Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation
dc.contributor.author | Yu, Rosa R. | en_US |
dc.contributor.author | DiRita, Victor J. | en_US |
dc.date.accessioned | 2010-06-01T18:17:24Z | |
dc.date.available | 2010-06-01T18:17:24Z | |
dc.date.issued | 2002-01 | en_US |
dc.identifier.citation | Yu, Rosa R . ; DiRita, Victor J . (2002). "Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation." Molecular Microbiology 43(1): 119-134. <http://hdl.handle.net/2027.42/71500> | en_US |
dc.identifier.issn | 0950-382X | en_US |
dc.identifier.issn | 1365-2958 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/71500 | |
dc.identifier.uri | http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=11849541&dopt=citation | en_US |
dc.description.abstract | Co-ordinate expression of many virulence genes in the human pathogen Vibrio cholerae is under the direct control of the ToxT protein, including genes whose products are required for the biogenesis of the toxin-co-regulated pilus (TCP) and cholera toxin (CTX). This work examined interactions between ToxT and the promoters of ctx and tcpA genes. We found that a minimum of three direct repeats of the sequence TTTTGAT is required for ToxT-dependent activation of the ctx promoter, and that the region from –85 to –41 of the tcpA promoter contains elements that are responsive to ToxT-dependent activation. The role of H-NS in transcription of ctx and tcpA was also analysed. The level of activation of ctx–lacZ in an E. coli hns – strain was greatly increased even in the absence of ToxT, and was further enhanced in the presence of ToxT. In contrast, H-NS plays a lesser role in the regulation of the tcpA promoter. Electrophoretic mobility shift assays demonstrated that 6 × His-tagged ToxT directly, and specifically, interacts with both the ctx and tcpA promoters. DNase I footprinting analysis suggests that there may be two ToxT binding sites with different affinity in the ctx promoter and that ToxT binds to –84 to –41 of the tcpA promoter. In vitro transcription experiments demonstrated that ToxT alone is able to activate transcription from both promoters. We hypothesize that under conditions appropriate for ToxT-dependent gene expression, ToxT binds to AT-rich promoters that may have a specific secondary conformation, displaces H-NS and stimulates RNA polymerase resulting in transcription activation. | en_US |
dc.format.extent | 280935 bytes | |
dc.format.extent | 3109 bytes | |
dc.format.mimetype | application/pdf | |
dc.format.mimetype | text/plain | |
dc.publisher | Blackwell Science Ltd. | en_US |
dc.rights | 2002 Blackwell Science Ltd. | en_US |
dc.title | Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation | en_US |
dc.type | Article | en_US |
dc.subject.hlbsecondlevel | Microbiology and Immunology | en_US |
dc.subject.hlbtoplevel | Science | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.contributor.affiliationum | Unit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA. | en_US |
dc.identifier.pmid | 11849541 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/71500/1/j.1365-2958.2002.02721.x.pdf | |
dc.identifier.doi | 10.1046/j.1365-2958.2002.02721.x | en_US |
dc.identifier.source | Molecular Microbiology | en_US |
dc.identifier.citedreference | Afflerbach, H., SchrÖder, O., Wagner, R. ( 1999 ) Conformational changes of the upstream DNA mediated by H-NS and FIS regulate E. coli rrnB P1 promoter activity. J Mol Biol 286: 339 – 353. | en_US |
dc.identifier.citedreference | Atlung, T. & Ingmer, H. ( 1997 ) H-NS: a modulator of environmentally regulated gene expression. Mol Microbiol 24: 7 – 17. | en_US |
dc.identifier.citedreference | Atlung, T., Sund, S., Olesen, K., BrØndsted, L. ( 1996 ) The histone-like protein H-NS acts as a transcriptional repressor for expression of the anaerobic and growth phase activator AppY of Escherichia Coli. J Bacteriol 178: 3418 – 3425. | en_US |
dc.identifier.citedreference | Betley, M.J., Miller, V.L., Mekalanos, J.J. ( 1986 ) Genetics of bacterial enterotoxins. Annu Rev Microbiol 40: 577 – 605. | en_US |
dc.identifier.citedreference | Bhende, P.M. & Egan, S.M. ( 2000 ) Genetic evidence that transcription activation by RhaS involves specific amino acid contacts with sigma 70. J Bacteriol 182: 4959 – 4969. | en_US |
dc.identifier.citedreference | Blomfield, I.C., McClain, M.S., Eisenstein, B.I. ( 1991 ) Type 1 fimbriae mutants of Escherichia coli K12: characterization of recognized afimbriate strains and construction of new fim deletion mutants. Mol Microbiol 5: 1439 – 1445. | en_US |
dc.identifier.citedreference | Brown, R.C. & Taylor, R.K. ( 1995 ) Organization of the tcp, acf and toxT genes within a ToxT-dependent operon. Mol Microbiol 16: 425 – 439. | en_US |
dc.identifier.citedreference | Busby, S. & Ebright, R.H. ( 1997 ) Transcription activation at class II CAP-dependent promoters. Mol Microbiol 23: 853 – 859. | en_US |
dc.identifier.citedreference | Busby, S. & Ebright, R.H. ( 1999 ) Transcription activation by catabolite activator protein (CAP). J Mol Biol 293: 199 – 213. | en_US |
dc.identifier.citedreference | Champion, G.A., Neely, M.N., Brennan, M.A., DiRita, V.J. ( 1997 ) A branch in the ToxR regulatory cascade of Vibrio cholerae revealed by characterization of toxT mutant strains. Mol Microbiol 23: 323 – 331. | en_US |
dc.identifier.citedreference | Coker, C., Bakare, O.O., Mobley, H.L.T. ( 2000 ) H-NS is a repressor of the Proteus mirabilis urease transcriptional activator gene ureR. J Bacteriol 182: 2649 – 2653. | en_US |
dc.identifier.citedreference | Dhiman, A. & Schleif, R. ( 2000 ) Recognition of over-lapping nucleotides by AraC and the sigma subunit of RNA polymerase. J Bacteriol 182: 5076 – 5081. | en_US |
dc.identifier.citedreference | Diekmann, S. ( 1986 ) Sequence specificity of curved DNA. FEBS Lett 195: 53 – 56. | en_US |
dc.identifier.citedreference | DiRita, V.J., Parsot, C., Jander, G., Mekalanos, J.J. ( 1991 ) Regulatory cascade controls virulence in Vibrio Cholerae. Proc Natl Acad Sci USA 88: 5403 – 5407. | en_US |
dc.identifier.citedreference | Ebright, R.H. ( 1993 ) Transcription activation at class I CAP-dependent promoters. Mol Microbiol 8: 797 – 802. | en_US |
dc.identifier.citedreference | Egan, S.M., Pease, A.J., Lang, J., Li, X., Rao, V., Gillette, W.K., et al. ( 2000 ) Transcription activation by a variety of AraC/XylS family activators does not depend on the class II-specific activation determinant in the N-terminal domain of the RNA polymerase alpha subunit. J Bacteriol 182: 7075 – 7077. | en_US |
dc.identifier.citedreference | Elliott, T. & Geiduscheck, E.P. ( 1984 ) Defining a bacteriophage T4 late promoter: absence of a ‘-35’ region. Cell 36: 211 – 219. | en_US |
dc.identifier.citedreference | Fawcett, W.P. & Wolf, R.E., Jr. ( 1995 ) Genetic definition of the Escherichia coli zwf ‘soxbox’, the DNA binding site for SoxS-mediated induction of glucose 6-phosphate dehydrogenase in response to superoxide. J Bacteriol 177: 1742 – 1750. | en_US |
dc.identifier.citedreference | Finkelstein, R.A. ( 1973 ) Cholera. CRC Crit Rev Microbiol 2: 553 – 623. | en_US |
dc.identifier.citedreference | Gallegos, M.-T., Schleif, R., Bairoch, A., Hofmann, K., Ramos, J.L. ( 1997 ) AraC/XylS family of transcriptional regulators. Microbiol Mol Biol Rev 61: 393 – 410. | en_US |
dc.identifier.citedreference | Gardel, C.L. & Mekalanos, J.J. ( 1994 ) Regulation of cholera toxin by temperature, pH and osmolarity. Methods Enzymol 235: 517 – 526. | en_US |
dc.identifier.citedreference | Gill, D.M. ( 1976 ) The arrangement of subunits in cholera toxin. Infect Immun 52: 1242 – 1248. | en_US |
dc.identifier.citedreference | Gupta, S. & Chowdhury, R. ( 1997 ) Bile affects production of virulence factors and motility of Vibrio Cholerae. Infect Immun 65: 1131 – 1134. | en_US |
dc.identifier.citedreference | HÄse, C.C. & Mekalanos, J.J. ( 1998 ) TcpP protein is a positive regulator of virulence gene expression in Vibrio Cholerae. Proc Natl Acad Sci USA 95: 730 – 734. | en_US |
dc.identifier.citedreference | Higgins, D.E. & DiRita, V.J. ( 1994 ) Transcriptional control of toxT, a regulatory gene in the ToxR regulon of Vibrio cholerae. Mol Microbiol 14: 17 – 29. | en_US |
dc.identifier.citedreference | Higgins, C.F., Dorman, C.J., Stirling, D.A., Waddell, L., Booth, I.R., May, G., Bremer, E. ( 1988 ) A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell 52: 569 – 584. | en_US |
dc.identifier.citedreference | Higgins, D.E., Nazareno, E., DiRita, V.J. ( 1992 ) The virulence gene activator ToxT from Vibrio cholerae is a member of the AraC family of transcriptional activators. J Bacteriol 174: 6974 – 6980. | en_US |
dc.identifier.citedreference | Jair, K.-W., Martin, R.G., Rosner, J.L., Fujita, N., Ishihama, A., Wolf, R.E. Jr ( 1995 ) Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters. J Bacteriol 177: 7100 – 7104. | en_US |
dc.identifier.citedreference | Jair, K.-W., Fawcett, W.P., Fujita, N., Ishihama, A., Wolf, R.E. Jr ( 1996a ) Ambidextrous transcriptional activation by SoxS: requirement for the C-terminal domain of the RNA polymerase alpha subunit in a subset of Escherichia coli superoxide-inducible genes. Mol Microbiol 19: 307 – 317. | en_US |
dc.identifier.citedreference | Jair, K.-W., Yu, X., Skarstad, K., Thony, B., Fujita, N., Ishihama, A., Wolf, R.E., Jr. ( 1996b ) Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication. J Bacteriol 178: 2507 – 2513. | en_US |
dc.identifier.citedreference | Jordi, B.J.A.M., Dagberg, B., de Haan, L.A.M., Hamers, A.M., van der Zeijst, B.A.M., Gaastra, W., Uhlin, B.E. ( 1992 ) The positive regulator CfaD overcomes the repression mediated by histone-like protein H-NS (H1) in the CFA/I fimbrial operon of Escherichia coli. EMBO J 11: 2627 – 2632. | en_US |
dc.identifier.citedreference | Kaldalu, N., Mandel, T., Ustav, M. ( 1996 ) TOL plasmid transcription factor XylS binds specifically to the P M operator sequence. Mol Microbiol 20: 569 – 579. | en_US |
dc.identifier.citedreference | Karaolis, D.K., Johnson, J.A., Bailey, C.C., Boedeker, E.C., Kaper, J.B., Reeves, P.R. ( 1998 ) A Vibrio cholerae pathogenicity island associated with epidemic and pandemic strains. Proc Natl Acad Sci USA 95: 3134 – 3139. | en_US |
dc.identifier.citedreference | Kaufman, M.R., Shaw, C.E., Jones, I.D., Taylor, R.K. ( 1993 ) Biogenesis and regulation of the Vibrio cholerae toxin-coregulated pilus: analogies to other virulence factor secretory systems. Gene 126: 43 – 49. | en_US |
dc.identifier.citedreference | Kolb, A., Busby, S., Buc, H., Garges, S., Adhya, S. ( 1993 ) Transcriptional regulation by cAMP and its receptor protein. Annu Rev Biochem 62: 749 – 795. | en_US |
dc.identifier.citedreference | Koo, H.-S., Wu, H.-M., Crothers, D.M. ( 1986 ) DNA bending at adenine: thymine tracts. Nature 320: 501 – 506. | en_US |
dc.identifier.citedreference | Krukonis, E.S., Yu, R.R., DiRita, V.J. ( 2000 ) The Vibrio cholerae ToxR/TcpP/ToxT virulence cascade: distinct roles for two membrane-localized transcriptional activators on a single promoter. Mol Microbiol 38: 67 – 84. | en_US |
dc.identifier.citedreference | Landini, P. & Busby, S.J.W. ( 1999 ) The Escherichia coli Ada protein can interact with two distinct determinants in the s 70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter. J Bacteriol 181: 1524 – 1529. | en_US |
dc.identifier.citedreference | Lee, S.H., Hava, D.L., Waldor, M.K., Camilli, A. ( 1999 ) Regulation and temporal expression patterns of Vibrio cholerae virulence genes during infection. Cell 99: 625 – 634. | en_US |
dc.identifier.citedreference | Li, C.C., Crawford, J.A., DiRita, V.J., Kaper, J.B. ( 2000 ) Molecular cloning and transcriptional regulation of ompT, a ToxR-repressed gene in Vibrio Cholerae. Mol Microbiol 35: 189 – 203. | en_US |
dc.identifier.citedreference | Linn, T. & Pierre, R.S. ( 1990 ) Improved vector system for constructing transcriptional fusions that ensure independ-ent translation of lacZ. J Bacteriol 172: 1077 – 1084. | en_US |
dc.identifier.citedreference | Martin, R.G., Gillette, W.K., Rhee, S., Rosner, J.L. ( 1999 ) Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter. Mol Microbiol 34: 431 – 441. | en_US |
dc.identifier.citedreference | Miller, J.H. ( 1972 ) Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press. | en_US |
dc.identifier.citedreference | Miller, V.L. & Mekalanos, J.J. ( 1984 ) Synthesis of cholera toxin is positively regulated at the transcriptional level by ToxR. Proc Natl Acad Sci USA 81: 3471 – 3475. | en_US |
dc.identifier.citedreference | Miller, V.L. & Mekalanos, J.J. ( 1988 ) A novel suicide vector and its use in construction of insertion mutations: osmo-regulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J Bacteriol 170: 2575 – 2583. | en_US |
dc.identifier.citedreference | Morales, V.M., Backman, A., Bagdasarian, M. ( 1991 ) A series of wide-host-range low-copy-number vectors that allow direct screening for recombinants. Gene 97: 39 – 47. | en_US |
dc.identifier.citedreference | Munson, G.P. & Scott, J.R. ( 1999 ) Binding site recognition by Rns, a virulence regulator in the AraC family. J Bacteriol 181: 2110 – 2117. | en_US |
dc.identifier.citedreference | Murphree, D., Froehlich, B., Scott, J.R. ( 1997 ) Transcriptional control of genes encoding CS1 pili: negative regulation by a silencer and positive regulation by Rns. J Bacteriol 179: 5736 – 5743. | en_US |
dc.identifier.citedreference | Nye, M.B., Pfau, J.D., Skorupski, K., Taylor, R.K. ( 2000 ) Vibrio cholerae H-NS silences virulence gene expression at multiple steps in the ToxR regulatory cascade. J Bacteriol 182: 4295 – 4303. | en_US |
dc.identifier.citedreference | Ogierman, M.A., Zabihi, S., Mourtzios, L., Manning, P.A. ( 1993 ) Genetic organization and sequence of the promoter-distal region of the tcp gene cluster of Vibrio Cholerae. Gene 126: 51 – 60. | en_US |
dc.identifier.citedreference | Parkinson, G., Wilson, C., Gunasekera, A., Ebright, Y., Ebright, R., Berman, H. ( 1996 ) Structure of the CAP-DNA complex at 2.5Å resolution. J Mol Biol 260: 395 – 408. | en_US |
dc.identifier.citedreference | Pearson, G.D. & Mekalanos, J.J. ( 1982 ) Molecular cloning of Vibrio cholerae enterotoxin genes in Escherichia coli K-12. Proc Natl Acad Sci USA 79: 2976 – 2980. | en_US |
dc.identifier.citedreference | PÉrez-MartÍn, J., de Rojo, F., Lorenzo, V. ( 1994 ) Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol Rev 58: 268 – 290. | en_US |
dc.identifier.citedreference | Peterson, K.M. & Mekalanos, J.J. ( 1988 ) Characterization of the Vibrio cholerae ToxR regulon: identification of novel genes involved in intestinal colonization [published erratum appears in Infect Immun 1989, February; 57 (2): 660]. Infect Immun 56: 2822 – 2829. | en_US |
dc.identifier.citedreference | Pfau, J.D. & Taylor, R.K. ( 1996 ) Genetic footprint of the ToxR-binding site in the promoter for cholera toxin. Mol Microbiol 20: 213 – 222. | en_US |
dc.identifier.citedreference | Reeder, T. & Schleif, R. ( 1993 ) AraC protein can activate transcription from only one position and when pointed in only one direction. J Mol Biol 231: 205 – 218. | en_US |
dc.identifier.citedreference | Rhee, S., Martin, R.G., Rosner, J.L., Davies, D.R. ( 1998 ) A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator. Proc Natl Acad Sci USA 95: 10413 – 10418. | en_US |
dc.identifier.citedreference | Rimsky, S. & Spassky, A. ( 1990 ) Sequence determinants for H1 binding on Escherichia coli lac and gal promoters. Biochemistry 29: 3765 – 3771. | en_US |
dc.identifier.citedreference | Sambrook, J., Fritsch, E.F., Maniatis, T. ( 1989 ). Mole-cular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press. | en_US |
dc.identifier.citedreference | Schuhmacher, D.A. & Klose, K.E. ( 1999 ) Environmental signals modulate ToxT-dependent virulence factor expression in Vibrio Cholerae. J Bacteriol 181: 1508 – 1514. | en_US |
dc.identifier.citedreference | Schultz, S., Shields, G., Steitz, T. ( 1991 ) Crystal structure of a CAP-DNA complex: the DNA is bent by 90°. Science 253: 1001 – 1007. | en_US |
dc.identifier.citedreference | Skorupski, K. & Taylor, R.K. ( 1997 ) Control of the ToxR virulence regulon in Vibrio cholerae by environmental stimuli. Mol Microbiol 25: 1003 – 1009. | en_US |
dc.identifier.citedreference | Taylor, R.K., Miller, V.L., Furlong, D.B., Mekalanos, J.J. ( 1987 ) Use of phoA gene fusions to identify a pilus colonization factor coordinately regulated with cholera toxin. Proc Natl Acad Sci USA 84: 2833 – 2837. | en_US |
dc.identifier.citedreference | Thomas, V.J. & Collins, C.M. ( 1999 ) Identification of UreR binding sites in the Enterobacteriaceae plasmid-encoded and Proteus mirabilis urease gene operons. Mol Microbiol 31: 1417 – 1428. | en_US |
dc.identifier.citedreference | Tobe, T., Yoshikawa, M., Mizuno, T., Sasakawa, C. ( 1993 ) Transcriptional control of the invasion regulatory gene virB of Shigella flexneri: activation by VirF and repression by H-NS. J Bacteriol 175: 6142 – 6149. | en_US |
dc.identifier.citedreference | Wattiau, P. & Cornelis, G.R. ( 1994 ) Identification of DNA sequences recognized by VirF, the transcriptional activator of the Yersinia yop regulon. J Bacteriol 176: 3878 – 3884. | en_US |
dc.identifier.citedreference | Williams, R.M. & Rimsky, S. ( 1997 ) Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networks. FEMS Microbiol Lett 156: 175 – 185. | en_US |
dc.identifier.citedreference | Yu, R.R. & DiRita, V.J. ( 1999 ) Analysis of an auto-regulatory loop controlling ToxT, cholera toxin and toxin-coregulated pilus production in Vibrio cholerae. J Bacteriol 181: 2584 – 2592. | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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