description:: Three sensitivity analyses were performed. First, a second matching step was performed in which two controls were selected for each case, where possible using a nearest neighbor and caliper metric. Controls needed to have propensity scores within 0.1 of the case to be selected. Thirty-eight of the 39 cases had at least one control using this method and for 36 cases two controls could be selected. The average difference between case and control propensity adjuvant RT was 0.008 (range 0.00003-0.095). A second sensitivity analysis was performed to guard against immortal time bias. In order to mitigate the possibility of this effect, cases known not to have undergone adjuvant RT have been screened for suitable follow-up without a recurrence (local or regional recurrence, metastatic failure, and/or death) to ensure that if adjuvant RT had been prescribed as part of the multi-modality treatment regimen, that it would have been initiated. Three months was selected as the mandatory follow-up time. One to one matching was carried out and all 39 cases were matched to a control. A third sensitivity analysis was performed to account for stage migration seen in control patients that presented to the University of Michigan with more advanced disease. Patients that underwent adjuvant radiation were matched one to one with control group patients who did not receive adjuvant radiation, and who had the same stage at diagnosis as compared to stage at University of Michigan presentation.
Keyword:: adenocortical carcinoma and English
Citation to related publication:
Discipline:: Health Sciences
Title:: Data from: Adjuvant Radiation Improves Recurrence-Free Survival and Overall Survival in Adrenocortical Carcinoma

Impulse Buying Content Analysis and Online Survey

Creator:: Moser, Carol, Schoenebeck, Sarita Y., and Resnick, Paul
Description:: This work investigates what features e-commerce sites use to encourage impulse buying and what tools consumers desire to curb their online spending. We present supplementary material for two studies: (1) a systematic content analysis of 200 top e-commerce websites in the U.S. and (2) a survey of online impulse buyers (N=151). Files include: (1) Study 1 Code book for content analysis of websites (2) Study 1 CSV data file resulting from the content analysis (3) Study 1 PDFs (N=200) of e-commerce websites analyzed (4) Study 2 Online survey questionnaire (5) Study 2 Survey code book for free response questions
Citation to related publication:
Discipline:: Social Sciences
Title:: Impulse Buying Content Analysis and Online Survey

Decrease in radiative forcing by organic aerosol nucleation, climate, and land use change

Creator:: Zhu, Jialei, Penner, Joyce E., Yu, Fangqun, Sillman, Sanford, Andreae, Meinrat O., and Coe, Hugh
Description:: The dataset contains the Fortran programs applied in the latest CESM/IMPACT model as well as the data created from this model, which are used in the referenced paper.
Keyword:: Organic nucleation and Radiative forcing
Citation to related publication:: Zhu, J. et al. Decrease in radiative forcing by organic aerosol nucleation, climate, and land use change. Nature Communications 10, 423 (24 January 2019).
Discipline:: Science
Title:: Decrease in radiative forcing by organic aerosol nucleation, climate, and land use change

Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools [DATA SET]

Creator:: Thomaz, Andréa T. (UMICH), Carvalho, Tiago P. (UFRGS), Malabarba, Luiz R. (UFRGS), and Knowles, L. Lacey (UMICH)
Description:: Estimated phylogenetic relationships based on more than 18,000 loci in 93 individuals (full data) or 21 individuals (subset data) representing 19 described species and two putative undescribed species. Nine files are part of this dataset, including all input files to infer the phylogenetic reconstructions and the outputs obtained, in addition to a pruned tree used to infer the ancestral state reconstructions.
Keyword:: dusky millions poeciliids, sexual selection, South America, and ddRADseq
Citation to related publication:: Andréa T. Thomaz, Tiago P. Carvalho, Luiz R. Malabarba, L. Lacey Knowles, Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools, Molecular Phylogenetics and Evolution, 2018, ISSN 1055-7903, https://doi.org/10.1016/j.ympev.2018.12.008
Discipline:: Science
Title:: Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools [DATA SET]

Student Writing Eportfolio: "Jonah's" Gateway

Creator:: Mitchell, Michael
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890, and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Jonah's" Gateway

Student Writing Eportfolio: "Jenna's" Gateway

Creator:: Danko, Melissa
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway, sitesucker , website, and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Jenna's" Gateway

Student Writing Eportfolio: "Jenna's" Capstone

Creator:: Danko, Melissa
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , capstone , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Jenna's" Capstone

Student Writing Eportfolio: "Amanda's" Gateway

Creator:: Schuler, Kaitlin
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Amanda's" Gateway

Student Writing Eportfolio: "Julia's" Capstone

Creator:: Cockrum, Kayla
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , capstone , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Julia's" Capstone

Student Writing Eportfolio: "Samantha's" Gateway

Creator:: Brown, Kathryn
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker , website, and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Samantha's" Gateway

Student's Writing Eportfolio: "Samantha's" Capstone

Creator:: Brown, Kathryn
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , capstone , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student's Writing Eportfolio: "Samantha's" Capstone

Student Writing Eportfolio: "Adrienne's" Gateway

Creator:: Adams, Julia
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Adrienne's" Gateway

Student Writing Eportfolio: "Dan's" Gateway

Creator:: Garno, Gregory
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker, website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Dan's" Gateway

Student Writing Eportfolio: "Dana's" Gateway

Creator:: Lisner, Emily
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , gateway , sitesucker , website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing Eportfolio: "Dana's" Gateway

Student Writing E-portfolio: "Shannon's" Capstone

Creator:: Avesian, Erica
Description:: This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
Keyword:: eportfolio , capstone, sitesucker, website , and file directory
Citation to related publication:: GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
Discipline:: Humanities
Title:: Student Writing E-portfolio: "Shannon's" Capstone

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