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Phylogeny of Acanthophyllum s.l. revisited: An update on generic concept and sectional classification
dc.contributor.authorPirani, Atefeh
dc.contributor.authorMoazzeni, Hamid
dc.contributor.authorZarre, Shahin
dc.contributor.authorRabeler, Richard K.
dc.contributor.authorOxelman, Bengt
dc.contributor.authorPavlenko, Alexander V.
dc.contributor.authorKovalchuk, Andriy
dc.date.accessioned2020-08-10T20:54:17Z
dc.date.availableWITHHELD_11_MONTHS
dc.date.available2020-08-10T20:54:17Z
dc.date.issued2020-06
dc.identifier.citationPirani, Atefeh; Moazzeni, Hamid; Zarre, Shahin; Rabeler, Richard K.; Oxelman, Bengt; Pavlenko, Alexander V.; Kovalchuk, Andriy (2020). "Phylogeny of Acanthophyllum s.l. revisited: An update on generic concept and sectional classification." TAXON 69(3): 500-514.
dc.identifier.issn0040-0262
dc.identifier.issn1996-8175
dc.identifier.urihttps://hdl.handle.net/2027.42/156179
dc.description.abstractThe generic boundary of the broadly defined Acanthophyllum s.l., the third‐largest genus of the tribe Caryophylleae (Caryophyllaceae), has been a subject of taxonomic confusion. Acanthophyllum s.l. now includes five minor genera previously recognized as independent. Among these small genera, the inclusion of Allochrusa, Ochotonophila, and Scleranthopsis within Acanthophyllum s.l. was confirmed by previous molecular studies, while the positions of Diaphanoptera and Kuhitangia remained uncertain. We have performed an updated molecular study of Acanthophyllum s.l. including an increased sampling of the genera and sections assigned to this group, using intron sequences of the chloroplast gene rps16 and nuclear ribosomal internal transcribed spacer (ITS) sequences. Cyathophylla, Heterochroa, and Saponaria were chosen as outgroups for performing phylogenetic analyses using maximum likelihood and Bayesian methods. The present results suggest that, in addition to the genera mentioned above, both Diaphanoptera and Kuhitangia should also be synonymized within Acanthophyllum. Sections Diaphanoptera, Kuhitangia and Pseudomacrostegia are introduced as new infrageneric taxa within Acanthophyllum. Our results also indicate that some annual species of Saponaria are closely related to Acanthophyllum.
dc.publisherJohn Wiley & Sons, Inc.
dc.subject.othersect. Macrostegia
dc.subject.otherCaryophylleae
dc.subject.otherannual Saponaria
dc.subject.otherDiaphanoptera
dc.subject.otherIrano‐Turanian
dc.subject.otherKuhitangia
dc.titlePhylogeny of Acanthophyllum s.l. revisited: An update on generic concept and sectional classification
dc.typeArticle
dc.rights.robotsIndexNoFollow
dc.subject.hlbsecondlevelBiology
dc.subject.hlbtoplevelScience
dc.description.peerreviewedPeer Reviewed
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/156179/2/tax12241.pdfen_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/156179/1/tax12241_am.pdfen_US
dc.identifier.doi10.1002/tax.12241
dc.identifier.sourceTAXON
dc.identifier.citedreferencePopp, M. & Oxelman, B. 2007. Origin and evolution of North American polyploid Silene (Caryophyllaceae). Amer. J. Bot. 94: 330 – 349.
dc.identifier.citedreferenceMahmoodi, M. & Nejad Falatoury, A. 2016. Allochrusa lutea (Caryophylloideae, Caryophyllaceae) a new species from Iran. Phytotaxa 277: 191 – 198.
dc.identifier.citedreferenceMinh, B.Q., Nguyen, M.A.T. & Haeseler, A. von 2013. Ultrafast approximation for phylogenetic bootstrap. Molec. Biol. Evol. 30: 1188 – 1195.
dc.identifier.citedreferenceMoazzeni, H., Zarre, S., Pfeil, B.E., Bertrand, Y.J.K., German, D.A., Al‐Shehbaz, I.A., Mummenhoff, K. & Oxelman, B. 2014. Phylogenetic perspectives on diversification and character evolution in the species‐rich genus Erysimum (Erysimeae; Brassicaceae) based on a densely sampled ITS approach. Bot. J. Linn. Soc. 175: 497 – 522.
dc.identifier.citedreferenceNoroozi, J., Pirani, A., Moazzeni, H., Mahmoodi, M., Zare, G., Norrmohammadi, A., Barfuss, M.H.J., Suen, M. & Schneeweiss, G.M. 2020. The new locally endemic genus Yazdana (Caryophyllaceae) and patterns of endemism highlight the high conservation priority of the poorly studied Shirkuh Mountains (central Iran). J. Syst. Evol. 58 ( 3 ): 339 – 353. https://doi.org/10.1111/jse.12575
dc.identifier.citedreferenceOvczinnikov, P.N. 1967. Novyj rod iz semejstva Gvozdichnyh Pamiro‐Alaya – Kuhitangia ( Kuhitangia Ovcz., gen. nov.) [A new genus of family Caryophyllaceae from Pamiro‐Alay – Kuhitangia ( Kuhitangia Ovcz., gen. nov.)]. Dokl. Akad. Nauk Tadzhiksk. S.S.R. 10 ( 7 ): 50 – 52. [in Russian]
dc.identifier.citedreferenceOvczinnikov, P.N. 1968. Flora Tadzhikskoi SSR, vol. 3, Orekhovye–Gvozdichnye. Leningrad: Izdatelstvo Nauka. [in Russian]
dc.identifier.citedreferenceOxelman, B., Lidén, M. & Berglund, D. 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Pl. Syst. Evol. 206: 393 – 410.
dc.identifier.citedreferencePirani, A., Joharchi, M.R. & Memariani, F. 2013. A new species of Acanthophyllum (Caryophyllaceae) from Iran. Phytotaxa 92: 20 – 24. https://doi.org/10.11646/phytotaxa.92.1.3
dc.identifier.citedreferencePirani, A. & Rabeler, R.K. 2017. Nomenclatural notes on Acanthophyllum (Caryophylleae, Caryophyllaceae). Phytotaxa 303: 197 – 198.
dc.identifier.citedreferencePirani, A., Zarre, S., Pfeil, B.E., Bertrand, Y.J.K., Assadi, M. & Oxelman, B. 2014. Molecular phylogeny of Acanthophyllum (Caryophyllaceae: Caryophylleae), with emphasis on infrageneric classification. Taxon 63: 592 – 607. https://doi.org/10.12705/633.39
dc.identifier.citedreferencePodlech, D. 1980. Neue und bemerkenswerte Caryophyllaceen aus Afghanistan (Beiträge zur Flora von Afghanistan XI). Mitt. Bot. Staatssamml. München 16: 529 – 546.
dc.identifier.citedreferencePopp, M. & Oxelman, B. 2001. Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Molec. Phylogen. Evol. 20: 474 – 481.
dc.identifier.citedreferencePopp, M. & Oxelman, B. 2004. Evolution of a RNA polymerase gene family in Silene (Caryophyllaceae) — Incomplete concerted evolution and topological congruence among paralogues. Syst. Biol. 53: 914 – 932. https://doi.org/10.1080/10635150490888840
dc.identifier.citedreferencePopp, M., Erixon, P., Eggens, F. & Oxelman, B. 2005. Origin and evolution of a circumpolar polyploid species complex in Silene (Caryophyllaceae) inferred from low copy nuclear RNA polymerase introns, rDNA, and chloroplast DNA. Syst. Bot. 30: 302 – 313.
dc.identifier.citedreferencePreobraschensky, G.A. 1920. Acanthophyllum transhyrcanum G. Preobr. Bot. Mater. Gerb. Glavn. Bot. Sada R.S.F.S.R. 1 ( 3 ): 1 – 3. [in Russian]
dc.identifier.citedreferenceRechinger, K.H. 1940. Plantae novae iranicae I. Repert. Spec. Nov. Regni Veg. 48: 33 – 48.
dc.identifier.citedreferenceRechinger, K.H. & Schiman‐Czeika, H. 1988. Diaphanoptera. Pp. 332 – 337 in: Rechinger, K.H. (ed.), Flora Iranica, vol. 163. Graz: Akademische Druck‐ u. Verlagsanstalt.
dc.identifier.citedreferenceSchiman‐Czeika, H. 1987. Notes on the capsule dehiscence in Acanthophyllum (Caryophyllaceae) and allied genera. Pl. Syst. Evol. 155: 67 – 69. https://doi.org/10.1007/BF00936289
dc.identifier.citedreferenceSchiman‐Czeika, H. 1988. Acanthophyllum. Pp. 253 – 329 in: Rechinger, K.H. (ed.), Flora Iranica, vol. 163. Graz: Akademische Druck‐ u. Verlagsanstalt.
dc.identifier.citedreferenceSchischkin, B.K. 1932. De quibusdam plantis novis Asiae mediae e familia Caryophyllacearum. Trudy Bot. Muz. 24: 38 – 41.
dc.identifier.citedreferenceSchischkin, B.K. 1936. Acanthophyllum. Pp. 781 – 802, 892–896 in: Komarov, V.L. & Shishkin, B.K. (eds.), Flora of the U.S.S.R., vol. 6. Moscow & Leningrad: Izdatel’stvo Akademii Nauk SSSR. [in Russian]
dc.identifier.citedreferenceStafleu, F. & Mennega, E.A. 1993. Taxonomic literature: A selective guide to botanical publications and collections with dates, commentaries and types, suppl. 2, Be–Bo. Regnum Vegetabile 130. Königstein: Koeltz Scientific Books.
dc.identifier.citedreferenceTakhtajan, A. 2009. Flowering plants, 2nd ed. Dordrecht: Springer. https://doi.org/10.1007/978-1-4020-9609-9
dc.identifier.citedreferenceTurland, N.J., Wiersema, J.H., Barrie, F.R., Greuter, W., Hawksworth, D.L., Herendeen, P.S., Knapp, S., Kusber, W.‐H., Li, D.‐Z., Marhold, K., May, T.W., McNeill, J., Monro, A.M., Prado, J., Price, M.J. & Smith, G.F. (eds.) 2018. International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code), adopted by the Nineteenth International Botanical Congress, Shenzhen, China, July 2017. Regnum Vegetabile 159. Glashütten: Koeltz Botanical Books. https://doi.org/10.12705/Code.2018
dc.identifier.citedreferenceValente, L.M., Savolainen, V. & Vargas, P. 2010. Unparalleled rates of species diversification in Europe. Proc. Roy. Soc. London, Ser. B, Biol. Sci. 277: 1489 – 1496. https://doi.org/10.1098/rspb.2009.2163
dc.identifier.citedreferenceWagenitz, G. 1960. Joseph Bornmüller. Willdenowia 2 ( 3 ): 343 – 360.
dc.identifier.citedreferenceBarkoudah, Y.I. 1962. A revision of Gypsophila, Bolanthus, Ankyropetalum and Phryna. Wentia 9: 1 – 203.
dc.identifier.citedreferenceBittrich, V. 1993. Caryophyllaceae. Pp. 206 – 236 in: Kubitzki, J., Rohwer, J.G. & Bittrich, V. (eds.), The families and genera of vascular plants, vol. 2. Berlin: Springer. https://doi.org/10.1007/978-3-662-02899-5_21
dc.identifier.citedreferenceBondarenko, O.N. 1971. Sem, Caryophyllaceae ‐ Gvozdichnye [Family Caryophyllaceae] (pro parte). Pp. 225 – 310 in: Vvedensky, A.I. & Kovalevskaja, S.S. (eds.), Conspectus florae Asiae Mediae, vol. 2. Tashkent: Editio Academiae Scientarum UzSSR. [in Russian].
dc.identifier.citedreferenceBornmüller, J. 1909. Saponaria Kermanensis Bornm. Nov. spec. sectionis Proteiniae e flora Persiae austro‐orientalis. Repert. Spec. Nov. Regni Veg. 6: 302 – 303.
dc.identifier.citedreferenceBuckler, E.S., Ippolito, A. & Holtsford, T.P. 1997. The evolution of ribosomal DNA divergent paralogues and phylogenetic implications. Genetics 145: 821 – 832.
dc.identifier.citedreferenceBunge, A. von 1867. Allochrusa. Pp. 559 – 560 in: Boissier, E. (ed.), Flora Orientalis, vol. 1. Basileae [Basel]: apud H. Georg. Genevae [Geneva]: apud Eumden. https://doi.org/10.5962/bhl.title.20323
dc.identifier.citedreferenceCzerepanov, S.K. 1981. Sosudistye Rasteniia SSSR. Leningrad: Nauka, Leningradskoe Otd‐nie. [in Russian]
dc.identifier.citedreferenceDarriba, D., Taboada, G.L., Doallo, R. & Posada, D. 2012. jModelTest 2: More models, new heuristics and parallel computing. Nature, Meth. 9: 772.
dc.identifier.citedreferenceDickoré, W.B., Schloeder, C., Jacobs, M., Spribille, T. & Freitag, H. 2013. Ochotonophila flava (Caryophyllaceae), a new species from central Afghanistan. Edinburgh J. Bot. 70 ( 3 ): 405 – 412.
dc.identifier.citedreferenceDoyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. Bot. Soc. Amer. 19: 11 – 15.
dc.identifier.citedreferenceEggens, F., Popp, M., Nepokroeff, M., Wagner, W.L. & Oxelman, B. 2007. The origin and number of introductions of the Hawaiian endemic Silene species (Caryophyllaceae). Amer. J. Bot. 94: 210 – 218.
dc.identifier.citedreferenceGhazanafar, S.A. 1986. Caryophyllaceae. Pp. 1 – 125 in: Nasir, E. & Ali, S.I. (eds.), Flora of Pakistan, vol. 175. Islamabad: Pakistan Agricultural Research Council.
dc.identifier.citedreferenceGolenkin, M. 1893. Verzeichniss der Arten der Gattung Acanthophyllum C.A. Meyer. Trudy Imp. S.‐Peterburgsk. Bot. Sada 13: 77 – 87.
dc.identifier.citedreferenceHernández‐Ledesma, P., Walter, G., Berendsohn, W.G., Borsch, T., Mering, S. von, Akhani, H., Arias, S., Castañeda‐Noa, I., Eggli, U., Eriksson, R., Flores‐Olvera, H., Fuentes‐Bazán, S., Kadereit, G., Klak, C., Korotkova, N., Nyffeler, R., Ocampo, G., Ochoterena, H., Oxelman, B., Rabeler, R.K., Sanchez, A., Schlumpberger, B.O. & Uotila, P. 2015. A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales. Willdenowia 45: 281 – 383. https://doi.org/10.3372/wi.45.45301
dc.identifier.citedreferenceHuelsenbeck, J.P. & Ronquist, F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754 – 755.
dc.identifier.citedreferenceIkonnikov, S.S. 1976. Notes on Caryophyllaceae, 3. On the genus Psammophiliella Ikonn. Novosti Sist. Vyssh. Rast. 13: 116 – 117. [in Russian]
dc.identifier.citedreferenceJoly, S., Starr, J.R., Lewis, W.H. & Bruneau, A. 2006. Polyploid and hybrid evolution in roses east of the Rocky Mountains. Amer. J. Bot. 93: 412 – 425.
dc.identifier.citedreferenceKiani, M., Zarghami, H., Memariani, F. & Tehranifar, A. 2013. In vitro propagation and conservation of Diaphanoptera khorasanica (Caryophyllaceae), a threatened endemic and potential ornamental species in northeast of Iran. J. Cell Molec. Res. 4: 89 – 96.
dc.identifier.citedreferenceLiu, J. & Schardl, C.L. 1994. A conserved sequence in internal transcribed spacer 1 of plant nuclear rRNA genes. Pl. Molec. Biol. 26: 775 – 778.
dc.identifier.citedreferenceMadhani, H., Rabeler, R., Pirani, A., Oxelman, B., Heubl, G. & Zarre, S. 2018. Untangling phylogenetic patterns and taxonomic confusion in tribe Caryophylleae (Caryophyllaceae) with special focus on generic boundaries. Taxon 67: 83 – 112.
dc.owningcollnameInterdisciplinary and Peer-Reviewed


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