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- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:67204 (Blarina brevicauda talpoides) - WholeBody. Raw Dataset includes 3141 TIF images (each 1309 x 1277 x 1 voxel at 0.02211478 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:67204 (Blarina brevicauda talpoides) - WholeBody. Reconstructed Dataset includes 1770 TIF images (each 1309 x 1277 x 1 voxel at 0.022115 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda talpoides, 1987260329, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987260329
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:154696 (Blarina brevicauda brevicauda) - WholeBody. Raw Dataset includes 3141 TIF images (each 1474 x 1000 x 1 voxel at 0.03552838 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:154696 (Blarina brevicauda brevicauda) - WholeBody. Reconstructed Dataset includes 1731 TIF images (each 1474 x 1000 x 1 voxel at 0.035528 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda brevicauda, 1987334573, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987334573
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:67204 (Blarina brevicauda talpoides) - WholeBody. Raw Dataset includes 3141 TIF images (each 1052 x 1029 x 1 voxel at 0.03860608 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:67204 (Blarina brevicauda talpoides) - WholeBody. Reconstructed Dataset includes 1928 TIF images (each 1052 x 1029 x 1 voxel at 0.038606 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda talpoides, 1987260329, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987260329
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1999 x 1757 x 1 voxel at 0.121616 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Reconstructed Dataset includes 1999 TIF images (each 1999 x 1757 x 1 voxel at 0.121616 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Cervidae, Cervus elaphus canadensis, 1987337731, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987337731
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1755 x 1704 x 1 voxel at 0.121616 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Reconstructed Dataset includes 1999 TIF images (each 1755 x 1704 x 1 voxel at 0.121616 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Cervidae, Cervus elaphus canadensis, 1987337731, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987337731
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1635 x 1407 x 1 voxel at 0.1216151 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:59189 (Cervus elaphus canadensis) - WholeBody. Reconstructed Dataset includes 1980 TIF images (each 1635 x 1407 x 1 voxel at 0.121615 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Cervidae, Cervus elaphus canadensis, 1987337731, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987337731
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:59797 (Cervus elaphus canadensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1716 x 1460 x 1 voxel at 0.1216177 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:59797 (Cervus elaphus canadensis) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 1716 x 1460 x 1 voxel at 0.121618 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Cervidae, Cervus elaphus canadensis, 1987268911, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987268911
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:59797 (Cervus elaphus canadensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1502 x 1633 x 1 voxel at 0.1216177 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:59797 (Cervus elaphus canadensis) - WholeBody. Reconstructed Dataset includes 1964 TIF images (each 1502 x 1633 x 1 voxel at 0.121618 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Cervidae, Cervus elaphus canadensis, 1987268911, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987268911
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:112322 (Bassaricyon gabbii RICHARDSONI) - WholeBody. Raw Dataset includes 1601 TIF images (each 1153 x 985 x 1 voxel at 0.04825583 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:112322 (Bassaricyon gabbii RICHARDSONI) - WholeBody. Reconstructed Dataset includes 1968 TIF images (each 1153 x 985 x 1 voxel at 0.048256 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Procyonidae, Bassaricyon gabbii RICHARDSONI, 1987330701, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987330701
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:126847 (Eira barbara) - WholeBody. Raw Dataset includes 1601 TIF images (each 1067 x 965 x 1 voxel at 0.06800936 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:126847 (Eira barbara) - WholeBody. Reconstructed Dataset includes 1925 TIF images (each 1067 x 965 x 1 voxel at 0.068009 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Mustelidae, Eira barbara, 1987324263, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987324263
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166222 (Caracal caracal) - WholeBody. Raw Dataset includes 1601 TIF images (each 1147 x 1477 x 1 voxel at 0.0673404 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166222 (Caracal caracal) - WholeBody. Reconstructed Dataset includes 1935 TIF images (each 1147 x 1477 x 1 voxel at 0.067340 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Felidae, Caracal caracal, 1987301574, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987301574
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:177693 (Catopuma temminckii) - WholeBody. Raw Dataset includes 1601 TIF images (each 1345 x 1072 x 1 voxel at 0.07314861 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:177693 (Catopuma temminckii) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 1345 x 1072 x 1 voxel at 0.073149 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Felidae, Catopuma temminckii, 1987247649, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987247649
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:63901 (Bassariscus astutus arizonensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1044 x 1229 x 1 voxel at 0.04182079 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:63901 (Bassariscus astutus arizonensis) - WholeBody. Reconstructed Dataset includes 1973 TIF images (each 1044 x 1229 x 1 voxel at 0.041821 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Procyonidae, Bassariscus astutus arizonensis, 1987315974, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987315974
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:98652 (Civettictis civetta) - WholeBody. Raw Dataset includes 1601 TIF images (each 948 x 848 x 1 voxel at 0.0837228 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:98652 (Civettictis civetta) - WholeBody. Reconstructed Dataset includes 1954 TIF images (each 948 x 848 x 1 voxel at 0.083723 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Viverridae, Civettictis civetta, 1987305592, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987305592
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:98654 (Atilax paludinosus) - WholeBody. Raw Dataset includes 1601 TIF images (each 967 x 1077 x 1 voxel at 0.06566751 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:98654 (Atilax paludinosus) - WholeBody. Reconstructed Dataset includes 1977 TIF images (each 967 x 1077 x 1 voxel at 0.065668 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Herpestidae, Atilax paludinosus, 1987250171, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987250171
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:158896 (Pteropus pumilus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1210 x 892 x 1 voxel at 0.07973828 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:158896 (Pteropus pumilus) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 1210 x 892 x 1 voxel at 0.079738 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Pteropodidae, Pteropus pumilus, 1987275421, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987275421
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:171797 (Peromyscus MANICULATUS gracilis) - WholeBody. Raw Dataset includes 3001 TIF images (each 625 x 772 x 1 voxel at 0.04907391 mm resolution, derived from 3001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:171797 (Peromyscus MANICULATUS gracilis) - WholeBody. Reconstructed Dataset includes 1975 TIF images (each 625 x 772 x 1 voxel at 0.049074 mm resolution, derived from 3001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Peromyscus MANICULATUS gracilis, 1987346655, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987346655
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:158895 (Pteropus pumilus) - WholeBody. Raw Dataset includes 1601 TIF images (each 924 x 1093 x 1 voxel at 0.0783933 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:158895 (Pteropus pumilus) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 924 x 1093 x 1 voxel at 0.078393 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Pteropodidae, Pteropus pumilus, 1987271498, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987271498
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:174732 (Microgale talazaci) - WholeBody. Raw Dataset includes 3141 TIF images (each 634 x 469 x 1 voxel at 0.06971601 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:174732 (Microgale talazaci) - WholeBody. Reconstructed Dataset includes 1957 TIF images (each 634 x 469 x 1 voxel at 0.069716 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Afrosoricida, Tenrecidae, Microgale talazaci, 1987232883, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987232883
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:161555 (Rousettus amplexicaudatus AMPLEXICAUDATUS) - Skull. Raw Dataset includes 2401 TIF images (each 1512 x 1939 x 1 voxel at 0.03505111 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Pteropodidae, Rousettus amplexicaudatus AMPLEXICAUDATUS, 1987291962, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987291962
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:163615 (Megaderma spasma SPASMA) - WholeBody. Raw Dataset includes 3141 TIF images (each 799 x 1057 x 1 voxel at 0.0414075 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:163615 (Megaderma spasma SPASMA) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 799 x 1057 x 1 voxel at 0.041408 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Megadermatidae, Megaderma spasma SPASMA, 1987289689, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987289689
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:161555 (Rousettus amplexicaudatus AMPLEXICAUDATUS) - WholeBody. Raw Dataset includes 3141 TIF images (each 801 x 1238 x 1 voxel at 0.06713326 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:161555 (Rousettus amplexicaudatus AMPLEXICAUDATUS) - WholeBody. Reconstructed Dataset includes 1951 TIF images (each 801 x 1238 x 1 voxel at 0.067133 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Pteropodidae, Rousettus amplexicaudatus AMPLEXICAUDATUS, 1987291962, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987291962
- Discipline:
- Science
-
- Creator:
- Kort, Eric A, Plant, Genevieve, and Dacic, Natasha
- Description:
- Ensemble of optimized posterior N2O (nitrous oxide) fluxes derived from a Bayesian Inversion framework and in-situ aircraft observations of Iowa in 2021 (May 26, 2021 – June 4, 2021) and 2022 (May 18, 2022 – May 31, 2022) from “Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa,” citation below. For each flight day there (12 in total), there are three separate files that represent fluxes derived for three distinct spatial resolutions. Further details about the ensemble members are provided in Dacic, Plant, & Kort (2024). Citation: Dacic N, Plant G, Kort EA, “Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa,” in revisions for JGR: Atmospheres.
- Keyword:
- nitrous oxide, N2O, agriculture, soil, Iowa
- Citation to related publication:
- Dacic N, Plant G, Kort EA, “Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa,” in revisions for JGR: Atmospheres
- Discipline:
- Science
-
- Creator:
- Kort, Eric A., Plant, Genevieve, and Dacic, Natasha
- Description:
- As part of the Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) project, in 2021 the aircraft platform sampled the agriculture regions of Nebraska and Iowa. Vertical profiles were conducted on each flight to capture the vertical structure and mixing depths of the atmosphere. The data files contains the merged data for each individual file day.
- Keyword:
- Greenhouse Gas, Agriculture , and Nitrous Oxide
- Citation to related publication:
- Gvakharia A, Kort EA, Smith M, Conley S, Testing and evaluation of a new airborne system for continuous N2O, CO2, CO, and H2O measurements: the Frequent Calibration High-performance Airborne Observation System (FCHAOS), Atmos. Meas. Tech. 11, 6059-6074, https://doi.org/10.5194/amt-11-6059-2018, 2018, Conley S, Faloona I.C, Lenschow D.H, Karion A, Sweeney S, (2014) A low-cost system for measuring horizontal winds from single-engine aircraft, Journal of Atmospheric and Oceanic Technology, 31(6), 1312-1320, https://doi.org/10.1175/JTECH-D-13-00143.1, Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa" by Natasha Dacic, Genevieve Plant, and Eric A Kort. Journal of Geophysical Research: Atmospheres. Submitted., and 2022 dataset: Kort, E. A., Plant, G., Dacic, N. (2024). Aircraft Data (2022) for Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/tmfd-nw87
- Discipline:
- Science
-
- Creator:
- Kort, Eric A, Plant, Genevieve, and Dacic, Natasha
- Description:
- As part of the Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) project, in 2022 an aircraft platform sampled atmospheric concentrations of nitrous oxide (N2O) in the agriculture regions of Iowa. Vertical profiles were conducted on each flight to capture the vertical structure and mixing depths of the atmosphere. The data files contain the merged data for each individual flight day.
- Keyword:
- Greenhouse Gases, Nitrous Oxide, and Agricultural soils
- Citation to related publication:
- Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa" by Natasha Dacic, Genevieve Plant, and Eric A Kort. Journal of Geophysical Research: Atmospheres. Submitted. and 2021 dataset: Kort, E. A., Plant, G., Dacic, N. (2022). Aircraft Data (2021) for Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/0jvh-0c91
- Discipline:
- Science
-
- Creator:
- Hill, Shannon C.
- Description:
- This dataset represents a theta aurora case study in which we simulated a specific theta aurora event observed by IMAGE spacecraft on 15 May 2005. The IMAGE observations and the Wind solar wind observations can be found via cdaweb. We simulate eight hours of the event with SWMF Geospace on the Great Lakes HPC cluster (15 May 2005 0020 UT - 0820 UT). We use the log output files to plot the simulation SYM-H and AL indices using a python script. We use the IDL output files to plot the IE simulation results - we focus on timesteps 0531 UT, 0539 UT, and 0602 UT - using the same python script. The BATSRUS portion (MHD) of the simulation framework produces 3D output files (extension .dat) in ascii. We use Tecplot 360 2021 R2 preplot script to convert the 3D output files into binary (extension .plt) for analysis. We use Tecplot 360 2021 R2 software to view the 3D output files in the Tecplot 360 2021 R2 GUI. We focus the analysis of the 3D output files on timesteps 0531 UT and 0602 UT. We use a python script to extract information from the 3D output files and plot in 2D with the IE data.
- Keyword:
- magnetosphere, aurora, and MHD simulation
- Citation to related publication:
- https://doi.org/10.1029/2023GL108002
- Discipline:
- Science
-
- Creator:
- Brang, David
- Description:
- Key Points: - We provide a dataset obtained from iEEG and fMRI who completed an auditory-visual speech perception task. The data is fully preprocessed and ready for analysis. Research Overview: Here, we investigated the hypothesis that the auditory system encodes visual speech information through spatially distributed representations using fMRI data from healthy adults and intracranial recordings from electrodes implanted in patients with epilepsy. Across both datasets, linear classifiers successfully decoded the identity of silently lipread words using the spatial pattern of auditory cortex responses. Examining the time-course of classification using intracranial recordings, lipread words were classified at earlier time-points relative to heard words, suggesting a predictive mechanism for facilitating speech. These results support a model in which the auditory system combines the joint neural distributions evoked by heard and lipread words to generate a more precise estimate of what was said.
- Citation to related publication:
- Article in review
- Discipline:
- Science
-
- Creator:
- Kharbush, Jenan, Rahman, Raisha, and Pearson, Ann
- Description:
- Amino acids are the primary nitrogen-containing compounds in cells, participating in various metabolic processes such as protein synthesis and degradation into other nitrogenous compounds. Compound-specific nitrogen isotope analysis of amino acids in environmental samples can provide insight into nitrogen sources, cycling, and tropic modifications in ecosystems. However, we lack comprehensive understanding of N utilization patterns in microorganisms, which are the site of nitrogen assimilation in biological systems, due to the varied and complex mechanisms by which microbes can acquire and metabolize nitrogen-containing compounds. δ15N measurements for free intracellular amino acids and protein-bound amino acids for environmentally-relevant microbial groups may aid in untangling the biochemical processes involved in amino acid metabolism performed by these microbial communities. Here, we report intracellular amino acid δ15N values for R. palustris, a metabolically versatile anoxygenic phototrophic bacterium.
- Keyword:
- amino acids, nitrogen stable isotope analysis, compound-specific isotope analysis, and batch culture
- Discipline:
- Science
-
- Creator:
- Crowell, Hayley L . , Curlis, John David, Weller, Hannah I., and Davis Rabosky, Alison R.
- Description:
- Ultraviolet (UV) wavelengths invisible to humans are primarily studied in the context of reproduction and social signaling. This narrow focus can arise from bias in taxa studied, which are often brightly colored in human-visible wavelengths. Our research describes undocumented UV color patterns across 110 diverse species of Western Hemisphere snakes and tests the hypothesized roles of reproduction versus predator avoidance in the evolution of UV coloration. Phylogenetically-informed tests of life stage, sex, and habitat showed unexpected support for the predator defense hypothesis, with pronounced differences in snake conspicuousness explained by UV coloration. UV reflectance was not predictable from any aspect of visible color pattern, suggesting high potential for transformative discoveries in other “cryptically-colored” lineages across the tree of life.
- Keyword:
- color, ecology, evolution, predators, snakes, and ultraviolet
- Citation to related publication:
- Crowell, H. L., Curlis, J. D., Weller, H. I., & Davis Rabosky, A. R. (2024). Ecological drivers of ultraviolet colour evolution in snakes. Nature Communications, 15(1), 5213. http://doi.org/10.1038/s41467-024-49506-4
- Discipline:
- Science
-
Jordan pterosaur CT scans & 3D models
User Collection- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- This collection includes computed tomography (CT) scans and 3D models of humeral remains from two Late Cretaceous pterosaurs from Jordan: Inabtanin alarabia (YUPC-INAB-6-001–010) and Arambourgiania philadelphiae (YUPC-RUSEIFA-1). Both specimens are accessioned to Yarmouk University, in the Hashemite Kingdom of Jordan. For inquiries about access, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of selected elements of Inabtanin and Arambourgiania are available at the University of Michigan Museum of Paleontology. and The Jordanian pterosaurs were described in: Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Discipline:
- Science
5Works -
- Creator:
- Nagesan, Ramon S, Crowell, Hayley L, Kolmann, Matthew, and Davis Rabosky, Alison R
- Description:
- The datasets associated with this deposit are micro-CT data. These data were generated to be better understand how diffusion iodine contrast enhanced (diceCT) CT scanning can differ amongst major groups of vertebrates. This study stained fish, mammals, reptiles, and amphibians with either H20-Lugol's iodine or Ethylic-Lugol's iodine and measured the differences in the resulting stained soft tissue contrast levels and iodine uptake.
- Keyword:
- Zoology
- Discipline:
- Science
-
- Creator:
- Hutson, Abby , Fujisaki-Manome, Ayumi, and Glassman, Ryan
- Description:
- The data herein resulted from a study documenting the characteristics of extratropical cyclones that pass through the Great Lakes Region (GLR) and how the cyclones are trending with time. All scripts used to create these data can be found in the Github repository https://github.com/abkenyon/GLStormTrends_2024. storm_track_slp_xxxx.npz - Structured numpy files containing all storm tracks identified over one cold season, regardless of whether the storm encountered the GLR, with the file name indicating the year on which the season ended. storm_composite_xxxx-xxxx.nc - NetCDF files containing one seasonal cyclone composite with different atmospheric variables. A composite is storm-centered, and covers a 20 degree square area.
- Keyword:
- Extratropical Cyclones, Climate Trends, Great Lakes Climate
- Citation to related publication:
- Hutson A, Fujisaki-Manome A, Glassman R.: Historical Trends in Cold-Season Mid-Latitude Cyclones. Geophysical Research Letters. In press..
- Discipline:
- Science
-
- Creator:
- Sosa Alfaro, Victor, Palomino, Hannah, Liu, Sophia, Lemuh Njimoh, Cybele, and Lehnert, Nicolai
- Description:
- Pharmaceutical synthesis has been a driving force behind advancements in the field of biocatalysis. In this paper, we report the further optimization of the heme protein YfeX for regio- and stereoselective carbene transfer reactions using mutagenesis to explore the role of important amino acids in the active site for catalysis. In this way, we identified YfeX variants that are efficient and selective carbene transferases towards primary and secondary amines, olefins, and indoles. Molecular Dynamic simulations reveal that mutations within the secondary coordination sphere induce distinct alterations in the conformation and electrostatic properties within the active site. These changes, in turn, affect substrate positioning both within the active site and at its entrance, which explains the distinct and sometimes surprising variations in selectivity observed experimentally between select YfeX variants. Our results show that the I230A single variant identified here is one of the most active N-H insertion catalysts known, producing >90% yields in only 1 hour (typical reaction times in the literature are 8 – 24 hours). On the other hand, the R232A variant catalyzes the C-H insertion of unprotected indole in 21% yield. The capacity to selectively act on unprotected indole offers a cost-effective, environmentally-friendly approach for late-stage functionalization of indoles and similar precursors in pharmaceuticals. In addition, YfeX is an efficient and fast biocatalyst that shows no structural degradation or heme loss during turnover, underscoring YfeX’s robustness as a viable biocatalyst for both industrial and academic applications.
- Keyword:
- Biocatalysis, Heme proteins, Carbene transfer reactions, Peroxidases , N-H insertion, Cyclopropanation, and Molecular dynamics
- Citation to related publication:
- Sosa Alfaro, Victor; Palomino, Hannah; Liu, Sophia; Lemuh Njimoh, Cybele; Lehnert, Nicolai, "Combined Experimental and Molecular Dynamics Approach Towards a Rational Design of the YfeX Biocatalyst for Enhanced Carbene Transferase Reactivity", Catalysis Science & Technology 2024, 14, DOI: 10.1039/D3CY01489D
- Discipline:
- Science
-
- Creator:
- Whittaker, Collin B. and Jorns, Benjamin A.
- Description:
- This work characterized variability in the emitter geometry of a porous electrospray array thruster. It consists of raw topographic maps taken from the thruster, segmented versions of those maps that divide the measurement domain into individual sites within the array, and the geometric parameters describing each of those sites inferred by regressing a geometric model of an emitter against the data. It also includes copies of the computer code used to perform this analysis and plot the results, written in a combination of Python and MATLAB.
- Discipline:
- Engineering
-
- Creator:
- Shin, Satbyeol and Gronewold, Andrew D.
- Description:
- - Temporal coverage: 1/1/1941 to 12/31/2020 - Spatial coverage: Entire Great Lakes basin - Output format: The original modeling outputs are provided at a 1 km/daily resolution in NetCDF format. There are two kinds of modeling outputs, which are land surface modeling outputs (LDASOUT) and hydrological modeling outputs (CHRTOUT). The author recommend using the netCDF Operators (NCO) program for data processing. For visualization and plotting, the author recommend using software like MATLAB, Python or R.
- Keyword:
- Hydrologic modeling, Overland precipitation, Air temperature, Evapotranspiration, Snow Water Equivalent, Runoff, Surface Soil moisture, St. Lawrence river, Great Lakes basin, Reanalysis data, WRF-Hydro, and ERA-5
- Discipline:
- Science
-
- Creator:
- El Shair, Zaid A., Abu-raddaha, Abdalmalek , Cofield, Aaron, Alawneh, Hisham, Aladem, Mohamed, Hamzeh, Yazan, and Rawashdeh, Samir A.
- Description:
- The SID dataset was curated to support advanced research in autonomous driving systems, particularly focusing on perception under adverse weather and lighting conditions. This dataset encompasses over 178k high-resolution stereo image pairs organized into 27 sequences, reflecting a rich variety of conditions such as snow, rain, fog, and low light. It covers dynamic changes in driving scenarios and environmental backgrounds, including university campuses, residential streets, and urban settings. The dataset is designed to challenge perception algorithms with scenarios such as partially obscured camera lenses and varying visibility, promoting the development of robust computer vision models. No specialized software or scripts are necessary for accessing the image data, as the files are provided in standard PNG format. However, researchers and developers may require their image processing and computer vision toolkits to utilize the dataset effectively in their work.
- Keyword:
- Autonomous Driving, Adverse Weather, Stereo Vision, Image Dataset, Computer Vision, and Perception Algorithms
- Citation to related publication:
- El-Shair, Z.A., Abu-raddaha, A., Cofield, A., Alawneh, H., Aladem, M., Hamzeh, Y., and Rawashdeh, S.A., 2024. SID: Stereo Image Dataset for Autonomous Driving in Adverse Conditions. In 2024 IEEE National Aerospace and Electronics Conference (NAECON). IEEE. In press.
- Discipline:
- Engineering
-
- Creator:
- Fahim, Abigail T
- Description:
- The purpose of this research is to compare levels of unprenylated Rab proteins in CHM-/- iPSC-RPE cells with and without compactin. Compactin is a statin that inhibits prenyl synthesis and thereby reduces prenylation overall and has an unbiased inhibitory effect on all protein prenylation. So we expect that for Rabs that are already poorly prenylated at baseline in choroideremia RPE cells, compactin will have minimal effect. However, for Rabs that are efficiently prenylated at baseline, compactin should have a much greater effect. And then we used tandem mass tag spectrometry to compare the ratio of each unprenylated Rab in compactin-treated choroideremia cells vs untreated choroideremia cells. In the spreadsheet, "F8" refers to the CHM-/- iPSC-RPE cells and "WT" refers to the isogenic control iPSC-RPE cells. In the "Proteins only" tab, column M shows the ratio of each protein in "DMSO" (untreated) choroideremia cells compared to Compactin-treated choroideremia cells. Compactin-treated control cells are also included in other columns. Untreated control cells could not be used because prenylation is so efficient in these cells, there is almost no material available after doing the in vitro prenylation assay (i.e. almost no unprenylated proteins to biotinylate). The column descriptions can be found in the sheet titled "Explanations." In addition, AAs= number of amino acids in the protein, MW= molecular weight of the protein, and pI= isoelectric point. The software is set to report abundance values only when certain criteria are met (S/N of 6, unique peptide etc). A value is NOT reported when the data for a protein fall below these criteria and the cell is instead left blank.
- Keyword:
- choroideremia, retinal pigment epithelium, prenylation, and Rab protein
- Citation to related publication:
- Raeker, M.O., Perera, N.D., Karoukis, A.J., Chen, L., Feathers, K.L., Ali, R.R., Thompson, D.A., Fahim, A.T. Reduced retinal pigment epithelial autophagy due to loss of Rab12 prenylation in a human iPSC-RPE model of choroideremia. Cells, manuscript accepted, in press.
- Discipline:
- Health Sciences and Science
-
- Creator:
- Marks, Thomas A and Gorodetsky, Alex A
- Description:
- WarpX simulations of the 2D axial-azimuthal Hall thruster benchmark, as described in IEPC paper 409 (2024): https://www.thomasmarks.space/files/Marks_T_IEPC_2024_WarpX.pdf Contains one subdirectory: baseline_20us: 20 us of data, saved every 5000 iterations (32 GB) The data is in AMReX plotfile format.
- Keyword:
- hall thruster, plasma, pic, particle in cell, particle, cell, kinetic, electric propulsion, and thruster
- Citation to related publication:
- @inproceedings{marksWarpX2024, title = {Hall thruster simulations in {{Warp-X}}}, booktitle = {38th {{International Electric Propulsion Conference}}}, author = {Marks, Thomas A. and Gorodetsky, Alex A.}, year = {2024}, month = jun, address = {Toulouse, France} }
- Discipline:
- Engineering
-
- Creator:
- El Shair, Zaid A. and Rawashdeh, Samir A.
- Description:
- The MEVDT dataset was created to fill a critical gap in event-based computer vision research by supplying a high-quality, real-world labeled dataset. Intended to facilitate the development of advanced algorithms for object detection and tracking applications, MEVDT includes multi-modal traffic scene data with synchronized grayscale images and high-temporal-resolution event streams. Additionally, it provides annotations for object detection and tracking with class labels, pixel-precise bounding box coordinates, and unique object identifiers. The dataset is organized into directories containing sequences of images and event streams, comprehensive ground truth labels, fixed-duration event samples, and data indexing sets for training and testing. and To access and utilize the dataset, researchers need specific software or scripts compatible with the data formats included, such as PNG for grayscale images, CSV for event stream data, AEDAT for the encoded fixed-duration event samples, and TXT for annotations. Recommended tools include standard image processing libraries for PNG files and CSV or text parsers for event data. A specialized Python script for reading AEDAT files is available at: https://github.com/Zelshair/cstr-event-vision/blob/main/scripts/data_processing/read_aedat.py, which streamlines access to the encoded event sample data.
- Keyword:
- Computer Vision, Event-Based Vision, Object Detection, Object Tracking, and Multi-Modal Vision Dataset
- Citation to related publication:
- El Shair, Z. and Rawashdeh, S., 2024. MEVDT: Multi-Modal Event-Based Vehicle Detection and Tracking Dataset. Data In Brief (under review)., El Shair, Z. and Rawashdeh, S.A., 2022. High-temporal-resolution object detection and tracking using images and events. Journal of Imaging, 8(8), p.210., El Shair, Z. and Rawashdeh, S., 2023. High-temporal-resolution event-based vehicle detection and tracking. Optical Engineering, 62(3), pp.031209-031209., and El Shair, Z.A., 2024. Advancing Neuromorphic Event-Based Vision Methods for Robotic Perception Tasks (Doctoral dissertation, University of Michigan-Dearborn).
- Discipline:
- Engineering
-
- Creator:
- Yu, Chi-Lin
- Description:
- The study aims to describe how children worldwide progress through a sequence of theory of mind understandings in their development of insights into persons and minds. The focus is on the studies using Wellman and Liu's (2004) Theory of Mind Scale. A comprehensive search was run in PsycINFO, PsycArticles, Child Development & Adolescent Studies, Education Abstracts, Family & Society Studies Worldwide, and Social Sciences Abstracts. The dataset includes 91 studies using Wellman and Liu's (2004) Theory of Mind Scale.
- Keyword:
- meta-analysis, theory of mind, social cognitive development, culture, and conceptual sequences
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey , Ouattara, Aminata , and Hantgan, Abbie
- Description:
- Our project, mainly on Dogon languages of Mali, has branched out to Burkina Faso with emphasis on documentation of the most endangered languages. Tiefo-N was studied on an emergency basis since it was down to two aging competent speakers. For additional comments and links to a reference grammar, see the readme file.
- Keyword:
- Gur languages, Tiefo, Tiefo-N language, and Lexicon
- Citation to related publication:
- Jeffrey Heath, Aminata Ouattara & Abbie Hantgan. Short grammar of Tiefo-N of Nyafogo (Gur, Burkina Faso). Language Description Heritage Library (MPI). http://ldh.clld.org/2017/01/01/escidoc2378140/ and A copy of this publication is also available in Deep Blue: http://dx.doi.org/10.17617/2.2378140
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Jalkunan is an endangered language of the Mande family, spoken in the village cluster of Blédougou in southwestern Burkina Faso. The lexical work complements a published grammar with texts. See the readme for further information.
- Keyword:
- Jalkunan, Burkina Faso, Mande languages, and Lexicon
- Citation to related publication:
- Heath, Jeffrey. A grammar of Jalkunan (Mande, Burkina Faso). 2017. http://hdl.handle.net/2027.42/139025
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Jalkunan is a small-population Mande language spoken in Blédougou village cluster in the Banfora plateau in SW Burkina Faso.A grammar was published electronically at Language Description Heritage Library in 2017. http://ldh.clld.org/2017/01/01/escidoc2346932/ This is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139025 http://dogonlanguages.org/other#mande Seven texts were recorded digitally in 2016 and are archived here. Three of them (texts 1, 2, and 4) were transcribed and translated at the end of the published grammar. The remaining tapes are not transcribed as of May 2018. I give permission to other linguists to transcribe, translate, and/or analyse the remaining texts.
- Keyword:
- Jalkunan, Mande, Audio, and Recording
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Documentary-style videos about villages and social relations in Dogon country. Documentaries are given in two or three video formats each.
- Keyword:
- Mali, Dogon, and villages
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- This is the flora-fauna lexical material obtained in the course of more general lexical and grammatical fieldwork on languages of central-eastern Mali (Dogon, Songhay, Bangime, Bozo). The spreadsheets in this work, duplicated in xlsx and csv formants, present our flora-fauna lexicons as of early 2019 for many languages of central-eastern Mali, and certain languages of southwestern Burkina Faso. The Malian data is in two spreadsheets (flora, fauna), while the Burkina data is in separate spreadsheets for flora, birds, fish, insects, lizards and snakes, and mammals. Please begin with the “readme” document.
- Keyword:
- flora, fauna, lexicon, Mali, and Burkina Faso
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. https://dogonlanguages.org and Christfried Naumann & Tom Güldemann & Steven Moran & Guillaume Segerer & Robert Forkel (eds.) 2015. Tsammalex: A lexical database on plants and animals. Leipzig: Max Planck Institute for Evolutionary Anthropology. https://tsammalex.clld.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- The spreadsheets (in csv and xlsx formats) have columns for botanical family, genus-species binomials, synonymy (outdated binomials) on the left, folllowed by columns with native terms in several Dogon languages and in Bangime. Dogon languages included are Toro Tegu, Ben Tey, Bankan Tey, Nanga, Jamsay (main dialect), Perge Tegu (Jamsay of Pergé village), Gourou (aberrant variety of Jamsay), Togo Kan, Yorno So and Ibi So (in Toro So dialect complex), Donno So, Tomo Kan (of Segué and of Diangassagou), Tomo Kan, Dogul Dom, Tebul Ure, Yanda Dom, Najamba, Tiranige, Mombo, Ampari, Bunoge, and Penange. JH in column headings indicates that the material is from Dr. Heath's fieldwork. and For images of many of these plants, see the collection "Mali flora images" in Deep Blue Data ( https://doi.org/10.7302/aef4-fk26). For a practical guide to these plants, click on the link below in "related items in Deep Blue Documents".
- Keyword:
- Dogon, Bangime, and flora
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- translation/translation to appear.
- Discipline:
- Humanities
-
- Creator:
- Abdul Kareem, Tariq
- Description:
- The four specimens (GSI SR/YS/1, GSI SR/YS/2, GSI SR/YS/3, and GSI SR/YS/4) are identified as tail clubs that are attributed to the basal sauropod Kotasaurus yamanpalliensis. The specimens were collected by the Geological Survey of India Southern Region (GSI SR) and, in 2018, the specimens were studied as a collaboration between GSI SR and the University of Michigan Museum of Paleontology. The specimens are housed in the collections of the GSI SR (Hyderabad, India).
- Keyword:
- Paleontology, India, Sauropod, Dinosaurs, Tail club, and Jurassic
- Citation to related publication:
- Kareem, T. A., S. Chakraborty, and J. A. Wilson Mantilla. (in prep.) Sauropod tail clubs from the Kota Formation (Early to Middle Jurassic) of India and their implications for early sauropod evolution. Journal of Vertebrate Paleontology
- Discipline:
- Science
-
Invertebrate Paleontology
User Collection- Creator:
- paleo-museum@umich.edu
- Description:
- TBD
- Discipline:
- Science
0Works -
Vertebrate Paleontology
User Collection- Creator:
- paleo-museum@umich.edu
- Description:
- TBD
- Discipline:
- Science
2Sub-collections32Works