Show simple item record

Genetic testing for inherited retinal degenerations: Triumphs and tribulations

dc.contributor.authorBranham, Kari
dc.contributor.authorSchlegel, Dana
dc.contributor.authorFahim, Abigail T.
dc.contributor.authorJayasundera, K. Thiran
dc.date.accessioned2020-10-01T23:28:52Z
dc.date.availableWITHHELD_12_MONTHS
dc.date.available2020-10-01T23:28:52Z
dc.date.issued2020-09
dc.identifier.citationBranham, Kari; Schlegel, Dana; Fahim, Abigail T.; Jayasundera, K. Thiran (2020). "Genetic testing for inherited retinal degenerations: Triumphs and tribulations." American Journal of Medical Genetics Part C: Seminars in Medical Genetics 184(3): 571-577.
dc.identifier.issn1552-4868
dc.identifier.issn1552-4876
dc.identifier.urihttps://hdl.handle.net/2027.42/162692
dc.description.abstractInherited retinal degenerations (IRDs) are a genotypically and phenotypically diverse group of conditions. Great strides have been made toward identifying the genetic basis for these conditions over the last 30 years—more than 270 different genes involved in syndromic and nonsyndromic forms of retinal dystrophies have now been identified. The identification of these genes and the improvement of clinical laboratory techniques have led to the identification of the genetic basis of disease in 56–76% of patients with IRDs through next generation sequencing and copy number variant analysis. Genetic testing is an essential part of clinical care for patients affected with IRDs and is required to confirm the diagnosis, understand the inheritance of the condition, and determine eligibility for gene‐specific treatments or clinical trials. Despite the success achieved in determining the genetic cause of these conditions, several challenges remain, which must be considered when providing genetic testing and genetic counseling to patients. For this reason, an integrated team of ophthalmic and genetic clinicians who are familiar with these challenges is necessary to provide optimal comprehensive care to these patients.
dc.publisherJohn Wiley & Sons, Inc.
dc.subject.othergenetic testing
dc.subject.otherretinitis pigmentosa
dc.subject.othergenetic counseling
dc.titleGenetic testing for inherited retinal degenerations: Triumphs and tribulations
dc.typeArticle
dc.rights.robotsIndexNoFollow
dc.subject.hlbsecondlevelHuman Genetics
dc.subject.hlbtoplevelHealth Sciences
dc.description.peerreviewedPeer Reviewed
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/162692/2/ajmgc31835.pdfen_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/162692/1/ajmgc31835_am.pdfen_US
dc.identifier.doi10.1002/ajmg.c.31835
dc.identifier.sourceAmerican Journal of Medical Genetics Part C: Seminars in Medical Genetics
dc.identifier.citedreferenceShah, M., Shanks, M., Packham, E., Williams, J., Haysmoore, J., MacLaren, R. E., … Downes, S. M. ( 2020 ). Next generation sequencing using phenotype‐based panels for genetic testing in inherited retinal diseases. Ophthalmic Genetics, 41 ( 4 ), 331 – 337. https://doi.org/10.1080/13816810.2020.1778736
dc.identifier.citedreferenceHarrison, M., Birch, S., Eden, M., Ramsden, S., Farragher, T., Payne, K., … Black, G. C. ( 2015 ). Variation in healthcare services for specialist genetic testing and implications for planning genetic services: The example of inherited retinal dystrophy in the English NHS. Journal of Community Genetics, 6 ( 2 ), 157 – 165. https://doi.org/10.1007/s12687-014-0210-4
dc.identifier.citedreferenceHuckfeldt, R. M., East, J. S., Stone, E. M., & Sohn, E. H. ( 2016 ). Phenotypic variation in a family with Pseudodominant Stargardt disease. JAMA Ophthalmology, 134 ( 5 ), 580 – 583. https://doi.org/10.1001/jamaophthalmol.2015.5471
dc.identifier.citedreferenceJones, K. D., Wheaton, D. K., Bowne, S. J., Sullivan, L. S., Birch, D. G., Chen, R., & Daiger, S. P. ( 2017 ). Next‐generation sequencing to solve complex inherited retinal dystrophy: A case series of multiple genes contributing to disease in extended families. Molecular Vision, 23, 470 – 481.
dc.identifier.citedreferenceLeroy, B. P., Kailasanathan, A., De Laey, J. J., Black, G. C., & Manson, F. D. ( 2007 ). Intrafamilial phenotypic variability in families with RDS mutations: Exclusion of ROM1 as a genetic modifier for those with retinitis pigmentosa. The British Journal of Ophthalmology, 91 ( 1 ), 89 – 93. https://doi.org/10.1136/bjo.2006.101915
dc.identifier.citedreferenceMaugeri, A., Klevering, B. J., Rohrschneider, K., Blankenagel, A., Brunner, H. G., Deutman, A. F., … Cremers, F. P. ( 2000 ). Mutations in the ABCA4 (ABCR) gene are the major cause of autosomal recessive cone‐rod dystrophy. American Journal of Human Genetics, 67 ( 4 ), 960 – 966. https://doi.org/10.1086/303079
dc.identifier.citedreferencePapageorgiou, E., McLean, R. J., & Gottlob, I. ( 2014 ). Nystagmus in childhood. Pediatrics and Neonatology, 55 ( 5 ), 341 – 351. https://doi.org/10.1016/j.pedneo.2014.02.007
dc.identifier.citedreferenceParrish, R. S., Garafalo, A. V., Ndifor, V., Goetz, K. E., Reeves, M. J., Yim, A., … Tumminia, S. J. ( 2016 ). Sample confirmation testing: A short tandem repeat‐based quality assurance and quality control procedure for the eyeGENE biorepository. Biopreservation and Biobanking, 14 ( 2 ), 149 – 155. https://doi.org/10.1089/bio.2015.0098
dc.identifier.citedreferencePontikos, N., Arno, G., Jurkute, N., Schiff, E., Ba‐Abbad, R., Malka, S., … Mahroo, O. A. ( 2020 ). Genetic basis of inherited retinal disease in a molecularly characterized cohort of more than 3000 families from the United Kingdom. Ophthalmology. https://doi.org/10.1016/j.ophtha.2020.04.008
dc.identifier.citedreferenceRivolta, C., McGee, T. L., Rio Frio, T., Jensen, R. V., Berson, E. L., & Dryja, T. P. ( 2006 ). Variation in retinitis pigmentosa‐11 (PRPF31 or RP11) gene expression between symptomatic and asymptomatic patients with dominant RP11 mutations. Human Mutation, 27 ( 7 ), 644 – 653. https://doi.org/10.1002/humu.20325
dc.identifier.citedreferenceRose, A. M., & Bhattacharya, S. S. ( 2016 ). Variant haploinsufficiency and phenotypic non‐penetrance in PRPF31‐associated retinitis pigmentosa. Clinical Genetics, 90 ( 2 ), 118 – 126. https://doi.org/10.1111/cge.12758
dc.identifier.citedreferenceRussell, S., Bennett, J., Wellman, J. A., Chung, D. C., Yu, Z. F., Tillman, A., … Maguire, A. M. ( 2017 ). Efficacy and safety of voretigene neparvovec (AAV2‐hRPE65v2) in patients with RPE65‐mediated inherited retinal dystrophy: A randomised, controlled, open‐label, phase 3 trial. Lancet, 390 ( 10097 ), 849 – 860. https://doi.org/10.1016/S0140-6736(17)31868-8
dc.identifier.citedreferenceShaberman, B., & Durham, T. ( 2019 ). The Foundation Fighting Blindness plays an essential and expansive role in driving genetic research for inherited retinal diseases. Genes (Basel), 10 ( 7 ), 511. https://doi.org/10.3390/genes10070511
dc.identifier.citedreferenceSharon, D., Ben‐Yosef, T., Goldenberg‐Cohen, N., Pras, E., Gradstein, L., Soudry, S., … Perlman, I. ( 2020 ). A nationwide genetic analysis of inherited retinal diseases in Israel as assessed by the Israeli inherited retinal disease consortium (IIRDC). Human Mutation, 41 ( 1 ), 140 – 149. https://doi.org/10.1002/humu.23903
dc.identifier.citedreferenceSohocki, M. M., Sullivan, L. S., Mintz‐Hittner, H. A., Birch, D., Heckenlively, J. R., Freund, C. L., … Daiger, S. P. ( 1998 ). A range of clinical phenotypes associated with mutations in CRX, a photoreceptor transcription‐factor gene. American Journal of Human Genetics, 63 ( 5 ), 1307 – 1315. https://doi.org/10.1086/302101
dc.identifier.citedreferenceStone, E. M., Aldave, A. J., Drack, A. V., Maccumber, M. W., Sheffield, V. C., Traboulsi, E., & Weleber, R. G. ( 2012 ). Recommendations for genetic testing of inherited eye diseases: Report of the American Academy of ophthalmology task force on genetic testing. Ophthalmology, 119 ( 11 ), 2408 – 2410. https://doi.org/10.1016/j.ophtha.2012.05.047
dc.identifier.citedreferenceStone, E. M., Andorf, J. L., Whitmore, S. S., DeLuca, A. P., Giacalone, J. C., Streb, L. M., … Tucker, B. A. ( 2017 ). Clinically focused molecular investigation of 1000 consecutive families with inherited retinal disease. Ophthalmology, 124 ( 9 ), 1314 – 1331. https://doi.org/10.1016/j.ophtha.2017.04.008
dc.identifier.citedreferenceSwaroop, A., Wang, Q. L., Wu, W., Cook, J., Coats, C., Xu, S., … Sieving, P. A. ( 1999 ). Leber congenital amaurosis caused by a homozygous mutation (R90W) in the homeodomain of the retinal transcription factor CRX: Direct evidence for the involvement of CRX in the development of photoreceptor function. Human Molecular Genetics, 8 ( 2 ), 299 – 305. https://doi.org/10.1093/hmg/8.2.299
dc.identifier.citedreferenceThompson, D. A., Iannaccone, A., Ali, R. R., Arshavsky, V. Y., Audo, I., Bainbridge, J. W. B., … The Monaciano Consortium. ( 2020 ). Advancing clinical trials for inherited retinal diseases: Recommendations from the second monaciano symposium. Translational Vision Science & Technology, 9 ( 7 ), 2 – 2. https://doi.org/10.1167/tvst.9.7.2
dc.identifier.citedreferenceWerdich, X. Q., Place, E. M., & Pierce, E. A. ( 2014 ). Systemic diseases associated with retinal dystrophies. Seminars in Ophthalmology, 29 ( 5–6 ), 319 – 328. https://doi.org/10.3109/08820538.2014.959202
dc.identifier.citedreferenceWhelan, L., Dockery, A., Wynne, N., Zhu, J., Stephenson, K., Silvestri, G., … Farrar, G. J. ( 2020 ). Findings from a genotyping study of over 1000 people with inherited retinal disorders in Ireland. Genes (Basel), 11 ( 1 ), 105. https://doi.org/10.3390/genes11010105
dc.identifier.citedreferenceZampaglione, E., Kinde, B., Place, E. M., Navarro‐Gomez, D., Maher, M., Jamshidi, F., … Bujakowska, K. M. ( 2020 ). Copy‐number variation contributes 9% of pathogenicity in the inherited retinal degenerations. Genetics in Medicine, 22 ( 6 ), 1079 – 1087. https://doi.org/10.1038/s41436-020-0759-8
dc.identifier.citedreferenceAdams, H. R., Mink, J. W., & University of Rochester Batten Center Study. ( 2013 ). Neurobehavioral features and natural history of juvenile neuronal ceroid lipofuscinosis (batten disease). Journal of Child Neurology, 28 ( 9 ), 1128 – 1136. https://doi.org/10.1177/0883073813494813
dc.identifier.citedreferenceBerger, W., Kloeckener‐Gruissem, B., & Neidhardt, J. ( 2010 ). The molecular basis of human retinal and vitreoretinal diseases. Progress in Retinal and Eye Research, 29 ( 5 ), 335 – 375. https://doi.org/10.1016/j.preteyeres.2010.03.004
dc.identifier.citedreferenceBirtel, J., Gliem, M., Hess, K., Birtel, T. H., Holz, F. G., Zechner, U., … Herrmann, P. ( 2020 ). Comprehensive Geno‐ and Phenotyping in a complex pedigree including four different inherited retinal dystrophies. Genes (Basel), 11 ( 2 ), 137. https://doi.org/10.3390/genes11020137
dc.identifier.citedreferenceBranham, K., Othman, M., Brumm, M., Karoukis, A. J., Atmaca‐Sonmez, P., Yashar, B. M., … Swaroop, A. ( 2012 ). Mutations in RPGR and RP2 account for 15% of males with simplex retinal degenerative disease. Investigative Ophthalmology & Visual Science, 53 ( 13 ), 8232 – 8237. https://doi.org/10.1167/iovs.12-11025
dc.identifier.citedreferenceCarss, K. J., Arno, G., Erwood, M., Stephens, J., Sanchis‐Juan, A., Hull, S., … Raymond, F. L. ( 2017 ). Comprehensive rare variant analysis via whole‐genome sequencing to determine the molecular pathology of inherited retinal disease. American Journal of Human Genetics, 100 ( 1 ), 75 – 90. https://doi.org/10.1016/j.ajhg.2016.12.003
dc.identifier.citedreferenceChurchill, J. D., Bowne, S. J., Sullivan, L. S., Lewis, R. A., Wheaton, D. K., Birch, D. G., … Daiger, S. P. ( 2013 ). Mutations in the X‐linked retinitis pigmentosa genes RPGR and RP2 found in 8.5% of families with a provisional diagnosis of autosomal dominant retinitis pigmentosa. Investigative Ophthalmology & Visual Science, 54 ( 2 ), 1411 – 1416. https://doi.org/10.1167/iovs.12-11541
dc.identifier.citedreferenceCiulla, T. A., Hussain, R. M., Berrocal, A. M., & Nagiel, A. ( 2020 ). Voretigene neparvovec‐rzyl for treatment of RPE65‐mediated inherited retinal diseases: A model for ocular gene therapy development. Expert Opinion on Biological Therapy, 20 ( 6 ), 565 – 578. https://doi.org/10.1080/14712598.2020.1740676
dc.identifier.citedreferenceDaiger, S. P., Bowne, S. J., & Sullivan, L. S. ( 2014 ). Genes and mutations causing autosomal dominant retinitis Pigmentosa. Cold Spring Harbor Perspectives in Medicine, 5 ( 10 ), a017129. https://doi.org/10.1101/cshperspect.a017129
dc.identifier.citedreferenceDaiger, S. P., Sullivan, L. S., & Bowne, S. J. ( 2013 ). Genes and mutations causing retinitis pigmentosa. Clinical Genetics, 84 ( 2 ), 132 – 141. https://doi.org/10.1111/cge.12203
dc.identifier.citedreferenceDryja, T. P., McGee, T. L., Hahn, L. B., Cowley, G. S., Olsson, J. E., Reichel, E., … Berson, E. L. ( 1990 ). Mutations within the rhodopsin gene in patients with autosomal dominant retinitis pigmentosa. The New England Journal of Medicine, 323 ( 19 ), 1302 – 1307. https://doi.org/10.1056/NEJM199011083231903
dc.identifier.citedreferenceEllingford, J. M., Horn, B., Campbell, C., Arno, G., Barton, S., Tate, C., … Black, G. C. M. ( 2018 ). Assessment of the incorporation of CNV surveillance into gene panel next‐generation sequencing testing for inherited retinal diseases. Journal of Medical Genetics, 55 ( 2 ), 114 – 121. https://doi.org/10.1136/jmedgenet-2017-104791
dc.identifier.citedreferenceErwin, D. J., LaMaire, C., Espana, A., Eble, T. N., & Dhar, S. U. ( 2020 ). Financial barriers in a county genetics clinic: Problems and solutions. Journal of Genetic Counseling, 29, 678 – 688. https://doi.org/10.1002/jgc4.1279
dc.identifier.citedreferenceForsythe, E., & Beales, P. L. ( 2013 ). Bardet‐Biedl syndrome. European Journal of Human Genetics, 21 ( 1 ), 8 – 13. https://doi.org/10.1038/ejhg.2012.115
dc.identifier.citedreferenceGoetz, K. E., Reeves, M. J., Tumminia, S. J., & Brooks, B. P. ( 2012 ). eyeGENE(R): A novel approach to combine clinical testing and researching genetic ocular disease. Current Opinion in Ophthalmology, 23 ( 5 ), 355 – 363. https://doi.org/10.1097/ICU.0b013e32835715c9
dc.identifier.citedreferenceHaim, M. ( 2002 ). Epidemiology of retinitis pigmentosa in Denmark. Acta Ophthalmologica Scandinavica, 80, 1 – 34. https://doi.org/10.1046/j.1395-3907.2002.00001.x
dc.owningcollnameInterdisciplinary and Peer-Reviewed


Files in this item

Show simple item record

Remediation of Harmful Language

The University of Michigan Library aims to describe library materials in a way that respects the people and communities who create, use, and are represented in our collections. Report harmful or offensive language in catalog records, finding aids, or elsewhere in our collections anonymously through our metadata feedback form. More information at Remediation of Harmful Language.

Accessibility

If you are unable to use this file in its current format, please select the Contact Us link and we can modify it to make it more accessible to you.