View Item 

Show simple item record

A guided tour of the Trans-Proteomic Pipeline

dc.contributor.authorDeutsch, Eric W.en_US
dc.contributor.authorMendoza, Luisen_US
dc.contributor.authorShteynberg, Daviden_US
dc.contributor.authorFarrah, Terryen_US
dc.contributor.authorLam, Henryen_US
dc.contributor.authorTasman, Natalieen_US
dc.contributor.authorSun, Zhien_US
dc.contributor.authorNilsson, Eriken_US
dc.contributor.authorPratt, Brianen_US
dc.contributor.authorPrazen, Bryanen_US
dc.contributor.authorEng, Jimmy K.en_US
dc.contributor.authorMartin, Daniel B.en_US
dc.contributor.authorNesvizhskii, Alexey I.en_US
dc.contributor.authorAebersold, Ruedien_US
dc.date.accessioned2010-04-14T20:03:12Z
dc.date.available2011-03-01T16:26:44Zen_US
dc.date.issued2010-03en_US
dc.identifier.citationDeutsch, Eric W.; Mendoza, Luis; Shteynberg, David; Farrah, Terry; Lam, Henry; Tasman, Natalie; Sun, Zhi; Nilsson, Erik; Pratt, Brian; Prazen, Bryan; Eng, Jimmy K.; Martin, Daniel B.; Nesvizhskii, Alexey I.; Aebersold, Ruedi (2010). "A guided tour of the Trans-Proteomic Pipeline." PROTEOMICS 10(6): 1150-1159. <http://hdl.handle.net/2027.42/69180>en_US
dc.identifier.issn1615-9853en_US
dc.identifier.issn1615-9861en_US
dc.identifier.urihttps://hdl.handle.net/2027.42/69180
dc.description.abstractThe Trans-Proteomic Pipeline (TPP) is a suite of software tools for the analysis of MS/MS data sets. The tools encompass most of the steps in a proteomic data analysis workflow in a single, integrated software system. Specifically, the TPP supports all steps from spectrometer output file conversion to protein-level statistical validation, including quantification by stable isotope ratios. We describe here the full workflow of the TPP and the tools therein, along with an example on a sample data set, demonstrating that the setup and use of the tools are straightforward and well supported and do not require specialized informatic resources or knowledge.en_US
dc.format.extent46513 bytes
dc.format.extent3118 bytes
dc.format.mimetypeapplication/pdf
dc.format.mimetypetext/plain
dc.publisherWILEY-VCH Verlagen_US
dc.subject.otherLife and Medical Sciencesen_US
dc.titleA guided tour of the Trans-Proteomic Pipelineen_US
dc.typeArticleen_US
dc.rights.robotsIndexNoFollowen_US
dc.subject.hlbsecondlevelBiological Chemistryen_US
dc.subject.hlbsecondlevelChemical Engineeringen_US
dc.subject.hlbsecondlevelChemistryen_US
dc.subject.hlbsecondlevelMaterials Science and Engineeringen_US
dc.subject.hlbsecondlevelMolecular, Cellular and Developmental Biologyen_US
dc.subject.hlbtoplevelHealth Sciencesen_US
dc.subject.hlbtoplevelScienceen_US
dc.subject.hlbtoplevelEngineeringen_US
dc.description.peerreviewedPeer Revieweden_US
dc.contributor.affiliationumDepartment of Pathology and Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USA ; Institute for Systems Biology, 1441 N 34th Street, Seattle, WA, 98103, USA Fax: +1-206-732-1260en_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USAen_US
dc.contributor.affiliationotherHong Kong University of Science and Technology, Clear Water Bay, Hong Kong, P. R. Chinaen_US
dc.contributor.affiliationotherInsilicos, LLC, Seattle, WA, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USAen_US
dc.contributor.affiliationotherInsilicos, LLC, Seattle, WA, USAen_US
dc.contributor.affiliationotherInsilicos, LLC, Seattle, WA, USAen_US
dc.contributor.affiliationotherInsilicos, LLC, Seattle, WA, USAen_US
dc.contributor.affiliationotherDepartment of Genome Sciences, University of Washington, Seattle, WA, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USAen_US
dc.contributor.affiliationotherInstitute for Systems Biology, Seattle, WA, USA ; Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland ; Faculty of Sciences, University of Zurich, Zurich, Switzerland ; Center for Systems Physiology and Metabolic Diseases, Zurich, Switzerlanden_US
dc.identifier.pmid20101611en_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/69180/1/pmic_200900375_sm_SupplInfo.pdf
dc.identifier.doi10.1002/pmic.200900375en_US
dc.identifier.sourcePROTEOMICSen_US
dc.owningcollnameInterdisciplinary and Peer-Reviewed


Files in this item

Name:
pmic_200900375_sm_SupplInfo.pdf
Size:
45.42KB
Format:
PDF
View/Open

Show simple item record

Remediation of Harmful Language

The University of Michigan Library aims to describe library materials in a way that respects the people and communities who create, use, and are represented in our collections. Report harmful or offensive language in catalog records, finding aids, or elsewhere in our collections anonymously through our metadata feedback form. More information at Remediation of Harmful Language.

Accessibility

If you are unable to use this file in its current format, please select the Contact Us link and we can modify it to make it more accessible to you.