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Island hopping, long‐distance dispersal and species radiation in the Western Indian Ocean: historical biogeography of the Coffeeae alliance (Rubiaceae)

dc.contributor.authorKainulainen, Kent
dc.contributor.authorRazafimandimbison, Sylvain G.
dc.contributor.authorWikström, Niklas
dc.contributor.authorBremer, Birgitta
dc.date.accessioned2017-10-05T18:20:37Z
dc.date.available2018-12-03T15:34:04Zen
dc.date.issued2017-09
dc.identifier.citationKainulainen, Kent; Razafimandimbison, Sylvain G.; Wikström, Niklas ; Bremer, Birgitta (2017). "Island hopping, long‐distance dispersal and species radiation in the Western Indian Ocean: historical biogeography of the Coffeeae alliance (Rubiaceae)." Journal of Biogeography 44(9): 1966-1979.
dc.identifier.issn0305-0270
dc.identifier.issn1365-2699
dc.identifier.urihttps://hdl.handle.net/2027.42/138431
dc.description.abstractAimThe Western Indian Ocean region (WIOR) is home to a very diverse and largely unique flora that has mainly originated via long‐distance dispersals. The aim of this study is to gain insight into the origins of the WIOR biodiversity and to understand the dynamics of colonization events between the islands. We investigate spatial and temporal hypotheses of the routes of dispersal, and compare the dispersal patterns of plants of the Coffeeae alliance (Rubiaceae) and their dispersers. Rubiaceae is the second most species‐rich plant family in Madagascar, and includes many endemic genera. The neighbouring archipelagos of the Comoros, Mascarenes and Seychelles also harbour several endemic Rubiaceae.LocationThe islands of the Western Indian Ocean.MethodsPhylogenetic relationships and divergence times were reconstructed from plastid DNA data of an ingroup sample of 340 species, using Bayesian inference. Ancestral areas and range evolution history were inferred by a maximum likelihood method that takes topological uncertainty into account.ResultsAt least 15 arrivals to Madagascar were inferred, the majority of which have taken place within the last 10 Myr. Most dispersal events were supported as being from mainland Africa, but Catunaregam may have dispersed from Asia. Although most Coffeeae alliance lineages are zoochorous, the general pattern of dispersals from Africa is incongruent with the biogeographic origins of the extant Malagasy volant frugivores. Several out‐of‐Madagascar dispersals were inferred to the neighbouring islands, as well as back‐colonizations of Africa.Main conclusionsThe African flora has been of foremost importance as source of dispersal to the islands of the Western Indian Ocean. Following the colonization of Madagascar, rapid radiations appear to have taken place in some clades, and Madagascar has also been an important source area for subsequent dispersal to the Comoros, Mascarenes and Seychelles.
dc.publisherWiley Periodicals, Inc.
dc.publisherInTech
dc.subject.othermolecular dating
dc.subject.otherSeychelles
dc.subject.otherangiosperm
dc.subject.otherComoros
dc.subject.otherdispersal–extinction–cladogenesis
dc.subject.otherdivergence times
dc.subject.otherisland biogeography
dc.subject.otherlong‐distance dispersal
dc.subject.otherMadagascar
dc.subject.otherMascarenes
dc.titleIsland hopping, long‐distance dispersal and species radiation in the Western Indian Ocean: historical biogeography of the Coffeeae alliance (Rubiaceae)
dc.typeArticleen_US
dc.rights.robotsIndexNoFollow
dc.subject.hlbsecondlevelGeography and Maps
dc.subject.hlbtoplevelSocial Sciences
dc.description.peerreviewedPeer Reviewed
dc.description.bitstreamurlhttps://deepblue.lib.umich.edu/bitstream/2027.42/138431/1/jbi12981_am.pdf
dc.description.bitstreamurlhttps://deepblue.lib.umich.edu/bitstream/2027.42/138431/2/jbi12981.pdf
dc.identifier.doi10.1111/jbi.12981
dc.identifier.sourceJournal of Biogeography
dc.identifier.citedreferenceShapiro, B., Sibthorpe, D., Rambaut, A., Austin, J., Wragg, G.M., Bininda‐Emonds, O.R.P., Lee, P.L.M. & Cooper, A. ( 2002 ) Flight of the dodo. Science, 295, 1683.
dc.identifier.citedreferenceRee, R.H. & Smith, S.A. ( 2008 ) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4 – 14.
dc.identifier.citedreferenceRenner, S.S. ( 2004 ) Multiple Miocene Melastomataceae dispersal between Madagascar, Africa, and India. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 1485 – 1494.
dc.identifier.citedreferenceRonquist, F. & Huelsenbeck, J.P. ( 2003 ) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 – 1574.
dc.identifier.citedreferenceSamonds, K.E., Godfrey, L.R., Ali, J.R., Goodman, S.M., Vences, M., Sutherland, M.R., Irwin, M.T. & Krause, D.W. ( 2013 ) Imperfect isolation: factors and filters shaping Madagascar’s extant vertebrate fauna. PLoS ONE, 8, e62086.
dc.identifier.citedreferenceSamson, N., Bausher, M.G., Lee, S.‐B., Jansen, R.K. & Daniell, H. ( 2007 ) The complete nucleotide sequence of the coffee ( Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships among angiosperms. Plant Biotechnology Journal, 5, 339 – 353.
dc.identifier.citedreferenceSchatz, G.E. ( 1996 ) Malagasy/Indo‐australo‐malesian phytogeographic connections. Biogéographie de Madagascar (ed. by W.R. Lourenço ), pp. 73 – 84. ORSTOM, Paris.
dc.identifier.citedreferenceSchweizer, M., Seehausen, O., Guntert, M. & Hertwig, S.T. ( 2010 ) The evolutionary diversification of parrots supports a taxon pulse model with multiple trans‐oceanic dispersal events and local radiations. Molecular Phylogenetics and Evolution, 54, 984 – 994.
dc.identifier.citedreferenceShilton, L.A., Altringham, J.D., Compton, S.G. & Whittaker, R.J. ( 1999 ) Old World fruit bats can be long–distance seed dispersers through extended retention of viable seeds in the gut. Proceedings of the Royal Society B: Biological Sciences, 266, 219 – 223.
dc.identifier.citedreferenceSimpson, G.G. ( 1940 ) Mammals and land bridges. Journal of the Washington Academy of Sciences, 30, 137 – 163.
dc.identifier.citedreferenceStaden, R. ( 1996 ) The Staden sequence analysis package. Molecular Biotechnology, 5, 233 – 241.
dc.identifier.citedreferenceStaden, R., Beal, K.F. & Bonfield, J.K. ( 2000 ) The staden package, 1998. Bioinformatics methods and protocols, vol. 132 of Methods in Molecular Biology (ed. by S. Misener and S.A. Krawets ), pp. 115 – 130. Humana press Inc., New Jersey USA.
dc.identifier.citedreferenceStorey, B.C. ( 1995 ) The role of mantle plumes in continental breakup: case histories from Gondwanaland. Nature, 377, 301 – 308.
dc.identifier.citedreferenceStorey, M., Mahoney, J.J., Saunders, A.D., Duncan, R.A., Kelley, S.P. & Coffin, M.F. ( 1995 ) Timing of hot‐spot related volcanism and the breakup of Madagascar and India. Science, 267, 852 – 855.
dc.identifier.citedreferenceStride, G., Nylinder, S. & Swenson, U. ( 2014 ) Revisiting the biogeography of Sideroxylon (Sapotaceae) and an evaluation of the taxonomic status of Argania and Spiniluma. Australian Systematic Botany, 27, 104 – 118.
dc.identifier.citedreferenceStrijk, J.S., Noyes, R.D., Strasberg, D., Cruaud, C., Gavory, F., Chase, M.W., Abbott, R.J. & Thébaud, C. ( 2012 ) In and out of Madagascar: dispersal to peripheral islands, insular speciation and diversification of Indian Ocean daisy trees ( Psiadia, Asteraceae). PLoS ONE, 7, e42932.
dc.identifier.citedreferenceTosh, J., Davis, A.P., Dessein, S., De Block, P., Huysmans, S., Fay, M.F., Smets, E. & Robbrecht, E. ( 2009 ) Phylogeny of Tricalysia (Rubiaceae) and its relationships with allied genera based on plastid DNA data: resurrection of the genus Empogona. Annals of the Missouri Botanical Garden, 96, 194 – 213.
dc.identifier.citedreferenceVan Steenis, C.G.G.J. ( 1962 ) The land‐bridge theory in botany. Blumea, 11, 235 – 372.
dc.identifier.citedreferenceVences, M., Wollenberg, K.C., Vieites, D.R. & Lees, D.C. ( 2009 ) Madagascar as a model region of species diversification. Trends in Ecology and Evolution, 24, 456 – 465.
dc.identifier.citedreferenceWarren, B.H., Bermingham, E., Prys‐Jones, R.P. & Thébaud, C. ( 2005 ) Tracking island colonization history and phenotypic shifts in Indian Ocean bulbuls (Hypsipetes: Pycnonotidae). Biological Journal of the Linnean Society, 85, 271 – 287.
dc.identifier.citedreferenceWarren, B.H., Strasberg, D., Bruggemann, J.H., Prys‐Jones, R.P. & Thébaud, C. ( 2010 ) Why does the biota of the Madagascar region have such a strong Asiatic flavour? Cladistics, 26, 526 – 538.
dc.identifier.citedreferenceWeigelt, P., Steinbauer, M.J., Cabral, J.S. & Kreft, H. ( 2016 ) Late Quaternary climate change shapes island biodiversity. Nature, 532, 99 – 102.
dc.identifier.citedreferenceWells, N.A. ( 2003 ) Some hypotheses on the Mezozoic and Cenozoic paleoenvironmental history of Madagascar. The natural history of Madagascar (ed. by S.M. Goodman and J.P. Benstead ), pp. 16 – 34. University of Chicago Press, Chicago.
dc.identifier.citedreferenceWikström, N., Avino, M., Razafimandimbison, S.G. & Bremer, B. ( 2010 ) Historical biogeography of the coffee family (Rubiaceae, Gentianales) in Madagascar: case studies from the tribes Knoxieae, Naucleeae, Paederieae and Vanguerieae. Journal of Biogeography, 37, 1094 – 1113.
dc.identifier.citedreferenceWikström, N., Kainulainen, K., Razafimandimbison, S.G., Smedmark, J.E.E. & Bremer, B. ( 2015 ) A revised time tree of the Asterids: establishing a temporal framework for evolutionary studies of the coffee family (Rubiaceae). PLoS ONE, 10, e0126690.
dc.identifier.citedreferenceYang, Z. & Rannala, B. ( 1997 ) Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Molecular Biology and Evolution, 14, 717 – 724.
dc.identifier.citedreferenceYoder, A.D. & Nowak, M.D. ( 2006 ) Has vicariance or dispersal been the predominant biogeographic force in Madagascar? Only time will tell. Annual Review of Ecology, Evolution, and Systematics, 37, 405 – 431.
dc.identifier.citedreferenceYuan, Y.‐M., Wohlhauser, S., Möller, M., Klackenberg, J., Callmander, M. & Küpfer, P. ( 2005 ) Phylogeny and biogeography of Exacum (Gentianaceae): a disjunctive distribution in the Indian Ocean Basin resulted from long distance dispersal and extensive radiation. Systematic Biology, 54, 21 – 34.
dc.identifier.citedreferenceAgnarsson, I. & Kuntner, M. ( 2012 ) The generation of a biodiversity hotspot: biogeography and phylogeography of the Western Indian Ocean Islands. Current topics in phylogenetics and phylogeography of terrestrial and aquatic systems (ed. by K. Anamthawat‐Jonsson ), pp. 33 – 82. InTech, Rijeka.
dc.identifier.citedreferenceAli, J.R. & Huber, M. ( 2010 ) Mammalian biodiversity on Madagascar controlled by ocean currents. Nature, 463, 653 – 656.
dc.identifier.citedreferenceBacon, C.D., Simmons, M.P., Archer, R.H., Zhao, L.‐H. & Andriantiana, J. ( 2016 ) Biogeography of the Malagasy Celastraceae: multiple independent origins followed by widespread dispersal of genera from Madagascar. Molecular Phylogenetics and Evolution, 94, 365 – 382.
dc.identifier.citedreferenceBuerki, S., Devey, D.S., Callmander, M.W., Phillipson, P.B. & Forest, F. ( 2013 ) Spatio‐temporal history of the endemic genera of Madagascar. Botanical Journal of the Linnean Society, 171, 304 – 329.
dc.identifier.citedreferenceCallmander, M.W., Phillipson, P.B., Schatz, G.E., Andriambololonera, S., Rabarimanarivo, M., Rakotonirina, N., Raharimampionona, J., Chatelain, C., Gautier, L. & Lowry, P.P., II ( 2011 ) The endemic and non‐endemic vascular flora of Madagascar updated. Plant Ecology and Evolution, 144, 121 – 125.
dc.identifier.citedreferenceCollier, J.S., Sansom, V., Ishizuka, O., Taylor, R.N., Minshull, T.A. & Whitmarch, R.B. ( 2008 ) Age of Seychelles‐India break‐up. Earth and Planetary Science Letters, 272, 264 – 277.
dc.identifier.citedreferenceDarriba, D., Taboada, G.L., Doallo, R. & Posada, D. ( 2012 ) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772.
dc.identifier.citedreferenceDavis, A.P., Chester, M., Maurin, O. & Fay, M.F. ( 2007 ) Searching for the relatives of Coffea (Rubiaceae, Ixoroideae): the circumscription and phylogeny of Coffeeae based on plastid sequence data and morphology. American Journal of Botany, 94, 313 – 329.
dc.identifier.citedreferenceDavis, A.P., Rakotonasolo, F. & De Block, P. ( 2010 ) Coffea toshii sp. nov. (Rubiaceae) from Madagascar. Nordic Journal of Botany, 28, 134 – 136.
dc.identifier.citedreferenceDavis, A.P., Tosh, J., Ruch, N. & Fay, M.F. ( 2011 ) Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; implications for the size, morphology, distribution and evolutionary history of Coffea. Botanical Journal of the Linnean Society, 167, 357 – 377.
dc.identifier.citedreferenceDe Block, P. ( 2003 ) Coptosperma and related genera (tribe Pavetteae). The natural history of Madagascar (ed. by S.M. Goodman and J.P. Benstead ), pp. 438 – 440. University of Chicago Press, Chicago.
dc.identifier.citedreferenceDoyle, J.J. & Dickson, E.E. ( 1987 ) Preservation of plant‐samples for DNA restriction endonuclease analysis. Taxon, 36, 715 – 722.
dc.identifier.citedreferenceDrummond, A.J. & Rambaut, A. ( 2007 ) beast: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
dc.identifier.citedreferenceDrummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. ( 2012 ) Bayesian phylogenetics with beau ti and the beast 1.7. Molecular Biology and Evolution, 29, 1969 – 1973.
dc.identifier.citedreferenceDuncan, R.A. ( 1990 ) The volcanic record of the Réunion hotspot. Proceedings of the Ocean Drilling Program, Scientific Results, 115, 3 – 10.
dc.identifier.citedreferenceEdgar, R.C. ( 2004 ) Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792 – 1797.
dc.identifier.citedreferenceGardner, A.S. ( 1986 ) The biogeography of the lizards of the Seychelles Islands. Journal of Biogeography, 13, 237 – 253.
dc.identifier.citedreferenceGernhard, T. ( 2008 ) The conditioned reconstructed process. Journal of Theoretical Biology, 253, 769 – 778.
dc.identifier.citedreferenceGovaerts, R., Andersson, L., Robbrecht, E., Bridson, D., Davis, A., Schanzer, I. & Sonke, B. ( 2013 ) World checklist of Rubiaceae. Kew: The Board of Trustees of the Royal Botanic Gardens. Available at: http://apps.kew.org/wcsp/ (accessed 10 March 2013).
dc.identifier.citedreferenceHall, T.A. ( 1999 ) BioEdit: a user‐friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 – 98.
dc.identifier.citedreferenceHawkins, A.F.A. & Goodman, S.M. ( 2003 ) Introduction to the birds. The natural history of Madagascar (ed. by S.M. Goodman and J.P. Benstead ), pp. 1019 – 1044. University of Chicago Press, Chicago.
dc.identifier.citedreferenceHuelsenbeck, J.P. & Ronquist, F. ( 2001 ) MrBayes: Bayesian inference of phylogeny. Bioinformatics, 17, 754 – 755.
dc.identifier.citedreferenceHutcheon, J.M. ( 2003 ) Frugivory by Malagasy bats. The natural history of Madagascar (ed. by S.M. Goodman and J.P. Benstead ), pp. 1205 – 1207. University of Chicago Press, Chicago.
dc.identifier.citedreferenceKainulainen, K. & Bremer, B. ( 2014 ) Phylogeny of Euclinia and allied genera of Gardenieae (Rubiaceae), and description of Melanoxerus, an endemic genus of Madagascar. Taxon, 63, 819 – 830.
dc.identifier.citedreferenceKainulainen, K., Razafimandimbison, S.G. & Bremer, B. ( 2013 ) Phylogenetic relationships and new tribal delimitations in subfamily Ixoroideae (Rubiaceae). Botanical Journal of the Linnean Society, 173, 387 – 406.
dc.identifier.citedreferenceKoechlin, J. ( 1972 ) Flora and vegetation of Madagascar. Biogeography and ecology in Madagascar (ed. by R. Battistin and G. Richard‐Vindard ), pp. 145 – 190. Junk, The Hague.
dc.identifier.citedreferenceLe Péchon, T., Dubuisson, J.‐Y., Haevermans, T., Cruaud, C., Couloux, A. & Gigord, L.D.B. ( 2010 ) Multiple colonizations from Madagascar and converged acquisition of dioecy in the Mascarene Dombeyoideae (Malvaceae) as inferred from chloroplast and nuclear DNA sequence analyses. Annals of Botany, 106, 343 – 357.
dc.identifier.citedreferenceLeroy, J.‐F. ( 1978 ) Composition, origin, and affinities of the Madagascan vascular flora. Annals of the Missouri Botanical Garden, 65, 535 – 589.
dc.identifier.citedreferenceLosos, J.B. & Ricklefs, R.E. ( 2009 ) Adaptation and diversification on islands. Nature, 457, 830 – 836.
dc.identifier.citedreferenceMaurin, O., Davis, A.P., Chester, M., Mvungi, E.F., Jaufeerally‐Fakim, Y. & Fay, M.F. ( 2007 ) Towards a Phylogeny for Coffea (Rubiaceae): identifying well‐supported lineages based on nuclear and plastid DNA sequences. Annals of Botany, 100, 1565 – 1583.
dc.identifier.citedreferenceMcDougall, I. ( 1971 ) The geochronology and evolution of the young volcanic island of Réunion, Indian Ocean. Geochimica et Cosmochimica Acta, 35, 261 – 270.
dc.identifier.citedreferenceMcDougall, I., Upton, B.G.J. & Wadsworth, W.J. ( 1965 ) A geological reconnaissance of the Rodriguez island, Indian Ocean. Nature, 206, 26 – 27.
dc.identifier.citedreferenceMicheneau, C., Carlsward, B.S., Fay, M.F., Bytebier, B., Pailler, T. & Chase, M.W. ( 2008 ) Phylogenetics and biogeography of Mascarene angraecoid orchids (Vandeae, Orchidaceae). Molecular Phylogenetics and Evolution, 46, 908 – 922.
dc.identifier.citedreferenceMiller, M.A., Pfeiffer, W. & Schwartz, T. ( 2010 ) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the gateway computing environments workshop (GCE), pp. 1 – 8, IEEE, New Orleans, LA.
dc.identifier.citedreferenceMouly, A., Kainulainen, K., Persson, C., Davis, A.P., Razafimandimbison, S.G. & Bremer, B. ( 2014 ) In search for a phylogenetic structure and clade circumscriptions in the Gardenieae complex (Rubiaceae). Taxon, 63, 801 – 818.
dc.identifier.citedreferenceMoyle, R.G., Chesser, R.T., Prum, R.O., Schikler, P. & Cracraft, J. ( 2006 ) Phylogeny and evolutionary history of Old World Suboscine birds (Aves: Eurylaimides). American Museum Novitates, 3544, 1 – 22.
dc.identifier.citedreferenceMyers, N., Mittenmeier, R.A., Mittenmeier, C.G., da Fonseca, G.A.B. & Kent, J. ( 2000 ) Biodiversity hotspots for conservation priorities. Nature, 403, 853 – 858.
dc.identifier.citedreferenceNougier, J., Cantagrel, J.M. & Karche, J.P. ( 1986 ) The Comores archipelago in the western Indian Ocean: volcanology, geochronology, and geodynamic setting. Journal of African Earth Sciences, 5, 135 – 145.
dc.identifier.citedreferenceNowak, M.D., Haller, B.C. & Yoder, A.D. ( 2014 ) The founding of Mauritian endemic coffee trees by a synchronous long‐distance dispersal event. Journal of Evolutionary Biology, 27, 1229 – 1239.
dc.identifier.citedreferenceO’Brien, J., Mariani, C., Olson, L., Russell, A.L., Say, L., Yoder, A.D. & Hayden, T.J. ( 2009 ) Multiple colonisations of the western Indian Ocean by Pteropus fruit bats (Megachiroptera: Pteropodidae): the furthest islands were colonised first. Molecular Phylogenetics and Evolution, 51, 294 – 303.
dc.identifier.citedreferencePlummer, P.S. & Belle, E.R. ( 1995 ) Mesozoic tectono‐stratigraphic evolution of the Seychelles microcontinent. Sedimentary Geology, 96, 73 – 91.
dc.identifier.citedreferenceRage, J.C. ( 2003 ) Relationships of the Malagasy fauna during the late cretaceous: northern or southern routes? Acta Paleontologica Polonica, 48, 661 – 662.
dc.identifier.citedreferenceRakotonasolo, F. & Davis, A. ( 2006 ) Six species of Madagascan Genipa transferred to Hyperacanthus (Rubiaceae‐Gardenieae) and new data on general morphology, placentation and ovary structure in Hyperacanthus. Taxon, 55, 387 – 396.
dc.identifier.citedreferenceRambaut, A. & Drummond, A.J. ( 2013 ) Tracer v. 1.6. Available at: http://beast.bio.ed.ac.uk/ software/tracer (accessed on 12 May 2014).
dc.identifier.citedreferenceRazafimandimbison, S.G., Kainulainen, K., Wong, K.M., Beaver, K. & Bremer, B. ( 2011 ) Molecular support for a basal grade of morphologically distinct, monotypic genera in the species‐rich Vanguerieae alliance (Rubiaceae, Ixoroideae): its systematic and conservation implications. Taxon, 60, 941 – 951.
dc.owningcollnameInterdisciplinary and Peer-Reviewed


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