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Biological Network Exploration with Cytoscape 3
dc.contributor.authorSu, Gang
dc.contributor.authorMorris, John H.
dc.contributor.authorDemchak, Barry
dc.contributor.authorBader, Gary D.
dc.date.accessioned2018-05-15T20:12:55Z
dc.date.available2018-05-15T20:12:55Z
dc.date.issued2014-09
dc.identifier.citationSu, Gang; Morris, John H.; Demchak, Barry; Bader, Gary D. (2014). "Biological Network Exploration with Cytoscape 3." Current Protocols in Bioinformatics 47(1): 8.13.1-8.13.24.
dc.identifier.issn1934-3396
dc.identifier.issn1934-340X
dc.identifier.urihttps://hdl.handle.net/2027.42/143619
dc.description.abstractCytoscape is one of the most popular open‐source software tools for the visual exploration of biomedical networks composed of protein, gene, and other types of interactions. It offers researchers a versatile and interactive visualization interface for exploring complex biological interconnections supported by diverse annotation and experimental data, thereby facilitating research tasks such as predicting gene function and constructing pathways. Cytoscape provides core functionality to load, visualize, search, filter, and save networks, and hundreds of Apps extend this functionality to address specific research needs. The latest generation of Cytoscape (version 3.0 and later) has substantial improvements in function, user interface, and performance relative to previous versions. This protocol aims to jump‐start new users with specific protocols for basic Cytoscape functions, such as installing Cytoscape and Cytoscape Apps, loading data, visualizing and navigating the networks, visualizing network associated data (attributes), and identifying clusters. It also highlights new features that benefit experienced users. Curr. Protoc. Bioinform. 47:8.13.1‐8.13.24. © 2014 by John Wiley & Sons, Inc.
dc.publisherAssociation for the Advancement of Artificial Intelligence
dc.publisherWiley Periodicals, Inc.
dc.subject.otherCytoscape
dc.subject.othernetwork analysis
dc.subject.otherinteractive network visualization
dc.titleBiological Network Exploration with Cytoscape 3
dc.typeArticleen_US
dc.rights.robotsIndexNoFollow
dc.subject.hlbsecondlevelMolecular, Cellular and Developmental Biology
dc.subject.hlbsecondlevelGenetics
dc.subject.hlbsecondlevelBiological Chemistry
dc.subject.hlbtoplevelHealth Sciences
dc.subject.hlbtoplevelScience
dc.description.peerreviewedPeer Reviewed
dc.description.bitstreamurlhttps://deepblue.lib.umich.edu/bitstream/2027.42/143619/1/cpbi0813.pdf
dc.identifier.doi10.1002/0471250953.bi0813s47
dc.identifier.sourceCurrent Protocols in Bioinformatics
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dc.owningcollnameInterdisciplinary and Peer-Reviewed


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