Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre‐rRNA processing
dc.contributor.author | Sahasranaman, Aarti | en_US |
dc.contributor.author | Dembowski, Jill | en_US |
dc.contributor.author | Strahler, John | en_US |
dc.contributor.author | Andrews, Philip | en_US |
dc.contributor.author | Maddock, Janine | en_US |
dc.contributor.author | Woolford, John L | en_US |
dc.date.accessioned | 2014-01-08T20:34:54Z | |
dc.date.available | 2014-01-08T20:34:54Z | |
dc.date.issued | 2011-10-05 | en_US |
dc.identifier.citation | Sahasranaman, Aarti; Dembowski, Jill; Strahler, John; Andrews, Philip; Maddock, Janine; Woolford, John L (2011). "Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre‐rRNA processing." The EMBO Journal 30(19): 4020-4032. <http://hdl.handle.net/2027.42/102169> | en_US |
dc.identifier.issn | 0261-4189 | en_US |
dc.identifier.issn | 1460-2075 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/102169 | |
dc.publisher | John Wiley & Sons, Ltd | en_US |
dc.subject.other | Roadblock | en_US |
dc.subject.other | Exonucleases | en_US |
dc.subject.other | Pre‐RRNA Processing | en_US |
dc.subject.other | Ribosomal Proteins | en_US |
dc.subject.other | Ribosome Assembly | en_US |
dc.title | Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre‐rRNA processing | en_US |
dc.type | Article | en_US |
dc.rights.robots | IndexNoFollow | en_US |
dc.subject.hlbsecondlevel | Molecular, Cellular and Developmental Biology | en_US |
dc.subject.hlbtoplevel | Health Sciences | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.identifier.pmid | 21926967 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/102169/1/embj2011338-sup-0001.pdf | |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/102169/2/embj2011338.pdf | |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/102169/3/embj2011338-sup-0002.pdf | |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/102169/4/embj2011338-reviewer_comments.pdf | |
dc.identifier.doi | 10.1038/emboj.2011.338 | en_US |
dc.identifier.source | The EMBO Journal | en_US |
dc.identifier.citedreference | Ross PL ( 2004 ) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine‐reactive isobaric tagging reagents. Mol Cell Proteomics 3: 1154 – 1169 | en_US |
dc.identifier.citedreference | Moy TI, Boettner D, Rhodes JC, Silver PA, Askew DS ( 2002 ) Identification of a role for Saccharomyces cerevisiae Cgr1p in pre‐rRNA processing and 60S ribosome subunit synthesis. Microbiol 148: 1081 – 1090 | en_US |
dc.identifier.citedreference | Oeffinger M, Leung A, Lamond A, Tollervey D ( 2002 ) Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis. RNA 5: 626 – 636 | en_US |
dc.identifier.citedreference | Oeffinger M, Tollervey D ( 2003 ) Yeast Nop15p is an RNA‐binding protein required for pre‐rRNA processing and cytokinesis. EMBO J 22: 6573 – 6583 | en_US |
dc.identifier.citedreference | Oeffinger M, Wei KE, DeGrasse JA, Rogers JD, Chait BT, Rout MP ( 2007 ) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4: 951 – 956 | en_US |
dc.identifier.citedreference | Oeffinger M, Zenklusen D, Ferguson A, Wei KE, El Hage A, Tollervey D, Chait BT, Singer RH, Rout MP ( 2009 ) Rrp17 is a eukaryotic exonuclease required for 5′ end processing of pre‐60S ribosomal RNA. Mol Cell 36: 768 – 781 | en_US |
dc.identifier.citedreference | Panse VG, Johnson AW ( 2010 ) Maturation of eukaryotic ribosomes: acquisition of functionality. Trends Biochem Sci 35: 260 – 266 | en_US |
dc.identifier.citedreference | Pestov DG, Stockelman MG, Strezoska Z, Lau LF ( 2001 ) ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs. Nucl Acids Res 29: 3621 – 3630 | en_US |
dc.identifier.citedreference | Pöll G, Braun T, Jakovljevic J, Neueder A, Jakob S, Woolford Jr JL, Tschochner H, Milkereit P ( 2009 ) rRNA maturation in yeast cells depleted of large ribosomal subunit proteins. PLoS One 4: 1 – 13 | en_US |
dc.identifier.citedreference | Rosado IV, Dez C, Lebaron S, Caizergues‐Ferrer M, Henry Y, de la Cruz J ( 2007 ) Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) reveals a low‐molecular‐mass complex containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p involved in early steps of 60S ribosomal subunit biogenesis. Mol Cell Biol 27: 1207 – 1221 | en_US |
dc.identifier.citedreference | Saveanu C, Bienvenu D, Namane A, Gleizes PE, Gas N, Jacquier A, Fromont‐Racine M ( 2001 ) Nog2p, a putative GTPase associated with pre‐60S subunits and required for late 60S maturation steps. EMBO J 20: 6475 – 6484 | en_US |
dc.identifier.citedreference | Saveanu C, Namane A, Gleizes PE, Lebreton A, Rousselle JC, Noaillac‐Depeyre J, Gas N, Jacquier A, Fromont‐Racine M ( 2003 ) Sequential protein association with nascent 60S ribosomal particles. Mol Cell Biol 23: 4449 – 4460 | en_US |
dc.identifier.citedreference | Strezoska Z, Pestov DG, Lau LF ( 2000 ) Bop1 is a mouse WD40 repeat nucleolar protein involved in 28S and 5.8S rRNA processing and 60S ribosome biogenesis. Mol Cell Biol 20: 5516 – 5528 | en_US |
dc.identifier.citedreference | Sykes MT, Williamson JR ( 2009 ) A complex assembly landscape for the 30S ribosomal subunit. Annu Rev Biophys 38: 197 – 215 | en_US |
dc.identifier.citedreference | Tang L, Sahasranaman A, Jakovljevic J, Schleifman E, Woolford Jr JL ( 2008 ) Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7‐ subcomplex in yeast preribosomes. Mol Biol Cell 19: 2844 – 2856 | en_US |
dc.identifier.citedreference | Tarassov K, Messier V, Landry CR, Radinovic S, Serna Molina MM, Shames I, Malitskaya Y, Vogel J, Bussey H, Michnik SW ( 2008 ) An in vivo map of the yeast protein interactome. Science 320: 1465 – 1470 | en_US |
dc.identifier.citedreference | Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J ( 2009 ) Comprehensive molecular structure of the eukaryotic ribosome. Structure 17: 1591 – 1604 | en_US |
dc.identifier.citedreference | van Nues RW, Rientjes JM, van der Sande CA, Zerp SF, Sluiter C, Venema J, Planta RJ, Raué HA ( 1994 ) Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucl Acids Res 22: 912 – 919 | en_US |
dc.identifier.citedreference | Wang M, Pestov DG ( 2011 ) 5′‐end surveillance by Xrn2 acts as a shared mechanism for mammalian pre‐rRNA maturation and decay. Nucl Acids Res 39: 1811 – 1822 | en_US |
dc.identifier.citedreference | Xiang S, Cooper‐Morgan A, Jiao X, Kiledjian M, Manley JL, Tong L ( 2009 ) Structure and function of the 5′ → 3′ exoribonuclease Rat1 and its activating partner Rai1. Nature 458: 784 – 788 | en_US |
dc.identifier.citedreference | Xue Y, Bai X, Lee I, Kallstrom G, Ho J, Brown J, Stevens A, Johnson AW ( 2000 ) Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. Mol Cell Biol 20: 4006 – 4015 | en_US |
dc.identifier.citedreference | Yeh LC, Thweatt R, Lee JC ( 1990 ) Internal transcribed spacer 1 of the yeast precursor ribosomal RNA. Higher order structure and common structural motifs. Biochemistry 29: 5911 – 5918 | en_US |
dc.identifier.citedreference | Zhang J, Harnpicharnchai P, Jakovljevic J, Tang L, Guo Y, Oeffinger M, Rout MP, Hiley SL, Hughes T, Woolford Jr JL ( 2007 ) Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes. Genes Dev 21: 2580 – 2592 | en_US |
dc.identifier.citedreference | Adams CC, Jakovljevic J, Roman J, Harnpicharnchai P, Woolford Jr JL ( 2002 ) Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits. RNA 8: 150 – 165 | en_US |
dc.identifier.citedreference | Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K ( 1994 ) Current Protocols in Molecular Biology. John Wiley & Sons Inc.: NY, USA | en_US |
dc.identifier.citedreference | Babiano R, de la Cruz J ( 2010 ) Ribosomal protein L35 is required for 27SB pre‐rRNA processing in Saccharomyces cerevisiae. Nucl Acids Res 38: 5177 – 5192 | en_US |
dc.identifier.citedreference | Baßler J, Kallas M, Pertschy B, Ulbrich C, Thoms M, Hurt E ( 2010 ) The AAA‐ATPase Rea1 drives removal of biogenesis factors during multiple stages of 60S ribosome assembly. Mol Cell 38: 712 – 721 | en_US |
dc.identifier.citedreference | Ben‐Shem A, Jenner L, Yusupova G, Yusupov M ( 2010 ) Crystal structure of the eukaryotic ribosome. Science 330: 1203 – 1209 | en_US |
dc.identifier.citedreference | Burger F, Daugeron MC, Linder P ( 2000 ) Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis. Nucl Acids Res 28: 2315 – 2323 | en_US |
dc.identifier.citedreference | Dichtl B, Tollervey D ( 1997 ) Pop3p is essential for the activity of the RNase MRP and RNase P ribonucleoproteins in vivo. EMBO J 16: 417 – 429 | en_US |
dc.identifier.citedreference | Dragon F, Gallagher JE, Compagnone‐Post PA, Mitchell BM, Porwancher KA, Wehner KA, Wormsley S, Settlage RE, Shabanowitz J, Osheim Y, Beyer AL, Hunt DF, Baserga SJ ( 2002 ) A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417: 967 – 970 | en_US |
dc.identifier.citedreference | Dunbar DA, Dragon F, Lee SJ, Baserga SJ ( 2000 ) A nucleolar protein related to ribosomal protein L7 is required for an early step in large ribosomal subunit biogenesis. Proc Natl Acad Sci USA 97: 13027 – 13032 | en_US |
dc.identifier.citedreference | Fang F, Phillips S, Butler JS ( 2005 ) Rat1p and Rai1p function with the nuclear exosome in the processing and degradation of rRNA precursors. RNA 11: 1571 – 1578 | en_US |
dc.identifier.citedreference | Fatica A, Oeffinger M, Tollervey D, Bozzoni I ( 2003 ) Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits. RNA 9: 1431 – 1436 | en_US |
dc.identifier.citedreference | Fleischer TC, Weaver CM, McAfee KJ ( 2006 ) Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes. Genes Dev 20: 1294 – 1307 | en_US |
dc.identifier.citedreference | Gadal O, Strauss D, Petfalski E, Gleizes PE, Gas N, Tollervey D, Hurt E ( 2002 ) Rlp7p is associated with 60S preribosomes, restricted to the granular component of the nucleolus, and required for pre‐rRNA processing. J Cell Biol 157: 941 – 951 | en_US |
dc.identifier.citedreference | Geerlings TH, Vos JC, Raué HA ( 2000 ) The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′ → 3′ exonucleases. RNA 12: 1698 – 1703 | en_US |
dc.identifier.citedreference | Granneman S, Kudla G, Petfalski E, Tollervey D ( 2009 ) Identification of protein binding sites on U3 snoRNA and pre‐rRNA by UV cross‐linking and high‐throughput analysis of cDNAs. Proc Natl Acad Sci USA 106: 9613 – 9618 | en_US |
dc.identifier.citedreference | Granneman S, Petfalski E, Tollervey D ( 2011 ) A cluster of ribosome synthesis factors regulate pre‐rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease. EMBO J (advance online publication 2 August 2011; doi:10.1038/emboj.2011.256) | en_US |
dc.identifier.citedreference | Henras AK, Soudet J, Gérus M, Lebaron S, Caizergues‐Ferrer M, Mougin A, Henry Y ( 2008 ) The post‐transcriptional steps of eukaryotic ribosome biogenesis. Cell Mol Life Sci 14: 1 – 26 | en_US |
dc.identifier.citedreference | Henry Y, Wood H, Morrissey JP, Petfalski E, Kearsey S, Tollervey D ( 1994 ) The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J 13: 2452 – 2463 | en_US |
dc.identifier.citedreference | Horsey EW, Jakovljevic J, Miles TD, Harnpicharnchai P, Woolford Jr JL ( 2004 ) Role of the yeast Rrp1 protein in the dynamics of pre‐ribosome maturation. RNA 5: 813 – 827 | en_US |
dc.identifier.citedreference | Jiang M, Sullivan SM, Walker AK, Strahler JR, Andrews PC, Maddock JR ( 2007 ) Identification of novel Escherichia coli ribosome‐associated proteins using isobaric tags and multidimensional protein identification techniques. J Bacteriol 189: 3434 – 3444 | en_US |
dc.identifier.citedreference | Kressler D, Hurt E, Baßler J ( 2009 ) Driving ribosome assembly. Biochim Biophys Acta 1803: 673 – 683 | en_US |
dc.identifier.citedreference | Kressler D, Rojo M, Linder P, de la Cruz J ( 1999 ) Spb1p is a putative methyltransferase required for 60S ribosomal subunit biogenesis in Saccharomyces cerevisiae. Nucl Acids Res 27: 4598 – 4608 | en_US |
dc.identifier.citedreference | Kressler D, Roser D, Pertschy B, Hurt E ( 2008 ) The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre‐60S particles. J Cell Biol 181: 935 – 944 | en_US |
dc.identifier.citedreference | LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E, Jacquier A, Tollervey D ( 2005 ) RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 121: 713 – 724 | en_US |
dc.identifier.citedreference | Lapik YR, Fernandes CJ, Lau LF, Pestov DG ( 2004 ) Physical and functional interaction between Pes1 and Bop1 in mammalian ribosome biogenesis. Mol Cell 15: 17 – 29 | en_US |
dc.identifier.citedreference | Lebreton A, Saveanu C, Decourty L, Jacquier A, Fromont‐Racine M ( 2006 ) Nsa2 is an unstable, conserved factor required for the maturation of 27SB pre‐rRNAs. J Biol Chem 281: 27099 – 27108 | en_US |
dc.identifier.citedreference | Longtine MS, McKenzie III A, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR ( 1998 ) Additional modules for versatile and economical PCR‐based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953 – 961 | en_US |
dc.identifier.citedreference | Lygerou Z, Mitchell P, Petfalski E, Séraphin B, Tollervey D ( 1996 ) The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins. Genes Dev 8: 1423 – 1433 | en_US |
dc.identifier.citedreference | Miles TD, Jakovljevic J, Horsey EW, Harnpicharnchai P, Tang L, Woolford Jr JL ( 2005 ) Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes. Mol Cell Biol 25: 10419 – 10432 | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
Files in this item
Remediation of Harmful Language
The University of Michigan Library aims to describe library materials in a way that respects the people and communities who create, use, and are represented in our collections. Report harmful or offensive language in catalog records, finding aids, or elsewhere in our collections anonymously through our metadata feedback form. More information at Remediation of Harmful Language.
Accessibility
If you are unable to use this file in its current format, please select the Contact Us link and we can modify it to make it more accessible to you.