Date: 23 May, 2018

Dataset Title: Xantusia vigilis ddRADseq fastq files

Dataset Creators: Iris A Holmes, Ivan V Monagan Jr., Michael F Westphal, Alison R Davis Rabosky

Dataset Contact: Iris Holmes, iholmes@umich.edu

Funding: This study was supported by startup funds from the University of Michigan to ARDR and from the U.S. Bureau of Land Management to MFW and ARDR


Key Points:
- We generated RADseq data on night lizards from the genus Xantusia, particularly Xantusia vigilis from central California

- We prepared the genetic libraries based on the ddRAD protocol from Peterson et al.2012


Research Overview:
We generated these data from desert night lizards, Xantusia vigilis, from populations in central California. We performed phylogeographic analyses based on these data. 


Methodology:
We used a double digest Restriction-Associated Sequencing protocol to prepare reduced-representation DNA sequencing library. The DNA fragments were sequences on an Illumina HiSeq platform, and are uploaded here as unedited fastq files.


Instrument and/or Software specifications: NA


Files contained here:
The files are gzipped and in fastq formatting. Each sampled individual has one file with forward reads and one with reverse reads:

31BFF_R1.fq.gz fastq file with forward reads
31BFF_R2.fq.gz fastq file with reverse reads
6Af_R1.fq.gz fastq file with forward reads
6Af_R2.fq.gz fastq file with reverse reads
A1M_R1.fq.gz fastq file with forward reads
A1M_R2.fq.gz fastq file with reverse reads
AC1f_R1.fq.gz fastq file with forward reads
AC1f_R2.fq.gz fastq file with reverse reads
AC3_R1.fq.gz fastq file with forward reads
AC3_R2.fq.gz fastq file with reverse reads
AC8_R1.fq.gz fastq file with forward reads
AC8_R2.fq.gz fastq file with reverse reads
AQ1243_R1.fq.gz fastq file with forward reads
AQ1243_R2.fq.gz fastq file with reverse reads
AQ1251_R1.fq.gz fastq file with forward reads
AQ1251_R2.fq.gz fastq file with reverse reads
AQ1258_R1.fq.gz fastq file with forward reads
AQ1258_R2.fq.gz fastq file with reverse reads
AQ1259_R1.fq.gz fastq file with forward reads
AQ1259_R2.fq.gz fastq file with reverse reads
AQ1273_R1.fq.gz fastq file with forward reads
AQ1273_R2.fq.gz fastq file with reverse reads
AQ1276_R1.fq.gz fastq file with forward reads
AQ1276_R2.fq.gz fastq file with reverse reads
AQ1299_R1.fq.gz fastq file with forward reads
AQ1299_R2.fq.gz fastq file with reverse reads
AQ1301_R1.fq.gz fastq file with forward reads
AQ1301_R2.fq.gz fastq file with reverse reads
AQ1302_R1.fq.gz fastq file with forward reads
AQ1302_R2.fq.gz fastq file with reverse reads
AQ1309_R1.fq.gz fastq file with forward reads
AQ1309_R2.fq.gz fastq file with reverse reads
AQ1322_R1.fq.gz fastq file with forward reads
AQ1322_R2.fq.gz fastq file with reverse reads
AQ1323_R1.fq.gz fastq file with forward reads
AQ1323_R2.fq.gz fastq file with reverse reads
Apache11_R1.fq.gz fastq file with forward reads
Apache11_R2.fq.gz fastq file with reverse reads
BALX2F_R1.fq.gz fastq file with forward reads
BALX2F_R2.fq.gz fastq file with reverse reads
BALX3_R1.fq.gz fastq file with forward reads
BALX3_R2.fq.gz fastq file with reverse reads
BALX4M_R1.fq.gz fastq file with forward reads
BALX4M_R2.fq.gz fastq file with reverse reads
BALX4_R1.fq.gz fastq file with forward reads
BALX4_R2.fq.gz fastq file with reverse reads
BALX5F_R1.fq.gz fastq file with forward reads
BALX5F_R2.fq.gz fastq file with reverse reads
CALR2_R1.fq.gz fastq file with forward reads
CALR2_R2.fq.gz fastq file with reverse reads
CALR3_R1.fq.gz fastq file with forward reads
CALR3_R2.fq.gz fastq file with reverse reads
CALR7_R1.fq.gz fastq file with forward reads
CALR7_R2.fq.gz fastq file with reverse reads
CALX2_13_11_R1.fq.gz fastq file with forward reads
CALX2_13_11_R2.fq.gz fastq file with reverse reads
CALX2_13_12_R1.fq.gz fastq file with forward reads
CALX2_13_12_R2.fq.gz fastq file with reverse reads
CALX2_13_15_R1.fq.gz fastq file with forward reads
CALX2_13_15_R2.fq.gz fastq file with reverse reads
CIER1_12_R1.fq.gz fastq file with forward reads
CIER1_12_R2.fq.gz fastq file with reverse reads
CIER1_13_R1.fq.gz fastq file with forward reads
CIER1_13_R2.fq.gz fastq file with reverse reads
CIER1_3_R1.fq.gz fastq file with forward reads
CIER1_3_R2.fq.gz fastq file with reverse reads
CIER2_14_R1.fq.gz fastq file with forward reads
CIER2_14_R2.fq.gz fastq file with reverse reads
CIER2_5_R1.fq.gz fastq file with forward reads
CIER2_5_R2.fq.gz fastq file with reverse reads
CIER2_7_R1.fq.gz fastq file with forward reads
CIER2_7_R2.fq.gz fastq file with reverse reads
CIER3_11_R1.fq.gz fastq file with forward reads
CIER3_11_R2.fq.gz fastq file with reverse reads
CIER3_2_R1.fq.gz fastq file with forward reads
CIER3_2_R2.fq.gz fastq file with reverse reads
CIER3_9_R1.fq.gz fastq file with forward reads
CIER3_9_R2.fq.gz fastq file with reverse reads
CUYX1_R1.fq.gz fastq file with forward reads
CUYX1_R2.fq.gz fastq file with reverse reads
CUYX3_R1.fq.gz fastq file with forward reads
CUYX3_R2.fq.gz fastq file with reverse reads
CUYX5_R1.fq.gz fastq file with forward reads
CUYX5_R2.fq.gz fastq file with reverse reads
CYX2M_R1.fq.gz fastq file with forward reads
CYX2M_R2.fq.gz fastq file with reverse reads
CYX4F_R1.fq.gz fastq file with forward reads
CYX4F_R2.fq.gz fastq file with reverse reads
CYX6F_R1.fq.gz fastq file with forward reads
CYX6F_R2.fq.gz fastq file with reverse reads
CurryXN1_R1.fq.gz fastq file with forward reads
CurryXN1_R2.fq.gz fastq file with reverse reads
CurryXN2_R1.fq.gz fastq file with forward reads
CurryXN2_R2.fq.gz fastq file with reverse reads
CurryXN3_R1.fq.gz fastq file with forward reads
CurryXN3_R2.fq.gz fastq file with reverse reads
CurryXN4_R1.fq.gz fastq file with forward reads
CurryXN4_R2.fq.gz fastq file with reverse reads
DCX1_R1.fq.gz fastq file with forward reads
DCX1_R2.fq.gz fastq file with reverse reads
DCX2_R1.fq.gz fastq file with forward reads
DCX2_R2.fq.gz fastq file with reverse reads
GRIS2_12_R1.fq.gz fastq file with forward reads
GRIS2_12_R2.fq.gz fastq file with reverse reads
GRIS2_F_1_R1.fq.gz fastq file with forward reads
GRIS2_F_1_R2.fq.gz fastq file with reverse reads
GRIS2_U_4_R1.fq.gz fastq file with forward reads
GRIS2_U_4_R2.fq.gz fastq file with reverse reads
GRIS4_2_R1.fq.gz fastq file with forward reads
GRIS4_2_R2.fq.gz fastq file with reverse reads
Gris3_13_R1.fq.gz fastq file with forward reads
Gris3_13_R2.fq.gz fastq file with reverse reads
Gris3_14_R1.fq.gz fastq file with forward reads
Gris3_14_R2.fq.gz fastq file with reverse reads
Gris3_22_R1.fq.gz fastq file with forward reads
Gris3_22_R2.fq.gz fastq file with reverse reads
Gris4_15_R1.fq.gz fastq file with forward reads
Gris4_15_R2.fq.gz fastq file with reverse reads
Gris4_17_R1.fq.gz fastq file with forward reads
Gris4_17_R2.fq.gz fastq file with reverse reads
Gris4_5_R1.fq.gz fastq file with forward reads
Gris4_5_R2.fq.gz fastq file with reverse reads
MTD1_R1.fq.gz fastq file with forward reads
MTD1_R2.fq.gz fastq file with reverse reads
MTD2_R1.fq.gz fastq file with forward reads
MTD2_R2.fq.gz fastq file with reverse reads
MTD5_R1.fq.gz fastq file with forward reads
MTD5_R2.fq.gz fastq file with reverse reads
MVZ232669_R1.fq.gz fastq file with forward reads
MVZ232669_R2.fq.gz fastq file with reverse reads
MVZ232719_R1.fq.gz fastq file with forward reads
MVZ232719_R2.fq.gz fastq file with reverse reads
MVZ232720_R1.fq.gz fastq file with forward reads
MVZ232720_R2.fq.gz fastq file with reverse reads
N2_N4_2_R1.fq.gz fastq file with forward reads
N2_N4_2_R2.fq.gz fastq file with reverse reads
N4_10_9A_R1.fq.gz fastq file with forward reads
N4_10_9A_R2.fq.gz fastq file with reverse reads
N4_8_R1.fq.gz fastq file with forward reads
N4_8_R2.fq.gz fastq file with reverse reads
PINNXBG1_R1.fq.gz fastq file with forward reads
PINNXBG1_R2.fq.gz fastq file with reverse reads
PINNXFC1_R1.fq.gz fastq file with forward reads
PINNXFC1_R2.fq.gz fastq file with reverse reads
PINNXFC2_R1.fq.gz fastq file with forward reads
PINNXFC2_R2.fq.gz fastq file with reverse reads
PINNXFC3_R1.fq.gz fastq file with forward reads
PINNXFC3_R2.fq.gz fastq file with reverse reads
PINNXFC5_R1.fq.gz fastq file with forward reads
PINNXFC5_R2.fq.gz fastq file with reverse reads
PINNXFC6_R1.fq.gz fastq file with forward reads
PINNXFC6_R2.fq.gz fastq file with reverse reads
PINNXNW1_R1.fq.gz fastq file with forward reads
PINNXNW1_R2.fq.gz fastq file with reverse reads
PINNXOP1_R1.fq.gz fastq file with forward reads
PINNXOP1_R2.fq.gz fastq file with reverse reads
PINNXOP3_R1.fq.gz fastq file with forward reads
PINNXOP3_R2.fq.gz fastq file with reverse reads
PINNXOP4_R1.fq.gz fastq file with forward reads
PINNXOP4_R2.fq.gz fastq file with reverse reads
PINNXSC11_R1.fq.gz fastq file with forward reads
PINNXSC11_R2.fq.gz fastq file with reverse reads
PINNXSC13_R1.fq.gz fastq file with forward reads
PINNXSC13_R2.fq.gz fastq file with reverse reads
PINNXSC1_R1.fq.gz fastq file with forward reads
PINNXSC1_R2.fq.gz fastq file with reverse reads
PINNXSC2_R1.fq.gz fastq file with forward reads
PINNXSC2_R2.fq.gz fastq file with reverse reads
PINNXSC4_R1.fq.gz fastq file with forward reads
PINNXSC4_R2.fq.gz fastq file with reverse reads
PINNXSC9_R1.fq.gz fastq file with forward reads
PINNXSC9_R2.fq.gz fastq file with reverse reads
PINNXWS1_R1.fq.gz fastq file with forward reads
PINNXWS1_R2.fq.gz fastq file with reverse reads
PINNXWS2_R1.fq.gz fastq file with forward reads
PINNXWS2_R2.fq.gz fastq file with reverse reads
PINNXWS3_R1.fq.gz fastq file with forward reads
PINNXWS3_R2.fq.gz fastq file with reverse reads
QTX1M_R1.fq.gz fastq file with forward reads
QTX1M_R2.fq.gz fastq file with reverse reads
QTX4F_R1.fq.gz fastq file with forward reads
QTX4F_R2.fq.gz fastq file with reverse reads
QTX5F_R1.fq.gz fastq file with forward reads
QTX5F_R2.fq.gz fastq file with reverse reads
QUATX2.1_R1.fq.gz fastq file with forward reads
QUATX2.1_R2.fq.gz fastq file with reverse reads
QUATX2.2_R1.fq.gz fastq file with forward reads
QUATX2.2_R2.fq.gz fastq file with reverse reads
RLB5221_R1.fq.gz fastq file with forward reads
RLB5221_R2.fq.gz fastq file with reverse reads
RT2_R1.fq.gz fastq file with forward reads
RT2_R2.fq.gz fastq file with reverse reads
RTF8_R1.fq.gz fastq file with forward reads
RTF8_R2.fq.gz fastq file with reverse reads
SE4_14_R1.fq.gz fastq file with forward reads
SE4_14_R2.fq.gz fastq file with reverse reads
SE4_15_R1.fq.gz fastq file with forward reads
SE4_15_R2.fq.gz fastq file with reverse reads
SE4_6_R1.fq.gz fastq file with forward reads
SE4_6_R2.fq.gz fastq file with reverse reads
SE4_7_R1.fq.gz fastq file with forward reads
SE4_7_R2.fq.gz fastq file with reverse reads
SE4_9_R1.fq.gz fastq file with forward reads
SE4_9_R2.fq.gz fastq file with reverse reads
SW17_R1.fq.gz fastq file with forward reads
SW17_R2.fq.gz fastq file with reverse reads
SW18_R1.fq.gz fastq file with forward reads
SW18_R2.fq.gz fastq file with reverse reads
TC1002_R1.fq.gz fastq file with forward reads
TC1002_R2.fq.gz fastq file with reverse reads
TC1003_R1.fq.gz fastq file with forward reads
TC1003_R2.fq.gz fastq file with reverse reads
TC1006_R1.fq.gz fastq file with forward reads
TC1006_R2.fq.gz fastq file with reverse reads
TC2081_R1.fq.gz fastq file with forward reads
TC2081_R2.fq.gz fastq file with reverse reads
TUM1_15_R1.fq.gz fastq file with forward reads
TUM1_15_R2.fq.gz fastq file with reverse reads
TUM1_16_R1.fq.gz fastq file with forward reads
TUM1_16_R2.fq.gz fastq file with reverse reads
TUM1_21_R1.fq.gz fastq file with forward reads
TUM1_21_R2.fq.gz fastq file with reverse reads
WW1492_R1.fq.gz fastq file with forward reads
WW1492_R2.fq.gz fastq file with reverse reads
WW1494_R1.fq.gz fastq file with forward reads
WW1494_R2.fq.gz fastq file with reverse reads
WW1496_R1.fq.gz fastq file with forward reads
WW1496_R2.fq.gz fastq file with reverse reads
WW1497_R1.fq.gz fastq file with forward reads
WW1497_R2.fq.gz fastq file with reverse reads
WW1510_R1.fq.gz fastq file with forward reads
WW1510_R2.fq.gz fastq file with reverse reads
WW1538_R1.fq.gz fastq file with forward reads
WW1538_R2.fq.gz fastq file with reverse reads
WW1540_R1.fq.gz fastq file with forward reads
WW1540_R2.fq.gz fastq file with reverse reads
WW1545_R1.fq.gz fastq file with forward reads
WW1545_R2.fq.gz fastq file with reverse reads
WW1567_R1.fq.gz fastq file with forward reads
WW1567_R2.fq.gz fastq file with reverse reads
WW1583_R1.fq.gz fastq file with forward reads
WW1583_R2.fq.gz fastq file with reverse reads
WW1620_R1.fq.gz fastq file with forward reads
WW1620_R2.fq.gz fastq file with reverse reads
WW1629_R1.fq.gz fastq file with forward reads
WW1629_R2.fq.gz fastq file with reverse reads
Xawi_R1.fq.gz fastq file with forward reads
Xawi_R2.fq.gz fastq file with reverse reads
Xe004_R1.fq.gz fastq file with forward reads
Xe004_R2.fq.gz fastq file with reverse reads
Xe005_R1.fq.gz fastq file with forward reads
Xe005_R2.fq.gz fastq file with reverse reads
Xg27_R1.fq.gz fastq file with forward reads
Xg27_R2.fq.gz fastq file with reverse reads
Xg29_R1.fq.gz fastq file with forward reads
Xg29_R2.fq.gz fastq file with reverse reads
Xg9_R1.fq.gz fastq file with forward reads
Xg9_R2.fq.gz fastq file with reverse reads
XrBO6M_R1.fq.gz fastq file with forward reads
XrBO6M_R2.fq.gz fastq file with reverse reads
XrES43_R1.fq.gz fastq file with forward reads
XrES43_R2.fq.gz fastq file with reverse reads
XrHN257_R1.fq.gz fastq file with forward reads
XrHN257_R2.fq.gz fastq file with reverse reads
Xs13_R1.fq.gz fastq file with forward reads
Xs13_R2.fq.gz fastq file with reverse reads
Xs17_R1.fq.gz fastq file with forward reads
Xs17_R2.fq.gz fastq file with reverse reads

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Use and Access: 
This data set is made available under a Creative Commons Public Domain license (CC0 1.0).


To Cite Data: