Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)
dc.contributor.author | Leebens-Mack, Jim | en_US |
dc.contributor.author | Vision, Todd | en_US |
dc.contributor.author | Brenner, Eric | en_US |
dc.contributor.author | Bowers, John E. | en_US |
dc.contributor.author | Cannon, Steven | en_US |
dc.contributor.author | Clement, Mark J. | en_US |
dc.contributor.author | Cunningham, Clifford W. | en_US |
dc.contributor.author | DePamphilis, Claude | en_US |
dc.contributor.author | DeSalle, Rob | en_US |
dc.contributor.author | Doyle, Jeff J. | en_US |
dc.contributor.author | Eisen, Jonathan A. | en_US |
dc.contributor.author | Gu, Xun | en_US |
dc.contributor.author | Harshman, John | en_US |
dc.contributor.author | Jansen, Robert K. | en_US |
dc.contributor.author | Kellogg, Elizabeth A. | en_US |
dc.contributor.author | Koonin, Eugene V. | en_US |
dc.contributor.author | Mishler, Brent D. | en_US |
dc.contributor.author | Philippe, Hervé | en_US |
dc.contributor.author | Pires, J. Chris | en_US |
dc.contributor.author | Qiu, Yin-Long | en_US |
dc.contributor.author | Rhee, Seung Y. | en_US |
dc.contributor.author | Sjölander, Kimmen | en_US |
dc.contributor.author | Soltis, Douglas E. | en_US |
dc.contributor.author | Soltis, Pamela S. | en_US |
dc.contributor.author | Stevenson, Dennis W. | en_US |
dc.contributor.author | Wall, Kerr | en_US |
dc.contributor.author | Warnow, Tandy | en_US |
dc.contributor.author | Zmasek, Christian | en_US |
dc.date.accessioned | 2009-07-10T19:02:51Z | |
dc.date.available | 2009-07-10T19:02:51Z | |
dc.date.issued | 2006-06-01 | en_US |
dc.identifier.citation | Leebens-Mack, Jim; Vision, Todd; Brenner, Eric; Bowers, John E.; Cannon, Steven; Clement, Mark J.; Cunningham, Clifford W.; DePamphilis, Claude; DeSalle, Rob; Doyle, Jeff J.; Eisen, Jonathan A.; Gu, Xun; Harshman, John; Jansen, Robert K.; Kellogg, Elizabeth A.; Koonin, Eugene V.; Mishler, Brent D.; Philippe, Hervé; Pires, J. Chris; Qiu, Yin-Long; Rhee, Seung Y.; Sjölander, Kimmen; Soltis, Douglas E.; Soltis, Pamela S.; Stevenson, Dennis W.; Wall, Kerr; Warnow, Tandy; Zmasek, Christian (2006). "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)." OMICS: A Journal of Integrative Biology 10(2): 231-237 <http://hdl.handle.net/2027.42/63208> | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/63208 | |
dc.identifier.uri | http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=16901231&dopt=citation | en_US |
dc.description.abstract | In the eight years since phylogenomics was introduced as the intersection of genomics and phylogenetics, the field has provided fundamental insights into gene function, genome history and organismal relationships. The utility of phylogenomics is growing with the increase in the number and diversity of taxa for which whole genome and large transcriptome sequence sets are being generated. We assert that the synergy between genomic and phylogenetic perspectives in comparative biology would be enhanced by the development and refinement of minimal reporting standards for phylogenetic analyses. Encouraged by the development of the Minimum Information About a Microarray Experiment (MIAME) standard, we propose a similar roadmap for the development of a Minimal Information About a Phylogenetic Analysis (MIAPA) standard. Key in the successful development and implementation of such a standard will be broad participation by developers of phylogenetic analysis software, phylogenetic database developers, practitioners of phylogenomics, and journal editors. This paper is part of the special issue of OMICS on data standards. | en_US |
dc.format.extent | 142403 bytes | |
dc.format.extent | 2489 bytes | |
dc.format.mimetype | application/pdf | |
dc.format.mimetype | text/plain | |
dc.publisher | Mary Ann Liebert, Inc., publishers | en_US |
dc.title | Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA) | en_US |
dc.type | Article | en_US |
dc.subject.hlbtoplevel | Health Sciences | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.identifier.pmid | 16901231 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/63208/1/omi.2006.10.231.pdf | |
dc.identifier.doi | doi:10.1089/omi.2006.10.231 | en_US |
dc.identifier.source | OMICS: A Journal of Integrative Biology | en_US |
dc.identifier.source | OMICS: A Journal of Integrative Biology | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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