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Urinary extracellular vesicles: A position paper by the Urine Task Force of the International Society for Extracellular Vesicles

dc.contributor.authorErdbrügger, Uta
dc.contributor.authorBlijdorp, Charles J.
dc.contributor.authorBijnsdorp, Irene V.
dc.contributor.authorBorràs, Francesc E.
dc.contributor.authorBurger, Dylan
dc.contributor.authorBussolati, Benedetta
dc.contributor.authorByrd, James Brian
dc.contributor.authorClayton, Aled
dc.contributor.authorDear, James W.
dc.contributor.authorFalcón‐pérez, Juan M.
dc.contributor.authorGrange, Cristina
dc.contributor.authorHill, Andrew F.
dc.contributor.authorHolthöfer, Harry
dc.contributor.authorHoorn, Ewout J.
dc.contributor.authorJenster, Guido
dc.contributor.authorJimenez, Connie R.
dc.contributor.authorJunker, Kerstin
dc.contributor.authorKlein, John
dc.contributor.authorKnepper, Mark A.
dc.contributor.authorKoritzinsky, Erik H.
dc.contributor.authorLuther, James M.
dc.contributor.authorLenassi, Metka
dc.contributor.authorLeivo, Janne
dc.contributor.authorMertens, Inge
dc.contributor.authorMusante, Luca
dc.contributor.authorOeyen, Eline
dc.contributor.authorPuhka, Maija
dc.contributor.authorRoyen, Martin E.
dc.contributor.authorSánchez, Catherine
dc.contributor.authorSoekmadji, Carolina
dc.contributor.authorThongboonkerd, Visith
dc.contributor.authorSteijn, Volkert
dc.contributor.authorVerhaegh, Gerald
dc.contributor.authorWebber, Jason P.
dc.contributor.authorWitwer, Kenneth
dc.contributor.authorYuen, Peter S.T.
dc.contributor.authorZheng, Lei
dc.contributor.authorLlorente, Alicia
dc.contributor.authorMartens‐uzunova, Elena S.
dc.date.accessioned2021-06-02T21:08:47Z
dc.date.available2022-06-02 17:08:45en
dc.date.available2021-06-02T21:08:47Z
dc.date.issued2021-05
dc.identifier.citationErdbrügger, Uta ; Blijdorp, Charles J.; Bijnsdorp, Irene V.; Borràs, Francesc E. ; Burger, Dylan; Bussolati, Benedetta; Byrd, James Brian; Clayton, Aled; Dear, James W.; Falcón‐pérez, Juan M. ; Grange, Cristina; Hill, Andrew F.; Holthöfer, Harry ; Hoorn, Ewout J.; Jenster, Guido; Jimenez, Connie R.; Junker, Kerstin; Klein, John; Knepper, Mark A.; Koritzinsky, Erik H.; Luther, James M.; Lenassi, Metka; Leivo, Janne; Mertens, Inge; Musante, Luca; Oeyen, Eline; Puhka, Maija; Royen, Martin E.; Sánchez, Catherine ; Soekmadji, Carolina; Thongboonkerd, Visith; Steijn, Volkert; Verhaegh, Gerald; Webber, Jason P.; Witwer, Kenneth; Yuen, Peter S.T.; Zheng, Lei; Llorente, Alicia; Martens‐uzunova, Elena S. (2021). "Urinary extracellular vesicles: A position paper by the Urine Task Force of the International Society for Extracellular Vesicles." Journal of Extracellular Vesicles 10(7): n/a-n/a.
dc.identifier.issn2001-3078
dc.identifier.issn2001-3078
dc.identifier.urihttps://hdl.handle.net/2027.42/167823
dc.description.abstractUrine is commonly used for clinical diagnosis and biomedical research. The discovery of extracellular vesicles (EV) in urine opened a new fast- growing scientific field. In the last decade urinary extracellular vesicles (uEVs) were shown to mirror molecular processes as well as physiological and pathological conditions in kidney, urothelial and prostate tissue. Therefore, several methods to isolate and characterize uEVs have been developed. However, methodological aspects of EV separation and analysis, including normalization of results, need further optimization and standardization to foster scientific advances in uEV research and a subsequent successful translation into clinical practice. This position paper is written by the Urine Task Force of the Rigor and Standardization Subcommittee of ISEV consisting of nephrologists, urologists, cardiologists and biologists with active experience in uEV research. Our aim is to present the state of the art and identify challenges and gaps in current uEV- based analyses for clinical applications. Finally, recommendations for improved rigor, reproducibility and interoperability in uEV research are provided in order to facilitate advances in the field.
dc.publisherRegulatory Affairs Professionals Society
dc.publisherWiley Periodicals, Inc.
dc.subject.otherbiobank
dc.subject.otherbladder
dc.subject.otherextracellular vesicles
dc.subject.otherkidney
dc.subject.otherliquid biopsy
dc.subject.otherprostate
dc.subject.otherrigor and standardization
dc.subject.otherurine
dc.subject.otherbiomarkers
dc.titleUrinary extracellular vesicles: A position paper by the Urine Task Force of the International Society for Extracellular Vesicles
dc.typeArticle
dc.rights.robotsIndexNoFollow
dc.subject.hlbsecondlevelMedicine (General)
dc.subject.hlbtoplevelHealth Sciences
dc.description.peerreviewedPeer Reviewed
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/167823/1/jev212093_am.pdf
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/167823/2/jev212093.pdf
dc.identifier.doi10.1002/jev2.12093
dc.identifier.sourceJournal of Extracellular Vesicles
dc.identifier.citedreferenceRindler, M. J., Naik, S. S., Li, N., Hoops, T. C., & Peraldi, M. N. ( 1990 ). Uromodulin (Tamm- Horsfall glycoprotein/uromucoid) is a phosphatidylinositol- linked membrane protein. Journal of Biological Chemistry 265 ( 34 ), 20784 - 20789.
dc.identifier.citedreferenceSkotland, T., Hessvik, N. P., Sandvig, K., & Llorente, A. ( 2019 ). Exosomal lipid composition and the role of ether lipids and phosphoinositides in exosome biology. Journal of Lipid Research 60 ( 1 ), 9 - 18.
dc.identifier.citedreferenceSkotland, T., Sagini, K., Sandvig, K., & Llorente, A. ( 2020 ). An emerging focus on lipids in extracellular vesicles. Advanced Drug Delivery Reviews 159, 308- 321.
dc.identifier.citedreferenceSmith, J. T., Wunsch, B. H., Dogra, N., Ahsen, M. E., Lee, K., Yadav, K. K., Weil, R., Pereira, M. A., Patel, J. V., Duch, E. A., Papalia, J. M., Lofaro, M. F., Gupta, M., Tewari, A. K., Cordon- Cardo, C., Stolovitzky, G., & Gifford, S. M. ( 2018 ). Integrated nanoscale deterministic lateral displacement arrays for separation of extracellular vesicles from clinically- relevant volumes of biological samples. Lab on A Chip 18 ( 24 ), 3913 - 3925.
dc.identifier.citedreferenceSoekmadji, C., Li, B., Huang, Y., Wang, H., An, T., Liu, C., Pan, W., Chen, J., Cheung, L., Falcon- Perez, J. M., Gho, Y. S., Holthofer, H. B., Le, M. T. N., Marcilla, A., O’Driscoll, L., Shekari, F., Shen, T. L., Torrecilhas, A. C., Yan, X. - ¦ Zheng, L. ( 2020 ). The future of Extracellular Vesicles as Theranostics - an ISEV meeting report. Journal of Extracellular Vesicles 9 ( 1 ), 1809766.
dc.identifier.citedreferenceSole, C., Moline, T., Vidal, M., Ordi- Ros, J., & Cortes- Hernandez, J. ( 2019 ). An Exosomal Urinary miRNA Signature for Early Diagnosis of Renal Fibrosis in Lupus Nephritis. Cells 8 ( 8 ), 773.
dc.identifier.citedreferenceSonoda, H., Yokota- Ikeda, N., Oshikawa, S., Kanno, Y., Yoshinaga, K., Uchida, K., Ueda, Y., Kimiya, K., Uezono, S., Ueda, A., Ito, K., & Ikeda, M. ( 2009 ). Decreased abundance of urinary exosomal aquaporin- 1 in renal ischemia- reperfusion injury. American Journal of Physiology. Renal Physiology 297 ( 4 ), F1006 - 1016.
dc.identifier.citedreferenceSrinivasan, S., Yeri, A., Cheah, P. S., Chung, A., Danielson, K., De Hoff, P., Filant, J., Laurent, C. D., Laurent, L. D., Magee, R., Moeller, C., Murthy, V. L., Nejad, P., Paul, A., Rigoutsos, I., Rodosthenous, R., Shah, R. V., Simonson, B., To, C. - ¦ Laurent, L. C. ( 2019 ). Small RNA sequencing across diverse biofluids identifies optimal methods for exRNA isolation. Cell 177 ( 2 ), 446- 462 e416.
dc.identifier.citedreferenceStokman, M. F., Bijnsdorp, I. V., Schelfhorst, T., Pham, T. V., Piersma, S. R., Knol, J. C., Giles, R. H., Bongers, E., Knoers, N., Lilien, M. R., Jimenez, C. R., & Renkema, K. Y. ( 2019 ). Changes in the urinary extracellular vesicle proteome are associated with nephronophthisis- related ciliopathies. Journal of Proteomics 192, 27 - 36.
dc.identifier.citedreferenceStreet, J. M., Birkhoff, W., Menzies, R. I., Webb, D. J., Bailey, M. A., & Dear, J. W. ( 2011 ). Exosomal transmission of functional aquaporin 2 in kidney cortical collecting duct cells. Journal of Physiology 589 ( Pt 24 ), 6119 - 6127.
dc.identifier.citedreferenceStreet, J. M., Koritzinsky, E. H., Glispie, D. M., Star, R. A., & Yuen, P. S. ( 2017 ). Urine exosomes: An emerging trove of biomarkers. Advances in Clinical Chemistry 78: 103 - 122.
dc.identifier.citedreferenceSuarez, H., Gamez- Valero, A., Reyes, R., Lopez- Martin, S., Rodriguez, M. J., Carrascosa, J. L., Cabanas, C., Borras, F. E., & Yanez- Mo, M. ( 2017 ). A bead- assisted flow cytometry method for the semi- quantitative analysis of Extracellular Vesicles. Scientific Reports 7 ( 1 ), 11271.
dc.identifier.citedreferenceSun, A. L., Deng, J. T., Guan, G. J., Chen, S. H., Liu, Y. T., Cheng, J., Li, Z. W., Zhuang, X. H., Sun, F. D., & Deng, H. P. ( 2012 ). Dipeptidyl peptidase- IV is a potential molecular biomarker in diabetic kidney disease. Diabetes & vascular disease research: official journal of the International Society of Diabetes and Vascular Disease 9 ( 4 ), 301 - 308.
dc.identifier.citedreferenceSvenningsen, P., Sabaratnam, R., & Jensen, B. L. ( 2020 ). Urinary extracellular vesicles: Origin, role as intercellular messengers and biomarkers; efficient sorting and potential treatment options. Acta Physiologica (Oxford, England) 228 ( 1 ), E13346.
dc.identifier.citedreferenceTangtanatakul, P., Klinchanhom, S., Sodsai, P., Sutichet, T., Promjeen, C., Avihingsanon, Y., & Hirankarn, N. ( 2018 ). Down- regulation of let- 7a and miR- 21 in urine exosomes from lupus nephritis patients during disease flare. Asian Pacific Journal of Allergy and Immunology 37 ( 4 ), 189 - 197.
dc.identifier.citedreferenceTataruch- Weinert, D., Musante, L., Kretz, O., & Holthofer, H. ( 2016 ). Urinary extracellular vesicles for RNA extraction: Optimization of a protocol devoid of prokaryote contamination. Journal of Extracellular Vesicles 5, 30281.
dc.identifier.citedreferenceThery, C., Witwer, K. W., Aikawa, E., Alcaraz, M. J., Anderson, J. D., Andriantsitohaina, R., Antoniou, A., Arab, T., Archer, F., Atkin- Smith, G. K., Ayre, D. C., Bach, J. M., Bachurski, D., Baharvand, H., Balaj, L., Baldacchino, S., Bauer, N. N., Baxter, A. A., Bebawy, M. - ¦ Zuba- Surma, E. K. ( 2018 ). Minimal information for studies of extracellular vesicles 2018 (MISEV2018): A position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. Journal of Extracellular Vesicles 7 ( 1 ), 1535750.
dc.identifier.citedreferenceThomas, C. E., Sexton, W., Benson, K., Sutphen, R., & Koomen, J. ( 2010 ). Urine collection and processing for protein biomarker discovery and quantification. Cancer Epidemiology, Biomarkers & Prevention 19 ( 4 ), 953 - 959.
dc.identifier.citedreferenceThomas, M. E., Blaine, C., Dawnay, A., Devonald, M. A., Ftouh, S., Laing, C., Latchem, S., Lewington, A., Milford, D. V., & Ostermann, M. ( 2015 ). The definition of acute kidney injury and its use in practice. Kidney International 87 ( 1 ), 62 - 73.
dc.identifier.citedreferenceThomas, S., Hao, L., Ricke, W. A., & Li, L. ( 2016 ). Biomarker discovery in mass spectrometry- based urinary proteomics. Proteomics. Clinical applications 10 ( 4 ), 358 - 370.
dc.identifier.citedreferenceThongboonkerd, V., & Saetun, P. ( 2007 ). Bacterial overgrowth affects urinary proteome analysis: Recommendation for centrifugation, temperature, duration, and the use of preservatives during sample collection. Journal of Proteome Research 6 ( 11 ), 4173 - 4181.
dc.identifier.citedreferenceTian, Y., Gong, M., Hu, Y., Liu, H., Zhang, W., Zhang, M., Hu, X., Aubert, D., Zhu, S., Wu, L., & Yan, X. ( 2020 ). Quality and efficiency assessment of six extracellular vesicle isolation methods by nano- flow cytometry. Journal of Extracellular Vesicles 9 ( 1 ), 1697028.
dc.identifier.citedreferenceTipthara, P., & Thongboonkerd, V. ( 2016 ). Differential human urinary lipid profiles using various lipid- extraction protocols: MALDI- TOF and LIFT- TOF/TOF analyses. Scientific Reports 6, 33756.
dc.identifier.citedreferenceTrilok, G., & Draper, H. H. ( 1989 ). Effect of a high protein intake on acid- base balance in adult rats. Calcified Tissue International 44 ( 5 ), 339 - 342.
dc.identifier.citedreferenceTrilok, G., & Draper, H. H. ( 1989 ). Sources of protein- induced endogenous acid production and excretion by human adults. Calcified Tissue International 44 ( 5 ), 335 - 338.
dc.identifier.citedreferenceTurco, A. E., Lam, W., Rule, A. D., Denic, A., Lieske, J. C., Miller, V. M., Larson, J. J., Kremers, W. K., & Jayachandran, M. ( 2016 ). Specific renal parenchymal- derived urinary extracellular vesicles identify age- associated structural changes in living donor kidneys. Journal of Extracellular Vesicles 5, 29642.
dc.identifier.citedreferenceValadi, H., Ekstrom, K., Bossios, A., Sjostrand, M., Lee, J. J., & Lotvall, J. O. ( 2007 ). Exosome- mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nature Cell Biology 9 ( 6 ), 654 - 659.
dc.identifier.citedreferencevan der Lubbe, N., Jansen, P. M., Salih, M., Fenton, R. A., van den Meiracker, A. H., Danser, A. H., Zietse, R., & Hoorn, E. J. ( 2012 ). The phosphorylated sodium chloride cotransporter in urinary exosomes is superior to prostasin as a marker for aldosteronism. Hypertension 60 ( 3 ), 741 - 748.
dc.identifier.citedreferencevan Dongen, H. M., Masoumi, N., Witwer, K. W., & Pegtel, D. M. ( 2016 ). Extracellular vesicles exploit viral entry routes for cargo delivery. Microbiology and Molecular Biology Reviews 80 ( 2 ), 369 - 386.
dc.identifier.citedreferencevan Niel, G., D’Angelo, G., & Raposo, G. ( 2018 ). Shedding light on the cell biology of extracellular vesicles. Nature Reviews Molecular Cell Biology 19 ( 4 ), 213 - 228.
dc.identifier.citedreferenceVergauwen, G., Dhondt, B., Van Deun, J., De Smedt, E., Berx, G., Timmerman, E., Gevaert, K., Miinalainen, I., Cocquyt, V., Braems, G., Van den Broecke, R., Denys, H., De Wever, O., & Hendrix, A. ( 2017 ). Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research. Scientific Reports 7 ( 1 ), 2704.
dc.identifier.citedreferenceWachalska, M., Koppers- Lalic, D., van Eijndhoven, M., Pegtel, M., Geldof, A. A., Lipinska, A. D., van Moorselaar, R. J., & Bijnsdorp, I. V. ( 2016 ). Protein complexes in urine interfere with extracellular vesicle biomarker studies. Journal of Circulating Biomarkers 5, 4.
dc.identifier.citedreferenceWaikar, S. S., Sabbisetti, V. S., & Bonventre, J. V. ( 2010 ). Normalization of urinary biomarkers to creatinine during changes in glomerular filtration rate. Kidney International 78 ( 5 ), 486 - 494.
dc.identifier.citedreferenceWang, D., & Sun, W. ( 2014 ). Urinary extracellular microvesicles: Isolation methods and prospects for urinary proteome. Proteomics 14 ( 16 ), 1922 - 1932.
dc.identifier.citedreferenceWang, J., & Barr, M. M. ( 2016 ). Ciliary extracellular vesicles: Txt Msg Organelles. Cellular and Molecular Neurobiology 36 ( 3 ), 449 - 457.
dc.identifier.citedreferenceWang, S., Kojima, K., Mobley, J. A., & West, A. B. ( 2019 ). Proteomic analysis of urinary extracellular vesicles reveal biomarkers for neurologic disease. EBioMedicine 45: 351 - 361.
dc.identifier.citedreferenceWang, Y. T., Shi, T., Srivastava, S., Kagan, J., Liu, T., & Rodland, K. D. ( 2020 ). Proteomic analysis of exosomes for discovery of protein biomarkers for prostate and bladder cancer. Cancers (Basel) 12 ( 9 ), 2335.
dc.identifier.citedreferenceWelsh, J. A., Van Der Pol, E., Arkesteijn, G. J. A., Bremer, M., Brisson, A., Coumans, F., Dignat- George, F., Duggan, E., Ghiran, I., Giebel, B., Gorgens, A., Hendrix, A., Lacroix, R., Lannigan, J., Libregts, S., Lozano- Andres, E., Morales- Kastresana, A., Robert, S., De Rond, L. - ¦ Jones, J. C. ( 2020 ). MIFlowCyt- EV: A framework for standardized reporting of extracellular vesicle flow cytometry experiments. Journal of Extracellular Vesicles 9 ( 1 ), 1713526.
dc.identifier.citedreferenceWelton, J. L., Brennan, P., Gurney, M., Webber, J. P., Spary, L. K., Carton, D. G., Falcon- Perez, J. M., Walton, S. P., Mason, M. D., Tabi, Z., & Clayton, A. ( 2016 ). Proteomics analysis of vesicles isolated from plasma and urine of prostate cancer patients using a multiplex, aptamer- based protein array. Journal of Extracellular Vesicles 5, 31209.
dc.identifier.citedreferenceWelton, J. L., Khanna, S., Giles, P. J., Brennan, P., Brewis, I. A., Staffurth, J., Mason, M. D., & Clayton, A. ( 2010 ). Proteomic analysis of bladder cancer exosomes. Molecular & Cellular Proteomics: MCP 9 ( 6 ), 1324 - 1338.
dc.identifier.citedreferenceWiggins, R. C., Glatfelter, A., Kshirsagar, B., & Brukman, J. ( 1986 ). Procoagulant activity in normal human urine associated with subcellular particles. Kidney International 29 ( 2 ), 591 - 597.
dc.identifier.citedreferenceWiklander, O. P. B., Bostancioglu, R. B., Welsh, J. A., Zickler, A. M., Murke, F., Corso, G., Felldin, U., Hagey, D. W., Evertsson, B., Liang, X. M., Gustafsson, M. O., Mohammad, D. K., Wiek, C., Hanenberg, H., Bremer, M., Gupta, D., Bjornstedt, M., Giebel, B., Nordin, J. Z. - ¦ Gorgens, A. ( 2018 ). Systematic methodological evaluation of a multiplex bead- based flow cytometry assay for detection of extracellular vesicle surface signatures. Frontiers in Immunology 9, 1326.
dc.identifier.citedreferenceWilliams, C., Palviainen, M., Reichardt, N. C., Siljander, P. R., & Falcon- Perez, J. M. ( 2019 ). Metabolomics applied to the study of extracellular vesicles. Metabolites 9 ( 11 ), 276.
dc.identifier.citedreferenceWilliams, C., Pazos, R., Royo, F., Gonzalez, E., Roura- Ferrer, M., Martinez, A., Gamiz, J., Reichardt, N. C., & Falcon- Perez, J. M. ( 2019 ). Assessing the role of surface glycans of extracellular vesicles on cellular uptake. Scientific Reports 9 ( 1 ), 11920.
dc.identifier.citedreferenceWilliams, C., Royo, F., Aizpurua- Olaizola, O., Pazos, R., Boons, G. J., Reichardt, N. C., & Falcon- Perez, J. M. ( 2018 ). Glycosylation of extracellular vesicles: Current knowledge, tools and clinical perspectives. Journal of Extracellular Vesicles 7 ( 1 ), 1442985.
dc.identifier.citedreferenceWilliams, T. L., Bastos, C., Faria, N., & Karet Frankl, F. E. ( 2020 ). Making urinary extracellular vesicles a clinically tractable source of biomarkers for inherited tubulopathies using a small volume precipitation method: Proof of concept. Journal of Nephrology 33 ( 2 ), 383 - 386.
dc.identifier.citedreferenceWitwer, K. W., Buzas, E. I., Bemis, L. T., Bora, A., Lasser, C., Lotvall, J., Nolte- - t Hoen, E. N., Piper, M. G., Sivaraman, S., Skog, J., Thery, C., Wauben, M. H., & Hochberg, F. ( 2013 ). Standardization of sample collection, isolation and analysis methods in extracellular vesicle research. Journal of Extracellular Vesicles 2 ( 1 ),
dc.identifier.citedreferenceWolley, M. J., Wu, A., Xu, S., Gordon, R. D., Fenton, R. A., & Stowasser, M. ( 2017 ). In primary aldosteronism, mineralocorticoids influence exosomal sodium- chloride cotransporter abundance. Journal of the American Society of Nephrology 28 ( 1 ), 56 - 63.
dc.identifier.citedreferenceWoo, H. K., Sunkara, V., Park, J., Kim, T. H., Han, J. R., Kim, C. J., Choi, H. I., Kim, Y. K., & Cho, Y. K. ( 2017 ). Exodisc for Rapid, size- selective, and efficient isolation and analysis of nanoscale extracellular vesicles from biological samples. ACS Nano 11 ( 2 ), 1360 - 1370.
dc.identifier.citedreferenceWu, Z., Bagarolo, G. I., Thoroe- Boveleth, S., & Jankowski, J. ( 2020 ). - Lipidomics- : Mass spectrometric and chemometric analyses of lipids. Advanced Drug Delivery Reviews, 159, 294 - 307.
dc.identifier.citedreferenceXu, X., Barreiro, K., Musante, L., Kretz, O., Lin, H., Zou, H., Huber, T. B., & Holthofer, H. ( 2019 ). Management of Tamm- Horsfall protein for reliable urinary analytics. Proteomics. Clinical applications 13 ( 6 ), E1900018.
dc.identifier.citedreferenceYaghobee, S., Bayani, M., Samiel, N., & Jahedmanesh, N. ( 2015 ). What are nanobacteria? Journal Biotechnology & Biotechnological Equipment 29 ( 5 ), 826 - 833
dc.identifier.citedreferenceYamamoto, C. M., Murakami, T., Oakes, M. L., Mitsuhashi, M., Kelly, C., Henry, R. R., & Sharma, K. ( 2018 ). Uromodulin mRNA from urinary extracellular vesicles correlate to kidney function decline in type 2 diabetes mellitus. American Journal of Nephrology 47 ( 5 ), 283 - 291.
dc.identifier.citedreferenceYasui, T., Yanagida, T., Ito, S., Konakade, Y., Takeshita, D., Naganawa, T., Nagashima, K., Shimada, T., Kaji, N., Nakamura, Y., Thiodorus, I. A., He, Y., Rahong, S., Kanai, M., Yukawa, H., Ochiya, T., Kawai, T., & Baba, Y. ( 2017 ). Unveiling massive numbers of cancer- related urinary- microRNA candidates via nanowires. Science Advances 3 ( 12 ), E1701133.
dc.identifier.citedreferenceYoo, J. Y., Rho, M., You, Y. A., Kwon, E. J., Kim, M. H., Kym, S., Jee, Y. K., Kim, Y. K., & Kim, Y. J. ( 2016 ). 16S rRNA gene- based metagenomic analysis reveals differences in bacteria- derived extracellular vesicles in the urine of pregnant and non- pregnant women. Experimental & Molecular Medicine 48, E208.
dc.identifier.citedreferenceYuana, Y., Bertina, R. M., & Osanto, S. ( 2011 ). Pre- analytical and analytical issues in the analysis of blood microparticles. Thrombosis and Haemostasis 105 ( 3 ), 396 - 408.
dc.identifier.citedreferenceYuana, Y., Boing, A. N., Grootemaat, A. E., van der Pol, E., Hau, C. M., Cizmar, P., Buhr, E., Sturk, A., & Nieuwland, R. ( 2015 ). Handling and storage of human body fluids for analysis of extracellular vesicles. Journal of Extracellular Vesicles 4, 29260.
dc.identifier.citedreferenceZaichick, V. ( 2014 ). The prostatic urethra as a Venturi effect urine- jet pump to drain prostatic fluid. Medical Hypotheses 83 ( 1 ), 65 - 68.
dc.identifier.citedreferenceZhan, Y., Du, L. T., Wang, L. S., Jiang, X. M., Zhang, S. J., Li, J., Yan, K. Q., Duan, W. L., Zhao, Y. H., Wang, L. L., Wang, Y. S., & Wang, C. X. ( 2018 ). Expression signatures of exosomal long non- coding RNAs in urine serve as novel non- invasive biomarkers for diagnosis and recurrence prediction of bladder cancer. Molecular Cancer 17 ( 1 ), 142.
dc.identifier.citedreferenceZhao, Y., Chen, K., Li, H., & Wu, H. ( 2017 ). Effect of pH on the isolation of urinary exosome. International Urology and Nephrology 49 ( 1 ), 165 - 169.
dc.identifier.citedreferenceZhou, H., Yuen, P. S., Pisitkun, T., Gonzales, P. A., Yasuda, H., Dear, J. W., Gross, P., Knepper, M. A., & Star, R. A. ( 2006 ). Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. Kidney International 69 ( 8 ), 1471 - 1476.
dc.identifier.citedreferenceZhu, C., Li, L., Wang, Z., Irfan, M., & Qu, F. ( 2020 ). Recent advances of aptasensors for exosomes detection. Biosensors & Bioelectronics 160, 112213.
dc.identifier.citedreferenceZubiri, I., Posada- Ayala, M., Sanz- Maroto, A., Calvo, E., Martin- Lorenzo, M., Gonzalez- Calero, L., de la Cuesta, F., Lopez, J. A., Fernandez- Fernandez, B., Ortiz, A., Vivanco, F., & Alvarez- Llamas, G. ( 2014 ). Diabetic nephropathy induces changes in the proteome of human urinary exosomes as revealed by label- free comparative analysis. Journal of Proteomics 96, 92 - 102.
dc.identifier.citedreferenceZullig, T., & Kofeler, H. C. ( 2021 ). High resolution mass spectrometry in lipidomics. Mass Spectrometry Reviews 40 ( 3 ), 162 - 176.
dc.identifier.citedreferenceAbe, H., Sakurai, A., Ono, H., Hayashi, S., Yoshimoto, S., Ochi, A., Ueda, S., Nishimura, K., Shibata, E., Tamaki, M., Kishi, F., Kishi, S., Murakami, T., Nagai, K., & Doi, T. ( 2018 ). Urinary exosomal mRNA of WT1 as diagnostic and prognostic biomarker for diabetic nephropathy. Journal of Medical Investigation 65 ( 3- 4 ), 208 - 215.
dc.identifier.citedreferenceAdedeji, A. O., Pourmohamad, T., Chen, Y., Burkey, J., Betts, C. J., Bickerton, S. J., Sonee, M., & McDuffie, J. E. ( 2019 ). Investigating the value of urine volume, creatinine, and cystatin C for urinary biomarkers normalization for drug development studies. International Journal of Toxicology 38 ( 1 ), 12 - 22.
dc.identifier.citedreferenceAlvarez, M. L., Khosroheidari, M., Ravi, R. K., & DiStefano, J. K. ( 2012 ). Comparison of protein, microRNA, and mRNA yields using different methods of urinary exosome isolation for the discovery of kidney disease biomarkers. Kidney International 82 ( 9 ), 1024 - 1032.
dc.identifier.citedreferenceAmmerlaan, W., Trezzi, J. P., Mathay, C., Hiller, K., & Betsou, F. ( 2014 ). Method validation for preparing urine samples for downstream proteomic and metabolomic applications. Biopreserv Biobank 12 ( 5 ), 351 - 357.
dc.identifier.citedreferenceArmstrong, D. A., Dessaint, J. A., Ringelberg, C. S., Hazlett, H. F., Howard, L., Abdalla, M. A. K., Barnaby, R. L., Stanton, B. A., Cervinski, M. A., & Ashare, A. ( 2018 ). Pre- analytical handling conditions and small RNA recovery from urine for miRNA profiling. The Journal of Molecular Diagnostics 20 ( 5 ), 565 - 571.
dc.identifier.citedreferenceAvela, H. F., & Siren, H. ( 2020 ). Advances in lipidomics. Clinica Chimica Acta 510, 123 - 141.
dc.identifier.citedreferenceBaj- Krzyworzeka, M., Szatanek, R., Weglarczyk, K., Baran, J., Urbanowicz, B., Branski, P., Ratajczak, M. Z., & Zembala, M. ( 2006 ). Tumour- derived microvesicles carry several surface determinants and mRNA of tumour cells and transfer some of these determinants to monocytes. Cancer Immunology, Immunotherapy 55 ( 7 ), 808 - 818.
dc.identifier.citedreferenceBarreiro, K., Dwivedi, O. P., Leparc, G., Rolser, M., Delic, D., Forsblom, C., Groop, P. H., Groop, L., Huber, T. B., Puhka, M., & Holthofer, H. ( 2020 ). Comparison of urinary extracellular vesicle isolation methods for transcriptomic biomarker research in diabetic kidney disease. Journal of Extracellular Vesicles 10 ( 2 ), E12038.
dc.identifier.citedreferenceBarreiro, K., Dwivedi, O. P., Leparc, G., Rolser, M., Delic, D., Forsblom, C., Groop, P. H, Groop, L., Huber, T. B, Puhka, M., & Holthofer, H. ( 2020 ). Comparison of urinary extracellular vesicle isolation methods for transcriptomic biomarker research in diabetic kidney disease. Journal of Extracellular Vesicles 10 ( 2 ), e12038.
dc.identifier.citedreferenceBarreiro, K., & Holthofer, H. ( 2017 ). Urinary extracellular vesicles. A promising shortcut to novel biomarker discoveries. Cell and Tissue Research 369 ( 1 ), 217 - 227.
dc.identifier.citedreferenceBarreiro, K., Huber, T. B., & Holthofer, H. ( 2020 ). Isolating urinary extracellular vesicles as biomarkers for diabetic disease. Methods in Molecular Biology 2067, 175 - 188.
dc.identifier.citedreferenceBarutta, F., Tricarico, M., Corbelli, A., Annaratone, L., Pinach, S., Grimaldi, S., Bruno, G., Cimino, D., Taverna, D., Deregibus, M. C., Rastaldi, M. P., Perin, P. C., & Gruden, G. ( 2013 ). Urinary exosomal microRNAs in incipient diabetic nephropathy. PLoS One 8 ( 11 ), E73798.
dc.identifier.citedreferenceBazzell, B. G., Rainey, W. E., Auchus, R. J., Zocco, D., Bruttini, M., Hummel, S. L., & Byrd, J. B. ( 2018 ). Human urinary mRNA as a biomarker of cardiovascular disease. Circulation, Genomic and Precision Medicine 11 ( 9 ), E002213.
dc.identifier.citedreferenceBetsou, F., Lehmann, S., Ashton, G., Barnes, M., Benson, E. E., Coppola, D., DeSouza, Y., Eliason, J., Glazer, B., Guadagni, F., Harding, K., Horsfall, D. J., Kleeberger, C., Nanni, U., Prasad, A., Shea, K., Skubitz, A., Somiari, S., Gunter, E. & B. International Society for and S. Environmental Repositories Working Group on Biospecimen ( 2010 ). Standard preanalytical coding for biospecimens: Defining the sample PREanalytical code. Cancer Epidemiology, Biomarkers & Prevention 19 ( 4 ), 1004 - 1011.
dc.identifier.citedreferenceBijnsdorp, I. V., Geldof, A. A., Lavaei, M., Piersma, S. R., van Moorselaar, R. J., & Jimenez, C. R. ( 2013 ). Exosomal ITGA3 interferes with non- cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients. Journal of Extracellular Vesicles 2 ( 1 ), 22097
dc.identifier.citedreferenceBijnsdorp, I. V., Maxouri, O., Kardar, A., Schelfhorst, T., Piersma, S. R., Pham, T. V., Vis, A., van Moorselaar, R. J., & Jimenez, C. R. ( 2017 ). Feasibility of urinary extracellular vesicle proteome profiling using a robust and simple, clinically applicable isolation method. Journal of Extracellular Vesicles 6 ( 1 ), 1313091.
dc.identifier.citedreferenceBlijdorp, C. J., & Hoorn, E. J. ( 2019 ). Urinary extracellular vesicles: The mothership connection. American Journal of Physiology. Renal Physiology 317 ( 3 ), F648 - f649.
dc.identifier.citedreferenceCiftcioglu, N., Bjorklund, M., Kuorikoski, K., Bergstrom, K., & Kajander, E. O. ( 1999 ). Nanobacteria: An infectious cause for kidney stone formation. Kidney International 56 ( 5 ), 1893 - 1898.
dc.identifier.citedreferenceBlijdorp, C. J., Tutakhel, O. A. Z., Hartjes, T. A., van den Bosch, T. T. P. P., van Heugten, M. H., Rigalli, J. P., Willemsen, R., Musterd, U., Barros, E. R., Carles- Fontana, R., Carvajal, C. A., Arntz, O. J., van de Loo, F. A. J., Jenster, G., Clahsen- van Groningen, M. C., Gallardo, C. A. C., Severs, D., Fenton, R. A., van Royen, M. E. - ¦ Hoorn, E. J. ( 2021 ). Comparing approaches to normalize, quantify, and characterize urinary extracellular vesicles. Journal of the American Society of Nephrology 32 ( 5 ): 1210 - 1226.
dc.identifier.citedreferenceBoulestreau, J., Maumus, M., Rozier, P., Jorgensen, C., & Noel, D. ( 2020 ). Mesenchymal stem cell derived extracellular vesicles in aging. Frontiers in Cell and Developmental Biology 8, 107.
dc.identifier.citedreferenceBourderioux, M., Nguyen- Khoa, T., Chhuon, C., Jeanson, L., Tondelier, D., Walczak, M., Ollero, M., Bekri, S., Knebelmann, B., Escudier, E., Escudier, B., Edelman, A., & Guerrera, I. C. ( 2015 ). A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients. Journal of Proteome Research 14 ( 1 ), 567 - 577.
dc.identifier.citedreferenceBoyd, C., Wood, K., Whitaker, D., Ashorobi, O., Harvey, L., Oster, R., Holmes, R. P., & Assimos, D. G. ( 2018 ). Accuracy in 24- hour Urine Collection at a Tertiary Center. Reviews in Urology 20 ( 3 ), 119 - 124.
dc.identifier.citedreferenceBryant, R. J., Pawlowski, T., Catto, J. W., Marsden, G., Vessella, R. L., Rhees, B., Kuslich, C., Visakorpi, T., & Hamdy, F. C. ( 2012 ). Changes in circulating microRNA levels associated with prostate cancer. British Journal of Cancer 106 ( 4 ), 768 - 774.
dc.identifier.citedreferenceBryzgunova, O. E., Zaripov, M. M., Skvortsova, T. E., Lekchnov, E. A., Grigor’eva, A. E., Zaporozhchenko, I. A., Morozkin, E. S., Ryabchikova, E. I., Yurchenko, Y. B., Voitsitskiy, V. E., & Laktionov, P. P. ( 2016 ). Comparative study of extracellular vesicles from the urine of healthy individuals and prostate cancer patients. PLoS One 11 ( 6 ), E0157566.
dc.identifier.citedreferenceBunjevac, A., Gabaj, N. N., Miler, M., & Horvat, A. ( 2018 ). Preanalytics of urine sediment examination: Effect of relative centrifugal force, tube type, volume of sample and supernatant removal. Biochemia Medica 28 ( 1 ), 010707.
dc.identifier.citedreferenceBurbidge, K., Zwikelmaier, V., Cook, B., Long, M. M., Balva, B., Lonigro, M., Ispas, G., Rademacher, D. J., & Campbell, E. M. ( 2020 ). Cargo and cell- specific differences in extracellular vesicle populations identified by multiplexed immunofluorescent analysis. Journal of Extracellular Vesicles 9 ( 1 ), 1789326.
dc.identifier.citedreferenceCampos- Silva, C., Suarez, H., Jara- Acevedo, R., Linares- Espinos, E., Martinez- Pineiro, L., Yanez- Mo, M., & Vales- Gomez, M. ( 2019 ). High sensitivity detection of extracellular vesicles immune- captured from urine by conventional flow cytometry. Scientific Reports 9 ( 1 ), 2042.
dc.identifier.citedreferenceCarreras- Planella, L., Cucchiari, D., Canas, L., Juega, J., Franquesa, M., Bonet, J., Revuelta, I., Diekmann, F., Taco, O., Lauzurica, R., & Borras, F. E. ( 2020 ). Urinary vitronectin identifies patients with high levels of fibrosis in kidney grafts. Journal of Nephrology. https://doi.org/10.1007/s40620-020-00886-y
dc.identifier.citedreferenceCarreras- Planella, L., Juega, J., Taco, O., Canas, L., Franquesa, M., Lauzurica, R., & Borras, F. E. ( 2020 ). Proteomic characterization of urinary extracellular vesicles from kidney- transplanted patients treated with calcineurin inhibitors. International Journal of Molecular Sciences 21 ( 20 ), 7569.
dc.identifier.citedreferenceCha, J. M., Shin, E. K., Sung, J. H., Moon, G. J., Kim, E. H., Cho, Y. H., Park, H. D., Bae, H., Kim, J., & Bang, O. Y. ( 2018 ). Efficient scalable production of therapeutic microvesicles derived from human mesenchymal stem cells. Scientific Reports 8 ( 1 ), 1171.
dc.identifier.citedreferenceCheah, S., Dee, S., Cole, A., Matzke, L., O’Donoghue, S., & Watson, P. H. ( 2012 ). An online tool for improving biospecimen data element reporting. Biopreserv Biobank 10 ( 6 ), 501 - 510.
dc.identifier.citedreferenceChen, C. L., Lai, Y. F., Tang, P., Chien, K. Y., Yu, J. S., Tsai, C. H., Chen, H. W., Wu, C. C., Chung, T., Hsu, C. W., Chen, C. D., Chang, Y. S., Chang, P. L., & Chen, Y. T. ( 2012 ). Comparative and targeted proteomic analyses of urinary microparticles from bladder cancer and hernia patients. Journal of Proteome Research 11 ( 12 ), 5611 - 5629.
dc.identifier.citedreferenceCheng, L., Sun, X., Scicluna, B. J., Coleman, B. M., & Hill, A. F. ( 2014 ). Characterization and deep sequencing analysis of exosomal and non- exosomal miRNA in human urine. Kidney International 86 ( 2 ), 433 - 444.
dc.identifier.citedreferenceCheng, Y., Wang, X., Yang, J., Duan, X., Yao, Y., Shi, X., Chen, Z., Fan, Z., Liu, X., Qin, S., Tang, X., & Zhang, C. ( 2012 ). A translational study of urine miRNAs in acute myocardial infarction. Journal of Molecular and Cellular Cardiology 53 ( 5 ), 668 - 676.
dc.identifier.citedreferenceCheng, Y., Zeng, Q., Han, Q., & Xia, W. ( 2019 ). Effect of pH, temperature and freezing- thawing on quantity changes and cellular uptake of exosomes. Protein Cell 10 ( 4 ), 295 - 299.
dc.identifier.citedreferenceCheruvanky, A., Zhou, H., Pisitkun, T., Kopp, J. B., Knepper, M. A., Yuen, P. S. T., & Star, R. A. ( 2007 ). Rapid isolation of urinary exosomal biomarkers using a nanomembrane ultrafiltration concentrator. American Journal of Physiology- Renal Physiology 292 ( 5 ), F1657 - F1661.
dc.identifier.citedreferenceChiriaco, M. S., Bianco, M., Nigro, A., Primiceri, E., Ferrara, F., Romano, A., Quattrini, A., Furlan, R., Arima, V., & Maruccio, G. ( 2018 ). Lab- on- chip for exosomes and microvesicles detection and characterization. Sensors (Basel) 18 ( 10 ), 3175.
dc.identifier.citedreferenceChun- Yan, L., Zi- Yi, Z., Tian- Lin, Y., Yi- Li, W., Bao, L., Jiao, L., & Wei- Jun, D. ( 2018 ). Liquid biopsy biomarkers of renal interstitial fibrosis based on urinary exosome. Experimental and Molecular Pathology 105 ( 2 ), 223 - 228.
dc.identifier.citedreferenceClayton, A., Boilard, E., Buzas, E. I., Cheng, L., Falcon- Perez, J. M., Gardiner, C., Gustafson, D., Gualerzi, A., Hendrix, A., Hoffman, A., Jones, J., Lasser, C., Lawson, C., Lenassi, M., Nazarenko, I., O’Driscoll, L., Pink, R., Siljander, P. R., Soekmadji, C. - ¦ Nieuwland, R. ( 2019 ). Considerations towards a roadmap for collection, handling and storage of blood extracellular vesicles. Journal of Extracellular Vesicles 8 ( 1 ), 1647027.
dc.identifier.citedreferenceClos- Garcia, M., Loizaga- Iriarte, A., Zuniga- Garcia, P., Sanchez- Mosquera, P., Cortazar, A. R., Gonzalez, E., Torrano, V., Alonso, C., Perez- Cormenzana, M., Ugalde- Olano, A., Lacasa- Viscasillas, I., Castro, A., Royo, F., Unda, M., Carracedo, A., & Falcon- Perez, J. M. ( 2018 ). Metabolic alterations in urine extracellular vesicles are associated to prostate cancer pathogenesis and progression. Journal of Extracellular Vesicles 7 ( 1 ), 1470442.
dc.identifier.citedreferenceColombo, M., Moita, C., van Niel, G., Kowal, J., Vigneron, J., Benaroch, P., Manel, N., Moita, L. F., Théry, C., & Raposo, G. ( 2013 ). Analysis of ESCRT functions in exosome biogenesis, composition and secretion highlights the heterogeneity of extracellular vesicles. Journal of Cell Science 126 ( Pt 24 ), 5553 - 5565.
dc.identifier.citedreferenceConde- Vancells, J., Rodriguez- Suarez, E., Gonzalez, E., Berisa, A., Gil, D., Embade, N., Valle, M., Luka, Z., Elortza, F., Wagner, C., Lu, S. C., Mato, J. M., & Falcon- Perez, M. ( 2010 ). Candidate biomarkers in exosome- like vesicles purified from rat and mouse urine samples. Proteomics. Clinical applications 4 ( 4 ), 416 - 425.
dc.identifier.citedreferenceEV TRACK Consortium, Van Deun, J., Mestdagh, P., Agostinis, P., Akay, O., Anand, S., Anckaert, J., Martinez, Z. A., Baetens, T., Beghein, E., Bertier, L., Berx, G., Boere, J., Boukouris, S., Bremer, M., Buschmann, D., Byrd, J. B., Casert, C., Cheng, L. - ¦ Hendrix, A. ( 2017 ). EV- TRACK: Transparent reporting and centralizing knowledge in extracellular vesicle research. Nature Methods 14 ( 3 ), 228 - 232.
dc.identifier.citedreferenceCorbetta, S., Raimondo, F., Tedeschi, S., Syren, M. L., Rebora, P., Savoia, A., Baldi, L., Bettinelli, A., & Pitto, M. ( 2015 ). Urinary exosomes in the diagnosis of Gitelman and Bartter syndromes. Nephrology, Dialysis, Transplantation 30 ( 4 ), 621 - 630.
dc.identifier.citedreferenceCoughlan, C., Bruce, K. D., Burgy, O., Boyd, T. D., Michel, C. R., Garcia- Perez, J. E., Adame, V., Anton, P., Bettcher, B. M., Chial, H. J., Konigshoff, M., Hsieh, E. W. Y., Graner, M., & Potter, H. ( 2020 ). Exosome isolation by ultracentrifugation and precipitation and techniques for downstream analyses. Current Protocols in Cell Biology 88 ( 1 ), E110.
dc.identifier.citedreferenceCoumans, F. A., van der Pol, E., Boing, A. N., Hajji, N., Sturk, G., van Leeuwen, T. G., & Nieuwland, R. ( 2014 ). Reproducible extracellular vesicle size and concentration determination with tunable resistive pulse sensing. Journal of Extracellular Vesicles 3, 25922.
dc.identifier.citedreferenceCoumans, F. A. W., Brisson, A. R., Buzas, E. I., Dignat- George, F., Drees, E. E. E., El- Andaloussi, S., Emanueli, C., Gasecka, A., Hendrix, A., Hill, A. F., Lacroix, R., Lee, Y., van Leeuwen, T. G., Mackman, N., Mager, I., Nolan, J. P., van der Pol, E., Pegtel, D. M., Sahoo, S. - ¦ Nieuwland, R. ( 2017 ). Methodological guidelines to study extracellular vesicles. Circulation Research 120 ( 10 ), 1632 - 1648.
dc.identifier.citedreferenceDaaboul, G. G., Gagni, P., Benussi, L., Bettotti, P., Ciani, M., Cretich, M., Freedman, D. S., Ghidoni, R., Ozkumur, A. Y., Piotto, C., Prosperi, D., Santini, B., Unlu, M. S., & Chiari, M. ( 2016 ). Digital detection of exosomes by interferometric imaging. Scientific Reports 6, 37246.
dc.identifier.citedreferenceDecramer, S., Gonzalez de Peredo, A., Breuil, B., Mischak, H., Monsarrat, B., Bascands, J. L., & Schanstra, J. P. ( 2008 ). Urine in clinical proteomics. Molecular and Cellular Proteomics 7 ( 10 ), 1850 - 1862.
dc.identifier.citedreferenceDel Boccio, P., Raimondo, F., Pieragostino, D., Morosi, L., Cozzi, G., Sacchetta, P., Magni, F., Pitto, M., & Urbani, A. ( 2012 ). A hyphenated microLC- Q- TOF- MS platform for exosomal lipidomics investigations: Application to RCC urinary exosomes. Electrophoresis 33 ( 4 ), 689 - 696.
dc.identifier.citedreferenceDelic, D., Eisele, C., Schmid, R., Baum, P., Wiech, F., Gerl, M., Zimdahl, H., Pullen, S. S., & Urquhart, R. ( 2016 ). Urinary exosomal miRNA signature in type II diabetic nephropathy patients. PLoS One 11 ( 3 ), E0150154.
dc.identifier.citedreferenceDhondt, B., Geeurickx, E., Tulkens, J., Van Deun, J., Vergauwen, G., Lippens, L., Miinalainen, I., Rappu, P., Heino, J., Ost, P., Lumen, N., De Wever, O., & Hendrix, A. ( 2020 ). Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density- based fractionation of urine. Journal of Extracellular Vesicles 9 ( 1 ), 1736935.
dc.identifier.citedreferenceDhondt, B., Lumen, N., De Wever, O., & Hendrix, A. ( 2020 ). Preparation of multi- omics grade extracellular vesicles by density- based fractionation of urine. STAR Protocols 1 ( 2 ), 100073.
dc.identifier.citedreferenceDhondt, B., Van Deun, J., Vermaerke, S., de Marco, A., Lumen, N., De Wever, O., & Hendrix, A. ( 2018 ). Urinary extracellular vesicle biomarkers in urological cancers: From discovery towards clinical implementation. International Journal of Biochemistry & Cell Biology 99, 236 - 256.
dc.identifier.citedreferenceDijkstra, S., Birker, I. L., Smit, F. P., Leyten, G. H., de Reijke, T. M., van Oort, I. M., Mulders, P. F., Jannink, S. A., & Schalken, J. A. ( 2014 ). Prostate cancer biomarker profiles in urinary sediments and exosomes. Journal of Urology 191 ( 4 ), 1132 - 1138.
dc.identifier.citedreferenceDimuccio, V., Peruzzi, L., Brizzi, M. F., Cocchi, E., Fop, F., Boido, A., Gili, M., Gallo, S., Biancone, L., Camussi, G., & Bussolati, B. ( 2020 ). Acute and chronic glomerular damage is associated with reduced CD133 expression in urinary extracellular vesicles. American Journal of Physiology. Renal Physiology 318 ( 2 ), F486 - f495.
dc.identifier.citedreferenceVeziroglu, E. M., & Mias, G. I. ( 2020 ). Characterizing extracellular vesicles and their diverse RNA contents. Frontiers in Genetics 11, 700.
dc.identifier.citedreferenceDimuccio, V., Ranghino, A., Pratico Barbato, L., Fop, F., Biancone, L., Camussi, G., & Bussolati, B. ( 2014 ). Urinary CD133+ extracellular vesicles are decreased in kidney transplanted patients with slow graft function and vascular damage. PLoS One 9 ( 8 ), E104490.
dc.identifier.citedreferenceDonovan, M. J., Noerholm, M., Bentink, S., Belzer, S., Skog, J., O’Neill, V., Cochran, J. S., & Brown, G. A. ( 2015 ). A molecular signature of PCA3 and ERG exosomal RNA from non- DRE urine is predictive of initial prostate biopsy result. Prostate Cancer and Prostatic Diseases 18 ( 4 ), 370 - 375.
dc.identifier.citedreferenceDuijvesz, D., Versluis, C. Y., van der Fels, C. A., Vredenbregt- van den Berg, M. S., Leivo, J., Peltola, M. T., Bangma, C. H., Pettersson, K. S., & Jenster, G. ( 2015 ). Immuno- based detection of extracellular vesicles in urine as diagnostic marker for prostate cancer. International Journal of Cancer 137 ( 12 ), 2869 - 2878.
dc.identifier.citedreferenceErdbrugger, U., & Le, T. H. ( 2016 ). Extracellular vesicles in renal diseases: More than novel biomarkers? Journal of the American Society of Nephrology 27 ( 1 ), 12 - 26.
dc.identifier.citedreferenceErozenci, L. A., Bottger, F., Bijnsdorp, I. V., & Jimenez, C. R. ( 2019 ). Urinary exosomal proteins as (pan- )cancer biomarkers: Insights from the proteome. FEBS Letters 593 ( 13 ), 1580 - 1597.
dc.identifier.citedreferenceEveraert, C., Helsmoortel, H., Decock, A., Hulstaert, E., Van Paemel, R., Verniers, K., Nuytens, J., Anckaert, J., Nijs, N., Tulkens, J., Dhondt, B., Hendrix, A., Mestdagh, P., & Vandesompele, J. ( 2019 ). Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles. Scientific Reports 9 ( 1 ), 17574.
dc.identifier.citedreferenceFan, W., Ankawi, G., Zhang, J., Digvijay, K., Giavarina, D., Yin, Y., & Ronco, C. ( 2019 ). Current understanding and future directions in the application of TIMP- 2 and IGFBP7 in AKI clinical practice. Clinical Chemistry and Laboratory Medicine 57 ( 5 ): 567 - 576.
dc.identifier.citedreferenceFernandez- Llama, P., Khositseth, S., Gonzales, P. A., Star, R. A., Pisitkun, T., & Knepper, M. A. ( 2010 ). Tamm- Horsfall protein and urinary exosome isolation. Kidney International 77 ( 8 ), 736 - 742.
dc.identifier.citedreferenceFirsov, D., & Bonny, O. ( 2018 ). Circadian rhythms and the kidney. Nature Reviews Nephrology 14 ( 10 ), 626 - 635.
dc.identifier.citedreferenceFisher, L. A., Johnson, T. S., Porter, D., Bleich, H. L., & Slack, W. V. ( 1977 ). Collection of a clean voided urine specimen: A comparison among spoken, written, and computer- based instructions. American Journal of Public Health 67 ( 7 ), 640 - 644.
dc.identifier.citedreferenceForni Ogna, V., Ogna, A., Vuistiner, P., Pruijm, M., Ponte, B., Ackermann, D., Gabutti, L., Vakilzadeh, N., Mohaupt, M., Martin, P. Y., Guessous, I., Pechere- Bertschi, A., Paccaud, F., Bochud, M., Burnier, M. & G. Swiss Survey on Salt ( 2015 ). New anthropometry- based age- and sex- specific reference values for urinary 24- hour creatinine excretion based on the adult Swiss population. BMC Medicine 13, 40.
dc.identifier.citedreferenceFraser, K. B., Rawlins, A. B., Clark, R. G., Alcalay, R. N., Standaert, D. G., Liu, N. J., West, A. B., & s. D. B. Program, P. ( 2016 ). Ser(P)- 1292 LRRK2 in urinary exosomes is elevated in idiopathic Parkinson’s disease. Movement Disorders 31 ( 10 ), 1543 - 1550.
dc.identifier.citedreferenceFreitas, D., Balmana, M., Pocas, J., Campos, D., Osorio, H., Konstantinidi, A., Vakhrushev, S. Y., Magalhaes, A., & Reis, C. A. ( 2019 ). Different isolation approaches lead to diverse glycosylated extracellular vesicle populations. Journal of Extracellular Vesicles 8 ( 1 ), 1621131.
dc.identifier.citedreferenceFujita, K., Kume, H., Matsuzaki, K., Kawashima, A., Ujike, T., Nagahara, A., Uemura, M., Miyagawa, Y., Tomonaga, T., & Nonomura, N. ( 2017 ). Proteomic analysis of urinary extracellular vesicles from high Gleason score prostate cancer. Scientific Reports 7, 42961.
dc.identifier.citedreferenceFujita, K., & Nonomura, N. ( 2018 ). Urinary biomarkers of prostate cancer. International Journal of Urology 25 ( 9 ), 770 - 779.
dc.identifier.citedreferenceGaffney, A., RAC ( 2014 ). Flip a Coin: FDA Approves Kidney Diagnostic With 50% False Positive Results. Regulatory Focus. Rockville, Maryland RAPS, Regulatory Affairs Professionals Society.
dc.identifier.citedreferenceGamez- Valero, A., Lozano- Ramos, S. I., Bancu, I., Lauzurica- Valdemoros, R., & Borras, F. E. ( 2015 ). Urinary extracellular vesicles as source of biomarkers in kidney diseases. Frontiers in immunology 6, 6.
dc.identifier.citedreferenceGhai, V., Wu, X., Bheda- Malge, A., Argyropoulos, C. P., Bernardo, J. F., Orchard, T., Galas, D., & Wang, K. ( 2018 ). Genome- wide profiling of urinary extracellular vesicle microRNAs associated with diabetic nephropathy in type 1 diabetes. Kidney International Reports 3 ( 3 ), 555 - 572.
dc.identifier.citedreferenceGhosh, A., Davey, M., Chute, I. C., Griffiths, S. G., Lewis, S., Chacko, S., Barnett, D., Crapoulet, N., Fournier, S., Joy, A., Caissie, M. C., Ferguson, A. D., Daigle, M., Meli, M. V., Lewis, S. M., & Ouellette, R. J. ( 2014 ). Rapid isolation of extracellular vesicles from cell culture and biological fluids using a synthetic peptide with specific affinity for heat shock proteins. PLoS One 9 ( 10 ), E110443.
dc.identifier.citedreferenceGildea, J. J., Seaton, J. E., Victor, K. G., Reyes, C. M., Bigler Wang, D., Pettigrew, A. C., Courtner, C. E., Shah, N., Tran, H. T., Van Sciver, R. E., Carlson, J. M., & Felder, R. A. ( 2014 ). Exosomal transfer from human renal proximal tubule cells to distal tubule and collecting duct cells. Clinical Biochemistry 47 ( 15 ), 89 - 94.
dc.identifier.citedreferenceGinsberg, J. M., Chang, B. S., Matarese, R. A., & Garella, S. ( 1983 ). Use of single voided urine samples to estimate quantitative proteinuria. New England Journal of Medicine 309 ( 25 ), 1543 - 1546.
dc.identifier.citedreferenceGleadle, J., McNicholas, K., Li, J., Michael, M., & Rojas- Canales, D. ( 2018 ). Nanoparticle tracking analysis of urine to detect exosomes can be confounded by albuminuria. Journal of the American Society of Nephrology 29 ( 6 ), 1784.
dc.identifier.citedreferenceGlover, S. C., Nouri, M. Z., Tuna, K. M., Mendoza Alvarez, L. B., Ryan, L. K., Shirley, J. F., Tang, Y., Denslow, N. D., & Alli, A. A. ( 2019 ). Lipidomic analysis of urinary exosomes from hereditary alpha- tryptasemia patients and healthy volunteers. FASEB Bioadv 1 ( 10 ), 624 - 638.
dc.identifier.citedreferenceGonzales, P. A., Pisitkun, T., Hoffert, J. D., Tchapyjnikov, D., Star, R. A., Kleta, R., Wang, N. S., & Knepper, M. A. ( 2009 ). Large- scale proteomics and phosphoproteomics of urinary exosomes. Journal of the American Society of Nephrology 20 ( 2 ), 363 - 379.
dc.identifier.citedreferenceGonzales, P. A., Zhou, H., Pisitkun, T., Wang, N. S., Star, R. A., Knepper, M. A., & Yuen, P. S. ( 2010 ). Isolation and purification of exosomes in urine. Methods in Molecular Biology 641: 89 - 99.
dc.identifier.citedreferenceGonzalez- Calero, L., Martinez, P. J., Martin- Lorenzo, M., Baldan- Martin, M., Ruiz- Hurtado, G., de la Cuesta, F., Calvo, E., Segura, J., Lopez, J. A., Vazquez, J., Barderas, M. G., Ruilope, L. M., Vivanco, F., & Alvarez- Llamas, G. ( 2017 ). Urinary exosomes reveal protein signatures in hypertensive patients with albuminuria. Oncotarget 8 ( 27 ), 44217 - 44231.
dc.identifier.citedreferenceGori, A., Romanato, A., Greta, B., Strada, A., Gagni, P., Frigerio, R., Brambilla, D., Vago, R., Galbiati, S., Picciolini, S., Bedoni, M., Daaboul, G. G., Chiari, M., & Cretich, M. ( 2020 ). Membrane- binding peptides for extracellular vesicles on- chip analysis. Journal of Extracellular Vesicles 9 ( 1 ), 1751428.
dc.identifier.citedreferenceGrange, C., Papadimitriou, E., Dimuccio, V., Pastorino, C., Molina, J., O’Kelly, R., Niedernhofer, L. J., Robbins, P. D., Camussi, G., & Bussolati, B. ( 2020 ). Urinary extracellular vesicles carrying Klotho improve the recovery of renal function in an acute tubular injury model. Molecular Therapy 28 ( 2 ), 490 - 502.
dc.identifier.citedreferenceGunasekaran, P. M., Luther, J. M., & Byrd, J. B. ( 2019 ). For what factors should we normalize urinary extracellular mRNA biomarkers? Biomolecular Detection and Quantification 17, 100090.
dc.identifier.citedreferenceGuo, Z., Zhang, Y., Zou, L., Wang, D., Shao, C., Wang, Y., Sun, W., & Zhang, L. ( 2015 ). A Proteomic Analysis of Individual and Gender Variations in Normal Human Urine and Cerebrospinal Fluid Using iTRAQ Quantification. PLoS One 10 ( 7 ), E0133270.
dc.identifier.citedreferenceHarpole, M., Davis, J., & Espina, V. ( 2016 ). Current state of the art for enhancing urine biomarker discovery. Expert review of Proteomics 13 ( 6 ), 609 - 626.
dc.identifier.citedreferenceHartjes, T. A., Mytnyk, S., Jenster, G. W., van Steijn, V., & van Royen, M. E. ( 2019 ). Extracellular vesicle quantification and characterization: Common methods and emerging approaches. Bioengineering (Basel) 6 ( 1 ), 7.
dc.identifier.citedreferenceHartjes, T. A., Slotman, J. A., Vredenbregt, M. S., Dits, N., Van der Meel, R., Duijvesz, D., Kulkarni, J. A., French, P. J., Van Cappellen, W. A., Schiffelers, R. M., Houtsmuller, A. B., Jenster, G. W., & Van Royen, M. E. ( 2020 ). EVQuant; high- throughput quantification and characterization of extracellular vesicle (sub)populations. bioRxiv: 2020.2010.2021.348375.
dc.identifier.citedreferenceHavanapan, P. O., & Thongboonkerd, V. ( 2009 ). Are protease inhibitors required for gel- based proteomics of kidney and urine? Journal of Proteome Research 8 ( 6 ), 3109 - 3117.
dc.identifier.citedreferenceHeadland, S. E., Jones, H. R., D’Sa, A. S., Perretti, M., & Norling, L. V. ( 2014 ). Cutting- edge analysis of extracellular microparticles using ImageStream(X) imaging flow cytometry. Scientific Reports 4, 5237.
dc.identifier.citedreferenceHendriks, R. J., Dijkstra, S., Jannink, S. A., Steffens, M. G., van Oort, I. M., Mulders, P. F., & Schalken, J. A. ( 2016 ). Comparative analysis of prostate cancer specific biomarkers PCA3 and ERG in whole urine, urinary sediments and exosomes. Clinical Chemistry and Laboratory Medicine 54 ( 3 ), 483 - 492.
dc.identifier.citedreferenceHiemstra, T. F., Charles, P. D., Gracia, T., Hester, S. S., Gatto, L., Al- Lamki, R., Floto, R. A., Su, Y., Skepper, J. N., Lilley, K. S., & Karet Frankl, F. E. ( 2014 ). Human urinary exosomes as innate immune effectors. Journal of the American Society of Nephrology 25 ( 9 ), 2017 - 2027.
dc.identifier.citedreferenceHiemstra, T. F., Charles, P. D., Hester, S. S., Karet, F. E., & Lilley, K. S. ( 2011 ). Uromodulin exclusion list improves urinary exosomal protein identification. Journal of Biomolecular Techniques 22 ( 4 ), 136 - 145.
dc.identifier.citedreferenceHjelle, J. T., Miller- Hjelle, M. A., Poxton, I. R., Kajander, E. O., Ciftcioglu, N., Jones, M. L., Caughey, R. C., Brown, R., Millikin, P. D., & Darras, F. S. ( 2000 ). Endotoxin and nanobacteria in polycystic kidney disease. Kidney International 57 ( 6 ), 2360 - 2374.
dc.identifier.citedreferenceHogan, M. C., Johnson, K. L., Zenka, R. M., Charlesworth, M. C., Madden, B. J., Mahoney, D. W., Oberg, A. L., Huang, B. Q., Leontovich, A. A., Nesbitt, L. L., Bakeberg, J. L., McCormick, D. J., Bergen, H. R., & Ward, C. J. ( 2014 ). Subfractionation, characterization, and in- depth proteomic analysis of glomerular membrane vesicles in human urine. Kidney International 85 ( 5 ), 1225 - 1237.
dc.identifier.citedreferenceHogan, M. C., Lieske, J. C., Lienczewski, C. C., Nesbitt, L. L., Wickman, L. T., Heyer, C. M., Harris, P. C., Ward, C. J., Sundsbak, J. L., Manganelli, L., Ju, W., Kopp, J. B., Nelson, P. J., Adler, S. G., Reich, H. N., Holzmann, L. B., Kretzler, M., & Bitzer, M. ( 2015 ). Strategy and rationale for urine collection protocols employed in the NEPTUNE study. BMC Nephrology 16 ( 1 ), 190.
dc.identifier.citedreferenceHogan, M. C., Manganelli, L., Woollard, J. R., Masyuk, A. I., Masyuk, T. V., Tammachote, R., Huang, B. Q., Leontovich, A. A., Beito, T. G., Madden, B. J., Charlesworth, M. C., Torres, V. E., LaRusso, N. F., Harris, P. C., & Ward, C. J. ( 2009 ). Characterization of PKD protein- positive exosome- like vesicles. Journal of the American Society of Nephrology 20 ( 2 ), 278 - 288.
dc.identifier.citedreferenceHole, P., Sillence, K., Hannell, C., Maguire, C. M., Roesslein, M., Suarez, G., Capracotta, S., Magdolenova, Z., Horev- Azaria, L., Dybowska, A., Cooke, L., Haase, A., Contal, S., Manø, S., Vennemann, A., Sauvain, J.- J., Staunton, K. C., Anguissola, S., Luch, A., Dusinska, M., Korenstein, R., Gutleb, A. C., Wiemann, M., Prina- Mello, A., Riediker, M., Wick, P. ( 2013 ). Interlaboratory comparison of size measurements on nanoparticles using nanoparticle tracking analysis (NTA). Journal of Nanoparticle Research, 15, ( 12 ), https://doi.org/10.1007/s11051- 013- 2101- 8.
dc.identifier.citedreferenceHuebner, A. R., Somparn, P., Benjachat, T., Leelahavanichkul, A., Avihingsanon, Y., Fenton, R. A., & Pisitkun, T. ( 2015 ). Exosomes in urine biomarker discovery. Advances in Experimental Medicine and Biology 845, 43 - 58.
dc.identifier.citedreferenceIliescu, F. S., Vrtacnik, D., Neuzil, P., & Iliescu, C. ( 2019 ). Microfluidic Technology for Clinical Applications of Exosomes. Micromachines 10 ( 6 ), 392.
dc.identifier.citedreferenceInman, B. A., Etienne, W., Rubin, R., Owusu, R. A., Oliveira, T. R., Rodriques, D. B., Maccarini, P. F., Stauffer, P. R., Mashal, A., & Dewhirst, M. W. ( 2013 ). The impact of temperature and urinary constituents on urine viscosity and its relevance to bladder hyperthermia treatment. International Journal of Hyperthermia 29 ( 3 ), 206 - 210.
dc.identifier.citedreferenceIslam, M. K., Syed, P., Lehtinen, L., Leivo, J., Gidwani, K., Wittfooth, S., Pettersson, K., & Lamminmaki, U. ( 2019 ). A nanoparticle- based approach for the detection of extracellular vesicles. Scientific Reports 9 ( 1 ), 10038.
dc.identifier.citedreferenceKalani, A., Mohan, A., Godbole, M. M., Bhatia, E., Gupta, A., Sharma, R. K., & Tiwari, S. ( 2013 ). Wilm’s tumor- 1 protein levels in urinary exosomes from diabetic patients with or without proteinuria. PLoS One 8 ( 3 ), E60177.
dc.identifier.citedreferenceKalluri, R., & LeBleu, V. S. ( 2020 ). The biology, function, and biomedical applications of exosomes. Science 367 ( 6478 ), eaau6977
dc.identifier.citedreferenceKalra, H., Simpson, R. J., Ji, H., Aikawa, E., Altevogt, P., Askenase, P., Bond, V. C., Borràs, F. E., Breakefield, X., Budnik, V., Buzas, E., Camussi, G., Clayton, A., Cocucci, E., Falcon- Perez, J. M., Gabrielsson, S., Gho, Y. S., Gupta, D., Harsha, H. C. - ¦ Mathivanan, S. ( 2012 ). Vesiclepedia: A compendium for extracellular vesicles with continuous community annotation. PLoS Biology 10 ( 12 ), E1001450.
dc.identifier.citedreferenceKang, C. S., Ban, M., Choi, E. J., Moon, H. G., Jeon, J. S., Kim, D. K., Park, S. K., Jeon, S. G., Roh, T. Y., Myung, S. J., Gho, Y. S., Kim, J. G., & Kim, Y. K. ( 2013 ). Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium- induced colitis. PLoS One 8 ( 10 ), E76520.
dc.identifier.citedreferenceKarpman, D., Stahl, A. L., & Arvidsson, I. ( 2017 ). Extracellular vesicles in renal disease. Nature Reviews Nephrology 13 ( 9 ), 545 - 562.
dc.identifier.citedreferenceKashani, K., Al- Khafaji, A., Ardiles, T., Artigas, A., Bagshaw, S. M., Bell, M., Bihorac, A., Birkhahn, R., Cely, C. M., Chawla, L. S., Davison, D. L., Feldkamp, T., Forni, L. G., Gong, M. N., Gunnerson, K. J., Haase, M., Hackett, J., Honore, P. M., Hoste, E. A. - ¦ Kellum, J. A. ( 2013 ). Discovery and validation of cell cycle arrest biomarkers in human acute kidney injury. Critical Care (London, England) 17 ( 1 ), R25.
dc.identifier.citedreferenceKeller, S., Rupp, C., Stoeck, A., Runz, S., Fogel, M., Lugert, S., Hager, H. D., Abdel- Bakky, M. S., Gutwein, P., & Altevogt, P. ( 2007 ). CD24 is a marker of exosomes secreted into urine and amniotic fluid. Kidney International 72 ( 9 ), 1095 - 1102.
dc.identifier.citedreferenceKerjaschki, D., Schulze, M., Binder, S., Kain, R., Ojha, P. P., Susani, M., Horvat, R., Baker, P. J., & Couser, W. G. ( 1989 ). Transcellular transport and membrane insertion of the C5b- 9 membrane attack complex of complement by glomerular epithelial cells in experimental membranous nephropathy. Journal of Immunology 143 ( 2 ), 546 - 552.
dc.identifier.citedreferenceKhamis, M. M., Holt, T., Awad, H., El- Aneed, A., & Adamko, D. J. ( 2018 ). Comparative analysis of creatinine and osmolality as urine normalization strategies in targeted metabolomics for the differential diagnosis of asthma and COPD. Metabolomics 14 ( 9 ), 115.
dc.identifier.citedreferenceKhurana, R., Ranches, G., Schafferer, S., Lukasser, M., Rudnicki, M., Mayer, G., & Huttenhofer, A. ( 2017 ). Identification of urinary exosomal noncoding RNAs as novel biomarkers in chronic kidney disease. RNA 23 ( 2 ), 142 - 152.
dc.identifier.citedreferenceKnol, J. C., de Reus, I., Schelfhorst, T., Beekhof, R., de Wit, M., Piersma, S. R., Pham, T. V., Smit, E. F., Verheul, H. M. W., & Jimenez, C. R. ( 2016 ). Peptide- mediated - miniprep- isolation of extracellular vesicles is suitable for high- throughput proteomics. EuPA Open Proteomics 11, 11 - 15.
dc.identifier.citedreferenceKoliha, N., Wiencek, Y., Heider, U., Jungst, C., Kladt, N., Krauthauser, S., Johnston, I. C., Bosio, A., Schauss, A., & Wild, S. ( 2016 ). A novel multiplex bead- based platform highlights the diversity of extracellular vesicles. Journal of Extracellular Vesicles 5, 29975.
dc.identifier.citedreferenceKonoshenko, M. Y., Lekchnov, E. A., Vlassov, A. V., & Laktionov, P. P. ( 2018 ). Isolation of Extracellular Vesicles: General Methodologies and Latest Trends. BioMed Research International 2018, 8545347.
dc.identifier.citedreferenceKoopman, M. G., Krediet, R. T., Koomen, G. C., Strackee, J., & Arisz, L. ( 1989 ). Circadian rhythm of proteinuria: Consequences of the use of urinary protein:creatinine ratios. Nephrology, Dialysis, Transplantation 4 ( 1 ), 9 - 14.
dc.identifier.citedreferenceKoppers- Lalic, D., Hackenberg, M., de, M. R., Misovic, B., Wachalska, M., Geldof, A., Zini, N., de, R. T., Wurdinger, T., Vis, A., van, M. J., Pegtel, M., & Bijnsdorp, I. ( 2016 ). Noninvasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles. Oncotarget 7 ( 16 ), 22566 - 22578.
dc.identifier.citedreferenceKoritzinsky, E. H., Street, J. M., Chari, R. R., Glispie, D. M., Bellomo, T. R., Aponte, A. M., Star, R. A., & Yuen, P. S. T. ( 2019 ). Circadian variation in the release of small extracellular vesicles can be normalized by vesicle number or TSG101. American Journal of Physiology. Renal Physiology 317 ( 5 ), F1098 - F1110.
dc.identifier.citedreferenceKowal, J., Arras, G., Colombo, M., Jouve, M., Morath, J. P., Primdal- Bengtson, B., Dingli, F., Loew, D., Tkach, M., & Thery, C. ( 2016 ). Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes. Proceedings of the National Academy of Sciences of the United States of America 113 ( 8 ), E968 - 977.
dc.identifier.citedreferenceKruglik, S. G., Royo, F., Guigner, J. M., Palomo, L., Seksek, O., Turpin, P. Y., Tatischeff, I., & Falcon- Perez, J. M. ( 2019 ). Raman tweezers microspectroscopy of circa 100 nm extracellular vesicles. Nanoscale 11 ( 4 ), 1661 - 1679.
dc.identifier.citedreferenceKu, A., Lim, H. C., Evander, M., Lilja, H., Laurell, T., Scheding, S., & Ceder, Y. ( 2018 ). Acoustic enrichment of extracellular vesicles from biological fluids. Analytical Chemistry 90 ( 13 ), 8011 - 8019.
dc.identifier.citedreferenceKu, A., Ravi, N., Yang, M., Evander, M., Laurell, T., Lilja, H., & Ceder, Y. ( 2019 ). A urinary extracellular vesicle microRNA biomarker discovery pipeline; from automated extracellular vesicle enrichment by acoustic trapping to microRNA sequencing. PLoS One 14 ( 5 ), E0217507.
dc.identifier.citedreferenceKwon, S. H., Woollard, J. R., Saad, A., Garovic, V. D., Zand, L., Jordan, K. L., Textor, S. C., & Lerman, L. O. ( 2017 ). Elevated urinary podocyte- derived extracellular microvesicles in renovascular hypertensive patients. Nephrology, Dialysis, Transplantation 32 ( 5 ), 800 - 807.
dc.identifier.citedreferenceLa Salvia, S., Gunasekaran, P. M., Byrd, J. B., & Erdbrugger, U. ( 2020 ). Extracellular vesicles in essential hypertension: Hidden messengers. Current Hypertension Reports 22 ( 10 ), 76.
dc.identifier.citedreferenceLangevin, S. M., Kuhnell, D., Biesiada, J., Zhang, X., Medvedovic, M., Talaska, G. G., Burns, K. A., & Kasper, S. ( 2020 ). Comparability of the small RNA secretome across human biofluids concomitantly collected from healthy adults. PLoS One 15 ( 4 ), E0229976.
dc.identifier.citedreferenceLarssen, P., Wik, L., Czarnewski, P., Eldh, M., Lof, L., Ronquist, K. G., Dubois, L., Freyhult, E., Gallant, C. J., Oelrich, J., Larsson, A., Ronquist, G., Villablanca, E. J., Landegren, U., Gabrielsson, S., & Kamali- Moghaddam, M. ( 2017 ). Tracing cellular origin of human exosomes using multiplex proximity extension assays. Molecular and Cellular Proteomics 16 ( 3 ), 502 - 511.
dc.identifier.citedreferenceLee, J., McKinney, K. Q., Pavlopoulos, A. J., Niu, M., Kang, J. W., Oh, J. W., Kim, K. P., & Hwang, S. ( 2018 ). Altered proteome of extracellular vesicles derived from bladder cancer patients urine. Molecules and Cells 41 ( 3 ), 179 - 187.
dc.identifier.citedreferenceLee, Y., Park, J. Y., Lee, E. H., Yang, J., Jeong, B. R., Kim, Y. K., Seoh, J. Y., Lee, S., Han, P. L., & Kim, E. J. ( 2017 ). Rapid assessment of microbiota changes in individuals with autism spectrum disorder using bacteria- derived membrane vesicles in urine. Experimental Neurobiology 26 ( 5 ), 307 - 317.
dc.identifier.citedreferenceLehmann, S., Guadagni, F., Moore, H., Ashton, G., Barnes, M., Benson, E., Clements, J., Koppandi, I., Coppola, D., Demiroglu, S. Y., DeSouza, Y., De Wilde, A., Duker, J., Eliason, J., Glazer, B., Harding, K., Jeon, J. P., Kessler, J., Kokkat, T. - ¦ Betsou, F. & B. International Society for and S. Environmental Repositories Working Group on Biospecimen ( 2012 ). Standard preanalytical coding for biospecimens: Review and implementation of the Sample PREanalytical Code (SPREC). Biopreserv Biobank 10 ( 4 ), 366 - 374.
dc.identifier.citedreferenceLeiblich, A. ( 2017 ). Recent Developments in the Search for Urinary Biomarkers in Bladder Cancer. Current Urology Reports 18 ( 12 ), 100.
dc.identifier.citedreferenceLi, Y., Zhang, Y., Qiu, F., & Qiu, Z. ( 2011 ). Proteomic identification of exosomal LRG1: A potential urinary biomarker for detecting NSCLC. Electrophoresis 32 ( 15 ), 1976 - 1983.
dc.identifier.citedreferenceLiang, L. G., Kong, M. Q., Zhou, S., Sheng, Y. F., Wang, P., Yu, T., Inci, F., Kuo, W. P., Li, L. J., Demirci, U., & Wang, S. ( 2017 ). An integrated double- filtration microfluidic device for isolation, enrichment and quantification of urinary extracellular vesicles for detection of bladder cancer. Scientific Reports 7, 46224.
dc.identifier.citedreferenceLondono, I., & Bendayan, M. ( 2005 ). Glomerular handling of native albumin in the presence of circulating modified albumins by the normal rat kidney. American Journal of Physiology. Renal Physiology 289 ( 6 ), F1201 - F1209.
dc.identifier.citedreferenceLongmire, M., Choyke, P. L., & Kobayashi, H. ( 2008 ). Clearance properties of nano- sized particles and molecules as imaging agents: Considerations and caveats. Nanomedicine (Lond) 3 ( 5 ), 703 - 717.
dc.identifier.citedreferenceLotvall, J., Hill, A. F., Hochberg, F., Buzas, E. I., Di Vizio, D., Gardiner, C., Gho, Y. S., Kurochkin, I. V., Mathivanan, S., Quesenberry, P., Sahoo, S., Tahara, H., Wauben, M. H., Witwer, K. W., & Thery, C. ( 2014 ). Minimal experimental requirements for definition of extracellular vesicles and their functions: A position statement from the International Society for Extracellular Vesicles. Journal of Extracellular Vesicles 3, 26913.
dc.identifier.citedreferenceLozano- Ramos, I., Bancu, I., Oliveira- Tercero, A., Armengol, M. P., Menezes- Neto, A., Del Portillo, H. A., Lauzurica- Valdemoros, R., & Borras, F. E. ( 2015 ). Size- exclusion chromatography- based enrichment of extracellular vesicles from urine samples. Journal of Extracellular Vesicles 4, 27369.
dc.identifier.citedreferenceLozano- Ramos, S. I., Bancu, I., Carreras- Planella, L., Monguio- Tortajada, M., Canas, L., Juega, J., Bonet, J., Armengol, M. P., Lauzurica, R., & Borras, F. E. ( 2018 ). Molecular profile of urine extracellular vesicles from normo- functional kidneys reveal minimal differences between living and deceased donors. BMC Nephrology 19 ( 1 ), 189.
dc.identifier.citedreferenceLytvyn, Y., Xiao, F., Kennedy, C. R., Perkins, B. A., Reich, H. N., Scholey, J. W., Cherney, D. Z., & Burger, D. ( 2017 ). Assessment of urinary microparticles in normotensive patients with type 1 diabetes. Diabetologia 60 ( 3 ), 581 - 584.
dc.identifier.citedreferenceMagiorkinis, E., & Diamantis, A. ( 2015 ). The fascinating story of urine examination: From uroscopy to the era of microscopy and beyond. Diagnostic Cytopathology 43 ( 12 ), 1020 - 1036.
dc.identifier.citedreferenceManoni, F., Gessoni, G., Alessio, M. G., Caleffi, A., Saccani, G., Silvestri, M. G., Poz, D., Ercolin, M., Tinello, A., Valverde, S., Ottomano, C., & Lippi, G. ( 2011 ). Mid- stream vs. first- voided urine collection by using automated analyzers for particle examination in healthy subjects: An Italian multicenter study. Clinical Chemistry and Laboratory Medicine 50 ( 4 ), 679 - 684.
dc.identifier.citedreferenceMata Forsberg, M., Bjorkander, S., Pang, Y., Lundqvist, L., Ndi, M., Ott, M., Escriba, I. B., Jaeger, M. C., Roos, S., & Sverremark- Ekstrom, E. ( 2019 ). Extracellular Membrane Vesicles from Lactobacilli Dampen IFN- gamma Responses in a Monocyte- Dependent Manner. Scientific Reports 9 ( 1 ), 17109.
dc.identifier.citedreferenceMateescu, B., Kowal, E. J., van Balkom, B. W., Bartel, S., Bhattacharyya, S. N., Buzas, E. I., Buck, A. H., de Candia, P., Chow, F. W., Das, S., Driedonks, T. A., Fernandez- Messina, L., Haderk, F., Hill, A. F., Jones, J. C., Van Keuren- Jensen, K. R., Lai, C. P., Lasser, C., Liegro, I. D. - ¦ Nolte- - t Hoen, E. N. ( 2017 ). Obstacles and opportunities in the functional analysis of extracellular vesicle RNA - an ISEV position paper. Journal of Extracellular Vesicles 6 ( 1 ), 1286095.
dc.identifier.citedreferenceMcKiernan, J., Donovan, M. J., Margolis, E., Partin, A., Carter, B., Brown, G., Torkler, P., Noerholm, M., Skog, J., Shore, N., Andriole, G., Thompson, I., & Carroll, P. ( 2018 ). A prospective adaptive utility trial to validate performance of a novel urine exosome gene expression assay to predict high- grade prostate cancer in patients with prostate- specific antigen 2- 10ng/ml at initial biopsy. European Urology 74 ( 6 ), 731 - 738.
dc.identifier.citedreferenceMcKiernan, J., Donovan, M. J., O’Neill, V., Bentink, S., Noerholm, M., Belzer, S., Skog, J., Kattan, M. W., Partin, A., Andriole, G., Brown, G., Wei, J. T., Thompson, I. M., Jr., & Carroll, P. ( 2016 ). A novel urine exosome gene expression assay to predict high- grade prostate cancer at initial biopsy. JAMA Oncology 2 ( 7 ), 882 - 889.
dc.identifier.citedreferenceMcNicholas, K., Li, J. Y., Michael, M. Z., & Gleadle, J. M. ( 2017 ). Albuminuria is not associated with elevated urinary vesicle concentration but can confound nanoparticle tracking analysis. Nephrology (Carlton, Vic.) 22 ( 11 ), 854 - 863.
dc.identifier.citedreferenceMerchant, M. L., Rood, I. M., Deegens, J. K. J., & Klein, J. B. ( 2017 ). Isolation and characterization of urinary extracellular vesicles: Implications for biomarker discovery. Nature Reviews Nephrology 13 ( 12 ), 731 - 749.
dc.identifier.citedreferenceMicanovic, R., Khan, S., Janosevic, D., Lee, M. E., Hato, T., Srour, E. F., Winfree, S., Ghosh, J., Tong, Y., Rice, S. E., Dagher, P. C., Wu, X. R., & El- Achkar, T. M. ( 2018 ). Tamm- Horsfall protein regulates mononuclear phagocytes in the kidney. Journal of the American Society of Nephrology 29 ( 3 ), 841 - 856.
dc.identifier.citedreferenceMinciacchi, V. R., Zijlstra, A., Rubin, M. A., & Di Vizio, D. ( 2017 ). Extracellular vesicles for liquid biopsy in prostate cancer: Where are we and where are we headed? Prostate Cancer and Prostatic Diseases 20 ( 3 ), 251 - 258.
dc.identifier.citedreferenceMiranda, K. C., Bond, D. T., Levin, J. Z., Adiconis, X., Sivachenko, A., Russ, C., Brown, D., Nusbaum, C., & Russo, L. M. ( 2014 ). Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non- coding RNA. PLoS One 9 ( 5 ), E96094.
dc.identifier.citedreferenceMiranda, K. C., Bond, D. T., McKee, M., Skog, J., Paunescu, T. G., Da, S. N., Brown, D., & Russo, L. M. ( 2010 ). Nucleic acids within urinary exosomes/microvesicles are potential biomarkers for renal disease. Kidney International 78 ( 2 ), 191 - 199.
dc.identifier.citedreferenceMitchell, P. J., Welton, J., Staffurth, J., Court, J., Mason, M. D., Tabi, Z., & Clayton, A. ( 2009 ). Can urinary exosomes act as treatment response markers in prostate cancer? Journal of Translational Medicine 7, 4.
dc.identifier.citedreferenceMoatamed, N. A. ( 2019 ). Biobanking of Urine Samples. Methods in Molecular Biology 1897: 115 - 124.
dc.identifier.citedreferenceMolina, L., Salvetat, N., Ameur, R. B., Peres, S., Sommerer, N., Jarraya, F., Ayadi, H., Molina, F., & Granier, C. ( 2011 ). Analysis of the variability of human normal urine by 2D- GE reveals a public and a private proteome. Journal of Proteomics 75 ( 1 ), 70 - 80.
dc.identifier.citedreferenceMomen- Heravi, F., Balaj, L., Alian, S., Trachtenberg, A., Hochberg, F., Skog, J., & Kuo, W. ( 2012 ). Impact of biofluid viscosity on size and sedimentation efficiency of the isolated microvesicles. Frontiers in Physiology 3 ( 162 ).
dc.identifier.citedreferenceMonguio- Tortajada, M., Moron- Font, M., Gamez- Valero, A., Carreras- Planella, L., Borras, F. E., & Franquesa, M. ( 2019 ). Extracellular- vesicle isolation from different biological fluids by size- exclusion chromatography. Current Protocols in Stem Cell Biology 49 ( 1 ), E82.
dc.identifier.citedreferenceMoore, H. M., Kelly, A., Jewell, S. D., McShane, L. M., Clark, D. P., Greenspan, R., Hainaut, P., Hayes, D. F., Kim, P., Mansfield, E., Potapova, O., Riegman, P., Rubinstein, Y., Seijo, E., Somiari, S., Watson, P., Weier, H. U., Zhu, C., & Vaught, J. ( 2011 ). Biospecimen reporting for improved study quality. Biopreserv Biobank 9 ( 1 ), 57 - 70.
dc.identifier.citedreferenceMorikawa, Y., Takahashi, N., Kamiyama, K., Nishimori, K., Nishikawa, Y., Morita, S., Kobayashi, M., Fukushima, S., Yokoi, S., Mikami, D., Kimura, H., Kasuno, K., Yashiki, T., Naiki, H., Hara, M., & Iwano, M. ( 2018 ). Elevated levels of urinary extracellular vesicle fibroblast- specific protein 1 in patients with active crescentic glomerulonephritis. Nephron, 141 ( 3 ), 177 - 187.
dc.identifier.citedreferenceMunkonda, M. N., Akbari, S., Landry, C., Sun, S., Xiao, F., Turner, M., Holterman, C. E., Nasrallah, R., Hebert, R. L., Kennedy, C. R. J., & Burger, D. ( 2018 ). Podocyte- derived microparticles promote proximal tubule fibrotic signaling via p38 MAPK and CD36. Journal of Extracellular Vesicles 7 ( 1 ), 1432206.
dc.identifier.citedreferenceMurakami, T., Oakes, M., Ogura, M., Tovar, V., Yamamoto, C., & Mitsuhashi, M. ( 2014 ). Development of glomerulus- , tubule- , and collecting duct- specific mRNA assay in human urinary exosomes and microvesicles. PLoS One 9 ( 9 ), E109074.
dc.identifier.citedreferenceMusante, L., Bontha, S. V., Salvia, S. La, Fernandez- Pineros, A., Lannigan, J., Le, T. H., Mas, V., & Erdbrugger, U. ( 2020 ). Rigorous characterization of urinary extracellular vesicles (uEVs) in the low centrifugation pellet - a neglected source for uEVs. Scientific Reports 10 ( 1 ), 3701.
dc.identifier.citedreferenceMusante, L., Saraswat, M., Duriez, E., Byrne, B., Ravida, A., Domon, B., & Holthofer, H. ( 2012 ). Biochemical and Physical Characterisation of Urinary Nanovesicles following CHAPS Treatment. PLoS One 7 ( 7 ), e37279.
dc.identifier.citedreferenceMusante, L., Saraswat, M., Ravida, A., Byrne, B., & Holthofer, H. ( 2013 ). Recovery of urinary nanovesicles from ultracentrifugation supernatants. Nephrology Dialysis Transplantation 28 ( 6 ), 1425 - 1433.
dc.identifier.citedreferenceMusante, L., Tataruch, D., Gu, D., Liu, X., Forsblom, C., Groop, P. H., & Holthofer, H. ( 2015 ). Proteases and protease inhibitors of urinary extracellular vesicles in diabetic nephropathy. Journal of Diabetes Research 2015, 289734.
dc.identifier.citedreferenceMusante, L., Tataruch, D., Gu, D. F., Benito- Martin, A., Calzaferri, G., Aherne, S., & Holthofer, H. ( 2014 ). A simplified method to recover urinary vesicles for clinical applications, and sample banking. Scientific Reports 4, 7532.
dc.identifier.citedreferenceMusante, L., Tataruch- Weinert, D., Kerjaschki, D., Henry, M., Meleady, P., & Holthofer, H. ( 2017 ). Residual urinary extracellular vesicles in ultracentrifugation supernatants after hydrostatic filtration dialysis enrichment. Journal of Extracellular Vesicles 6 ( 1 ), 1267896.
dc.identifier.citedreferenceMussack, V., Wittmann, G., & Pfaffl, M. W. ( 2019 ). Comparing small urinary extracellular vesicle purification methods with a view to RNA sequencing- Enabling robust and non- invasive biomarker research. Biomolecular Detection and Quantification 17, 100089.
dc.identifier.citedreferenceNagaraj, N., & Mann, M. ( 2011 ). Quantitative analysis of the intra- and inter- individual variability of the normal urinary proteome. Journal of Proteome Research 10 ( 2 ), 637 - 645.
dc.identifier.citedreferenceNanni, U., Betsou, F., Riondino, S., Rossetti, L., Spila, A., Valente, M. G., Della- Morte, D., Palmirotta, R., Roselli, M., Ferroni, P., & Guadagni, F. ( 2012 ). SPRECware: Software tools for Standard PREanalytical Code (SPREC) labeling - effective exchange and search of stored biospecimens. International Journal of Biological Markers 27 ( 3 ), E272 - 279.
dc.identifier.citedreferenceNazarenko, I. ( 2020 ). Extracellular vesicles: Recent developments in technology and perspectives for cancer liquid biopsy. Recent Results in Cancer Research 215: 319 - 344.
dc.identifier.citedreferenceNdisang, J. F. ( 2018 ). Glomerular endothelium and its impact on glomerular filtration barrier in diabetes: Are the gaps still illusive? Current Medicinal Chemistry 25 ( 13 ), 1525 - 1529.
dc.identifier.citedreferenceNilsson, J., Skog, J., Nordstrand, A., Baranov, V., Mincheva- Nilsson, L., Breakefield, X. O., & Widmark, A. ( 2009 ). Prostate cancer- derived urine exosomes: A novel approach to biomarkers for prostate cancer. British Journal of Cancer 100 ( 10 ), 1603 - 1607.
dc.identifier.citedreferenceNisell, H., Trygg, M., & Bäck, R. ( 2006 ). Urine albumin/creatinine ratio for the assessment of albuminuria in pregnancy hypertension. Acta Obstetricia Et Gynecologica Scandinavica 85 ( 11 ), 1327 - 1330.
dc.identifier.citedreferenceNolte- - t Hoen, E., Cremer, T., Gallo, R. C., & Margolis, L. B. ( 2016 ). Extracellular vesicles and viruses: Are they close relatives? Proceedings of the National Academy of Sciences of the United States of America 113 ( 33 ), 9155 - 9161.
dc.identifier.citedreferenceOeyen, E., Van Mol, K., Baggerman, G., Willems, H., Boonen, K., Rolfo, C., Pauwels, P., Jacobs, A., Schildermans, K., Cho, W. C., & Mertens, I. ( 2018 ). Ultrafiltration and size exclusion chromatography combined with asymmetrical- flow field- flow fractionation for the isolation and characterisation of extracellular vesicles from urine. Journal of Extracellular Vesicles 7 ( 1 ), 1490143.
dc.identifier.citedreferenceOeyen, E., Willems, H., t Kindt, R., Sandra, K., Boonen, K., Hoekx, L., De Wachter, S., Ameye, F., & Mertens, I. ( 2019 ). Determination of variability due to biological and technical variation in urinary extracellular vesicles as a crucial step in biomarker discovery studies. Journal of Extracellular Vesicles 8 ( 1 ), 1676035.
dc.identifier.citedreferenceOlinger, E., Lake, J., Sheehan, S., Schiano, G., Takata, T., Tokonami, N., Debaix, H., Consolato, F., Rampoldi, L., Korstanje, R., & Devuyst, O. ( 2019 ). Hepsin- mediated processing of uromodulin is crucial for salt- sensitivity and thick ascending limb homeostasis. Scientific Reports 9 ( 1 ), 12287.
dc.identifier.citedreferenceRaimondo, F., Chinello, C., Stella, M., Santorelli, L., Magni, F., & Pitto, M. ( 2018 ). Effects of hematuria on the proteomic profile of urinary extracellular vesicles: Technical challenges. Journal of Proteome Research 17 ( 8 ), 2572 - 2580.
dc.identifier.citedreferenceOosthuyzen, W., Scullion, K. M., Ivy, J. R., Morrison, E. E., Hunter, R. W., Starkey Lewis, P. J., O’Duibhir, E., Street, J. M., Caporali, A., Gregory, C. D., Forbes, S. J., Webb, D. J., Bailey, M. A., & Dear, J. W. ( 2016 ). Vasopressin regulates extracellular vesicle uptake by kidney collecting duct cells. Journal of the American Society of Nephrology 27 ( 11 ), 3345 - 3355.
dc.identifier.citedreferenceOosthuyzen, W., Sime, N. E., Ivy, J. R., Turtle, E. J., Street, J. M., Pound, J., Bath, L. E., Webb, D. J., Gregory, C. D., Bailey, M. A., & Dear, J. W. ( 2013 ). Quantification of human urinary exosomes by nanoparticle tracking analysis. Journal of Physiology 591 ( 23 ), 5833 - 5842.
dc.identifier.citedreferenceà verbye, A., Skotland, T., Koehler, C. J., Thiede, B., Seierstad, T., Berge, V., Sandvig, K., & Llorente, A. ( 2015 ). Identification of prostate cancer biomarkers in urinary exosomes. Oncotarget 6 ( 30 ), 30357 - 30376.
dc.identifier.citedreferencePaisrisarn, P., Yasui, T., & Baba, Y. ( 2020 ). A Method to Analyze Urinary Extracellular Vesicles. Analytical Sciences 36 ( 7 ), 791 - 798.
dc.identifier.citedreferencePalanisamy, V., Sharma, S., Deshpande, A., Zhou, H., Gimzewski, J., & Wong, D. T. ( 2010 ). Nanostructural and transcriptomic analyses of human saliva derived exosomes. PLoS One 5 ( 1 ), E8577.
dc.identifier.citedreferencePalomo, L., Casal, E., Royo, F., Cabrera, D., van- Liempd, S., & Falcon- Perez, J. M. ( 2014 ). Considerations for applying metabolomics to the analysis of extracellular vesicles. Frontiers in Immunology 5: 651.
dc.identifier.citedreferencePalviainen, M., Saraswat, M., Varga, Z., Kitka, D., Neuvonen, M., Puhka, M., Joenvaara, S., Renkonen, R., Nieuwland, R., Takatalo, M., & Siljander, P. R. M. ( 2020 ). Extracellular vesicles from human plasma and serum are carriers of extravesicular cargo- Implications for biomarker discovery. PLoS One 15 ( 8 ), E0236439.
dc.identifier.citedreferencePark, S., Lee, K., Park, I. B., Kim, N. H., Cho, S., Rhee, W. J., Oh, Y., Choi, J., Nam, S., & Lee, D. H. ( 2020 ). The profiles of microRNAs from urinary extracellular vesicles (EVs) prepared by various isolation methods and their correlation with serum EV microRNAs. Diabetes Research and Clinical Practice 160, 108010.
dc.identifier.citedreferenceParolini, I., Federici, C., Raggi, C., Lugini, L., Palleschi, S., De, M. A., Coscia, C., Iessi, E., Logozzi, M., Molinari, A., Colone, M., Tatti, M., Sargiacomo, M., & Fais, S. ( 2009 ). Microenvironmental pH is a key factor for exosome traffic in tumor cells. The Journal of Biological Chemistry 284 ( 49 ), 34211 - 34222.
dc.identifier.citedreferencePascual, M., Steiger, G., Sadallah, S., Paccaud, J. P., Carpentier, J. L., James, R., & Schifferli, J. A. ( 1994 ). Identification of membrane- bound CR1 (CD35) in human urine: Evidence for its release by glomerular podocytes. Journal of Experimental Medicine 179 ( 3 ), 889 - 899.
dc.identifier.citedreferencePatrakka, J., Lahdenkari, A. T., Koskimies, O., Holmberg, C., Wartiovaara, J., & Jalanko, H. ( 2002 ). The number of podocyte slit diaphragms is decreased in minimal change nephrotic syndrome. Pediatric Research 52 ( 3 ), 349 - 355.
dc.identifier.citedreferencePeinado, H., Aleckovic, M., Lavotshkin, S., Matei, I., Costa- Silva, B., Moreno- Bueno, G., Hergueta- Redondo, M., Williams, C., Garcia- Santos, G., Ghajar, C., Nitadori- Hoshino, A., Hoffman, C., Badal, K., Garcia, B. A., Callahan, M. K., Yuan, J., Martins, V. R., Skog, J., Kaplan, R. N. - ¦ Lyden, D. ( 2012 ). Melanoma exosomes educate bone marrow progenitor cells toward a pro- metastatic phenotype through MET. Nature Medicine 18 ( 6 ), 883 - 891.
dc.identifier.citedreferencePisitkun, T., Shen, R. F., & Knepper, M. A. ( 2004 ). Identification and proteomic profiling of exosomes in human urine. Proceedings of the National Academy of Sciences of the United States of America 101 ( 36 ), 13368 - 13373.
dc.identifier.citedreferencePloussard, G., & de la Taille, A. ( 2010 ). Urine biomarkers in prostate cancer. Nature Reviews. Urology 7 ( 2 ), 101 - 109.
dc.identifier.citedreferencePrunotto, M., Farina, A., Lane, L., Pernin, A., Schifferli, J., Hochstrasser, D. F., Lescuyer, P., & Moll, S. ( 2013 ). Proteomic analysis of podocyte exosome- enriched fraction from normal human urine. Journal of Proteomics 82: 193 - 229.
dc.identifier.citedreferencePuhka, M., Nordberg, M. E., Valkonen, S., Rannikko, A., Kallioniemi, O., Siljander, P., & Af Hallstrom, T. M. ( 2017 ). KeepEX, a simple dilution protocol for improving extracellular vesicle yields from urine. European Journal of Pharmaceutical Sciences 98: 30 - 39.
dc.identifier.citedreferencePuhka, M., Takatalo, M., Nordberg, M. E., Valkonen, S., Nandania, J., Aatonen, M., Yliperttula, M., Laitinen, S., Velagapudi, V., Mirtti, T., Kallioniemi, O., Rannikko, A., Siljander, P. R., & Af Hallstrom, T. M. ( 2017 ). Metabolomic profiling of extracellular vesicles and alternative normalization methods reveal enriched metabolites and strategies to study prostate cancer- related changes. Theranostics 7 ( 16 ), 3824 - 3841.
dc.identifier.citedreferenceQi, Y., Wang, X., Rose, K. L., MacDonald, W. H., Zhang, B., Schey, K. L., & Luther, J. M. ( 2016 ). Activation of the endogenous renin- angiotensin- aldosterone system or aldosterone administration increases urinary exosomal sodium channel excretion. Journal of the American Society of Nephrology 27 ( 2 ), 646 - 656.
dc.identifier.citedreferenceRabinovitch, A., Arzoumanian, L., Curcio, K. M., Dougherty, B, & Halim, A. B. ( 2009 ). Urinalysis; Approved Guideline. GP16- A3. 950 West Valley Road, Suite 2500, Wayne, PA 19087 USA, SLCI Clinical and Laboratory Standards Institute. 29.
dc.identifier.citedreferenceRaimondo, F., Cerra, D., Magni, F., & Pitto, M. ( 2016 ). Urinary proteomics for the study of genetic kidney diseases. Expert Review of Proteomics 13 ( 3 ), 309 - 324.
dc.identifier.citedreferenceRaimondo, F., Chinello, C., Porcaro, L., Magni, F., & Pitto, M. ( 2020 ). Urinary extracellular vesicles and salt- losing tubulopathies: A proteomic approach. Proteomes 8 ( 2 ), 9.
dc.identifier.citedreferenceRaimondo, F., Morosi, L., Corbetta, S., Chinello, C., Brambilla, P., Mina, P. D., Villa, A., Albo, G., Battaglia, C., Bosari, S., Magni, F., & Pitto, M. ( 2013 ). Differential protein profiling of renal cell carcinoma urinary exosomes. Molecular Biosystems 9 ( 6 ), 1220 - 1233.
dc.identifier.citedreferenceRansohoff, D. F., & Gourlay, M. L. ( 2010 ). Sources of bias in specimens for research about molecular markers for cancer. Journal of Clinical Oncology 28 ( 4 ), 698 - 704.
dc.identifier.citedreferenceRao, M. S., Van Vleet, T. R., Ciurlionis, R., Buck, W. R., Mittelstadt, S. W., Blomme, E. A. G., & Liguori, M. J. ( 2018 ). Comparison of RNA- Seq and microarray gene expression platforms for the toxicogenomic evaluation of liver from short- term rat toxicity studies. Frontiers in Genetics 9, 636.
dc.identifier.citedreferenceRatajczak, J., Miekus, K., Kucia, M., Zhang, J., Reca, R., Dvorak, P., & Ratajczak, M. Z. ( 2006 ). Embryonic stem cell- derived microvesicles reprogram hematopoietic progenitors: Evidence for horizontal transfer of mRNA and protein delivery. Leukemia 20 ( 5 ), 847 - 856.
dc.identifier.citedreferenceRayyan, M., Zheutlin, A., & Byrd, J. B. ( 2018 ). Clinical research using extracellular vesicles: Insights from the International Society for Extracellular Vesicles 2018 Annual Meeting. Journal of Extracellular Vesicles 7 ( 1 ), 1535744.
dc.identifier.citedreferenceRigau, M., Olivan, M., Garcia, M., Sequeiros, T., Montes, M., Colas, E., Llaurado, M., Planas, J., Torres, I., Morote, J., Cooper, C., Reventos, J., Clark, J., & Doll, A. ( 2013 ). The present and future of prostate cancer urine biomarkers. International Journal of Molecular Sciences 14 ( 6 ), 12620 - 12649.
dc.identifier.citedreferenceRikkert, L. G., de Rond, L., van Dam, A., van Leeuwen, T. G., Coumans, F. A. W., de Reijke, T. M., Terstappen, L., & Nieuwland, R. ( 2020 ). Detection of extracellular vesicles in plasma and urine of prostate cancer patients by flow cytometry and surface plasmon resonance imaging. PLoS One 15 ( 6 ), E0233443.
dc.identifier.citedreferenceRodriguez, M., Bajo- Santos, C., Hessvik, N. P., Lorenz, S., Fromm, B., Berge, V., Sandvig, K., Line, A., & Llorente, A. ( 2017 ). Identification of non- invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes. Molecular Cancer 16 ( 1 ), 156.
dc.identifier.citedreferenceRood, I. M., Deegens, J. K., Merchant, M. L., Tamboer, W. P., Wilkey, D. W., Wetzels, J. F., & Klein, J. B. ( 2010 ). Comparison of three methods for isolation of urinary microvesicles to identify biomarkers of nephrotic syndrome. Kidney International 78 ( 8 ), 810 - 816.
dc.identifier.citedreferenceRoyo, F., Diwan, I., Tackett, M. R., Zuniga, P., Sanchez- Mosquera, P., Loizaga- Iriarte, A., Ugalde- Olano, A., Lacasa, I., Perez, A., Unda, M., Carracedo, A., & Falcon- Perez, J. M. ( 2016 ). Comparative miRNA analysis of urine extracellular vesicles isolated through five different methods. Cancers 8 ( 12 ), E112.
dc.identifier.citedreferenceRoyo, F., Gil- Carton, D., Gonzalez, E., Mleczko, J., Palomo, L., Perez- Cormenzana, M., Mayo, R., Alonso, C., & Falcon- Perez, J. M. ( 2019 ). Differences in the metabolite composition and mechanical properties of extracellular vesicles secreted by hepatic cellular models. Journal of Extracellular Vesicles 8 ( 1 ), 1575678.
dc.identifier.citedreferenceRoyo, F., Zuniga- Garcia, P., Sanchez- Mosquera, P., Egia, A., Perez, A., Loizaga, A., Arceo, R., Lacasa, I., Rabade, A., Arrieta, E., Bilbao, R., Unda, M., Carracedo, A., & Falcon- Perez, J. M. ( 2016 ). Different EV enrichment methods suitable for clinical settings yield different subpopulations of urinary extracellular vesicles from human samples. Journal of Extracellular Vesicles 5, 29497.
dc.identifier.citedreferenceRoyo, F., Zuniga- Garcia, P., Torrano, V., Loizaga, A., Sanchez- Mosquera, P., Ugalde- Olano, A., Gonzalez, E., Cortazar, A. R., Palomo, L., Fernandez- Ruiz, S., Lacasa- Viscasillas, I., Berdasco, M., Sutherland, J. D., Barrio, R., Zabala- Letona, A., Martin- Martin, N., Arruabarrena- Aristorena, A., Valcarcel- Jimenez, L., Caro- Maldonado, A. - ¦ Carracedo, A. ( 2016 ). Transcriptomic profiling of urine extracellular vesicles reveals alterations of CDH3 in prostate cancer. Oncotarget 7 ( 6 ), 6835 - 6846.
dc.identifier.citedreferenceSaetun, P., Semangoen, T., & Thongboonkerd, V. ( 2009 ). Characterizations of urinary sediments precipitated after freezing and their effects on urinary protein and chemical analyses. American Journal of Physiology. Renal Physiology 296 ( 6 ), F1346 - 1354.
dc.identifier.citedreferenceSaliba, D. G., Cespedes- Donoso, P. F., Balint, S., Compeer, E. B., Korobchevskaya, K., Valvo, S., Mayya, V., Kvalvaag, A., Peng, Y., Dong, T., Tognoli, M. L., O’Neill, E., Bonham, S., Fischer, R., Kessler, B. M., & Dustin, M. L. ( 2019 ). Composition and structure of synaptic ectosomes exporting antigen receptor linked to functional CD40 ligand from helper T cells. Elife 8, e47528.
dc.identifier.citedreferenceSalih, M., Bovee, D. M., van der Lubbe, N., Danser, A. H. J., Zietse, R., Feelders, R. A., & Hoorn, E. J. ( 2018 ). Increased urinary extracellular vesicle sodium transporters in cushing syndrome with hypertension. Journal of Clinical Endocrinology and Metabolism 103 ( 7 ), 2583 - 2591.
dc.identifier.citedreferenceSalih, M., Demmers, J. A., Bezstarosti, K., Leonhard, W. N., Losekoot, M., van Kooten, C., Gansevoort, R. T., Peters, D. J., Zietse, R., Hoorn, E. J., & Consortium, D. ( 2016 ). Proteomics of urinary vesicles links plakins and complement to polycystic kidney disease. Journal of the American Society of Nephrology 27 ( 10 ), 3079 - 3092.
dc.identifier.citedreferenceSalih, M., Fenton, R. A., Knipscheer, J., Janssen, J. W., Vredenbregt- van den Berg, M. S., Jenster, G., Zietse, R., & Hoorn, E. J. ( 2016 ). An immunoassay for urinary extracellular vesicles. American Journal of Physiology. Renal Physiology 310 ( 8 ), F796 - F801.
dc.identifier.citedreferenceSamsonov, R., Shtam, T., Burdakov, V., Glotov, A., Tsyrlina, E., Berstein, L., Nosov, A., Evtushenko, V., Filatov, M., & Malek, A. ( 2016 ). Lectin- induced agglutination method of urinary exosomes isolation followed by mi- RNA analysis: Application for prostate cancer diagnostic. The Prostate 76 ( 1 ), 68 - 79.
dc.identifier.citedreferenceSantiago- Rodriguez, T. M., Ly, M., Bonilla, N., & Pride, D. T. ( 2015 ). The human urine virome in association with urinary tract infections. Frontiers in Microbiology 6, 14.
dc.identifier.citedreferenceSantucci, L., Bruschi, M., Del Zotto, G., Antonini, F., Ghiggeri, G. M., Panfoli, I., & Candiano, G. ( 2019 ). Biological surface properties in extracellular vesicles and their effect on cargo proteins. Scientific Reports 9 ( 1 ), 13048.
dc.identifier.citedreferenceSantucci, L., Candiano, G., Petretto, A., Bruschi, M., Lavarello, C., Inglese, E., Righetti, P. G., & Ghiggeri, G. M. ( 2015 ). From hundreds to thousands: Widening the normal human Urinome (1). Journal of Proteomics 112, 53 - 62.
dc.identifier.citedreferenceSaraswat, M., Joenvaara, S., Musante, L., Peltoniemi, H., Holthofer, H., & Renkonen, R. ( 2015 ). N- linked (N- ) glycoproteomics of urinary exosomes. [Corrected]. Molecular and Cellular Proteomics 14 ( 2 ), 263 - 276.
dc.identifier.citedreferenceScherberich, J. E. ( 1989 ). Immunological and ultrastructural analysis of loss of tubular membrane- bound enzymes in patients with renal damage. Clinica Chimica Acta 185 ( 3 ), 271 - 282.
dc.identifier.citedreferenceSequeiros, T., Rigau, M., Chiva, C., Montes, M., Garcia- Grau, I., Garcia, M., Diaz, S., Celma, A., Bijnsdorp, I., Campos, A., Di Mauro, P., Borros, S., Reventos, J., Doll, A., Paciucci, R., Pegtel, M., de Torres, I., Sabido, E., Morote, J., & Olivan, M. ( 2017 ). Targeted proteomics in urinary extracellular vesicles identifies biomarkers for diagnosis and prognosis of prostate cancer. Oncotarget 8 ( 3 ), 4960 - 4976.
dc.identifier.citedreferenceShoskes, D. A., Thomas, K. D., & Gomez, E. ( 2005 ). Anti- nanobacterial therapy for men with chronic prostatitis/chronic pelvic pain syndrome and prostatic stones: Preliminary experience. Journal of Urology 173 ( 2 ), 474 - 477.
dc.identifier.citedreferenceSilvers, C. R., Liu, Y. R., Wu, C. H., Miyamoto, H., Messing, E. M., & Lee, Y. F. ( 2016 ). Identification of extracellular vesicle- borne periostin as a feature of muscle- invasive bladder cancer. Oncotarget 7 ( 17 ), 23335 - 23345.
dc.identifier.citedreferenceSimeone, P., Bologna, G., Lanuti, P., Pierdomenico, L., Guagnano, M. T., Pieragostino, D., Del Boccio, P., Vergara, D., Marchisio, M., Miscia, S., & Mariani- Costantini, R. ( 2020 ). Extracellular Vesicles as Signaling Mediators and Disease Biomarkers across Biological Barriers. International Journal of Molecular Sciences 21 ( 7 ), 2514.
dc.identifier.citedreferenceSkotland, T., Ekroos, K., Kauhanen, D., Simolin, H., Seierstad, T., Berge, V., Sandvig, K., & Llorente, A. ( 2017 ). Molecular lipid species in urinary exosomes as potential prostate cancer biomarkers. European Journal of Cancer 70, 122 - 132.
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