Shifting distributions and speciation: species divergence during rapid climate change
dc.contributor.author | Carstens, Bryan C. | en_US |
dc.contributor.author | Knowles, L. Lacey | en_US |
dc.date.accessioned | 2010-06-01T22:36:57Z | |
dc.date.available | 2010-06-01T22:36:57Z | |
dc.date.issued | 2007-02 | en_US |
dc.identifier.citation | CARSTENS, BRYAN C.; KNOWLES, L. LACEY (2007). "Shifting distributions and speciation: species divergence during rapid climate change." Molecular Ecology 16(3): 619-627. <http://hdl.handle.net/2027.42/75592> | en_US |
dc.identifier.issn | 0962-1083 | en_US |
dc.identifier.issn | 1365-294X | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/75592 | |
dc.identifier.uri | http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17257117&dopt=citation | en_US |
dc.description.abstract | Questions about how shifting distributions contribute to species diversification remain virtually without answer, even though rapid climate change during the Pleistocene clearly impacted genetic variation within many species. One factor that has prevented this question from being adequately addressed is the lack of precision associated with estimates of species divergence made from a single genetic locus and without incorporating processes that are biologically important as populations diverge. Analysis of DNA sequences from multiple variable loci in a coalescent framework that (i) corrects for gene divergence pre-dating speciation, and (ii) derives divergence-time estimates without making a priori assumptions about the processes underlying patterns of incomplete lineage sorting between species (i.e. allows for the possibility of gene flow during speciation), is critical to overcoming the inherent logistical and analytical difficulties of inferring the timing and mode of speciation during the dynamic Pleistocene. Estimates of species divergence that ignore these processes, use single locus data, or do both can dramatically overestimate species divergence. For example, using a coalescent approach with data from six loci, the divergence between two species of montane Melanoplus grasshoppers is estimated at between 200 000 and 300 000 years before present, far more recently than divergence estimates made using single-locus data or without the incorporation of population-level processes. Melanoplus grasshoppers radiated in the sky islands of the Rocky Mountains, and the analysis of divergence between these species suggests that the isolation of populations in multiple glacial refugia was an important factor in promoting speciation. Furthermore, the low estimates of gene flow between the species indicate that reproductive isolation must have evolved rapidly for the incipient species boundaries to be maintained through the subsequent glacial periods and shifts in species distributions. | en_US |
dc.format.extent | 179448 bytes | |
dc.format.extent | 3109 bytes | |
dc.format.mimetype | application/pdf | |
dc.format.mimetype | text/plain | |
dc.publisher | Blackwell Publishing Ltd | en_US |
dc.rights | © 2006 The Authors Journal compilation © 2006 Blackwell Publishing Ltd | en_US |
dc.subject.other | Climate Change | en_US |
dc.subject.other | Divergence Time | en_US |
dc.subject.other | Glacial Cycles | en_US |
dc.subject.other | Pleistocene | en_US |
dc.subject.other | Speciation | en_US |
dc.title | Shifting distributions and speciation: species divergence during rapid climate change | en_US |
dc.type | Article | en_US |
dc.subject.hlbsecondlevel | Ecology and Evolutionary Biology | en_US |
dc.subject.hlbtoplevel | Science | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.identifier.pmid | 17257117 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/75592/1/j.1365-294X.2006.03167.x.pdf | |
dc.identifier.doi | 10.1111/j.1365-294X.2006.03167.x | en_US |
dc.identifier.source | Molecular Ecology | en_US |
dc.identifier.citedreference | Andersson M ( 1994 ) Sexual Selection. Princeton University Press, Princeton, New Jersey. | en_US |
dc.identifier.citedreference | Arbogast BS, Slowinski JB ( 1998 ) Pleistocene speciation and the mitochondrial DNA clock. Science, 282, 1955a. | en_US |
dc.identifier.citedreference | Arbogast BS, Edwards SV, Wakeley J, Beerli P, Slowinski JB ( 2002 ) Estimating divergence times from molecular data on phylogenetic and population genetic timescales. Annual Review of Ecology and Systematics, 33, 707 – 740. | en_US |
dc.identifier.citedreference | Avise JC, Walker D ( 1998 ) Pleistocene phylogeographic effects on avian populations and the speciation process. Proceedings of the Royal Society of London. Series B, Biological Sciences, 265, 457 – 463. | en_US |
dc.identifier.citedreference | Avise JC, Walker D, Johns GC ( 1998 ) Species durations and Pleistocene effects on vertebrate phylogeography. Proceedings of the Royal Society of London. Series B, Biological Sciences, 265, 1707 – 1712. | en_US |
dc.identifier.citedreference | Barnola J-M, Raynaud D, Lorius C, Barkov NI ( 2003 ) In: Trends: A Compendium of Data on Global Change. Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee. | en_US |
dc.identifier.citedreference | Beerli P ( 2002 ) migrate: documentation and program, part of lamarc. Version. 1.5. URL: http://evolution.genetics.washington.edu/lamarc.html. | en_US |
dc.identifier.citedreference | Bella JL, Butlin RK, Ferris C, Hewitt GM ( 1992 ) Asymmetrical homogamy and unequal sex ratio from reciprocal mating-order crosses between Chorthippus parallelus subspecies. Heredity, 68, 345 – 352. | en_US |
dc.identifier.citedreference | Booth DB, Troost KG, Clague JJ, Waitt RB ( 2004 ) The Cordilleran Ice Sheet. In: The Quaternary Period in the United States (eds Gillespie AR, Porter SC, Atwater BF ). Elsevier Press, New York. | en_US |
dc.identifier.citedreference | Brower AVZ ( 1994 ) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences, USA, 91, 6491 – 6495. | en_US |
dc.identifier.citedreference | Carstens BC, Knowles LL ( 2006 ) Variable nuclear markers for Melanoplus oregonensis identified from the screening of a genomic library. Molecular Ecology Notes, 6, 683 – 685. | en_US |
dc.identifier.citedreference | Davis MB, Shaw RG ( 2001 ) Range shifts and adaptive responses to Quaternary Climate Change. Science, 292, 673 – 679. | en_US |
dc.identifier.citedreference | DeChaine EG, Martin AP ( 2004 ) Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA. Evolution, 58, 113 – 127. | en_US |
dc.identifier.citedreference | Eberhard WG ( 1993 ) Evaluating models of sexual selection: genitalia as a test case. American Naturalist, 142, 564 – 571. | en_US |
dc.identifier.citedreference | Eberhard WG ( 1996 ) Female Control: Sexual Selection by Cryptic Female Choice. Princeton University Press, Princeton, New Jersey. | en_US |
dc.identifier.citedreference | Edwards SV, Beerli P ( 2000 ) Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution, 54, 1839 – 1854. | en_US |
dc.identifier.citedreference | Elias SA ( 1996 ) The Ice Age History of National Parks in the Rocky Mountains. Smithsonian Institution Press, Washington, DC. | en_US |
dc.identifier.citedreference | Gates DM ( 1993 ) Climate Change and Its Biological Consequences. Sinauer and Associates, Sunderland, Massachusetts. | en_US |
dc.identifier.citedreference | Gibbard P, Van Kolfschoten T ( 2004 ) The Pleistocene and Holocene Epochs. In: A Geologic Time Scale (eds Gradstein FM, Ogg JG, Smith AG ). Cambridge University Press, Cambridge, UK. | en_US |
dc.identifier.citedreference | Goropashnaya AV, Federov VB, Pamilo P ( 2004 ) Recent speciation in the Formica rufa group ants (Hymenoptera, Formicidae): inference from mitochondrial DNA phylogeny. Molecular Phylogenetics and Evolution, 32, 198 – 206. | en_US |
dc.identifier.citedreference | Hewitt GM ( 1996 ) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247 – 276. | en_US |
dc.identifier.citedreference | Hey J ( 2005 ) On the number of new world founders: a population genetic portrait of the peopling of the Americas. PloS Biology, 3, 965 – 975. | en_US |
dc.identifier.citedreference | Hey J, Nielsen R ( 2004 ) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747 – 760. | en_US |
dc.identifier.citedreference | Hey J, Wakeley J ( 1997 ) A coalescent estimator of the population recombination rate. Genetics, 145, 833 – 846. | en_US |
dc.identifier.citedreference | Hickerson MJ, Meyer CP, Moritz C ( 2006 ) DNA-barcoding will fail to discover animal species. Systematic Biology, 5, 729 – 739. | en_US |
dc.identifier.citedreference | Hudson RR ( 1990 ) Gene genealogies and the coalescent process. In: Oxford Survey Evolutionary Biology (eds Futuyma D, Antonovics J ). Oxford University Press, New York. | en_US |
dc.identifier.citedreference | Hudson RR, Coyne JA ( 2002 ) Mathematical consequences of the genealogical species concept. Evolution, 56, 1557 – 1565. | en_US |
dc.identifier.citedreference | Hudson RR, Turelli M ( 2003 ) Stochasticity overrules the ‘three-times’ rule: genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution, 57, 182 – 190. | en_US |
dc.identifier.citedreference | Johnson NK, Cicero C ( 2004 ) New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds. Evolution, 58, 1122 – 1130. | en_US |
dc.identifier.citedreference | Klicka J, Zink RM ( 1997 ) The importance of recent ice ages in speciation: a failed paradigm. Science, 277, 1666 – 1669. | en_US |
dc.identifier.citedreference | Klicka J, Zink RM ( 1998 ) Response: Pleistocene speciation and the mitochondrial DNA clock. Science, 282, 1955a. | en_US |
dc.identifier.citedreference | Knowles LL ( 2000 ) Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus ) from the sky islands of western North America. Evolution, 54, 1337 – 1348. | en_US |
dc.identifier.citedreference | Knowles LL ( 2001a ) Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshoppers. Molecular Ecology, 10, 691 – 701. | en_US |
dc.identifier.citedreference | Knowles LL ( 2001b ) Genealogical portraits of speciation in montane grasshoppers (genus Melanoplus ) from the sky islands of the Rocky Mountains. Proceedings of the Royal Society of London. Series B, Biological Sciences, 268, 319 – 324. | en_US |
dc.identifier.citedreference | Knowles LL ( 2004 ) The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17, 1 – 10. | en_US |
dc.identifier.citedreference | Knowles LL, Maddison WP ( 2002 ) Statisical phylogeography. Molecular Ecology, 11, 2623 – 2635. | en_US |
dc.identifier.citedreference | Knowles LL, Otte D ( 2000 ) Phylogenetic analysis of montane grasshoppers from western North America (genus Melanoplus, Acrididae, Melanoplinae). Annals of the Entomological Society of America, 93, 421 – 431. | en_US |
dc.identifier.citedreference | Knowles LL, Richards CL ( 2005 ) Importance of genetic drift during Pleistocene divergence as revealed by analyses of genomic variation. Molecular Ecology, 14, 4023 – 4032. | en_US |
dc.identifier.citedreference | Kuhner MK, Yamato J, Beerli P et al. ( 2005 ) lamarc version 2.0. Available at http://evolution.gs.washington.edu/lamarc.html. | en_US |
dc.identifier.citedreference | Maddison WP ( 1997 ) Gene trees in species trees. Systematic Biology, 46, 523 – 536. | en_US |
dc.identifier.citedreference | Maddison WP, Knowles LL ( 2006 ) Inferring phylogeny despite incomplete lineage sorting. Systematic Biology, 55, 21 – 30. | en_US |
dc.identifier.citedreference | Maddison WP, Maddison DR ( 2004 ) mesquite: A modular system for evolutionary analysis. Version 1. 01. Available at http://mesquiteproject.org | en_US |
dc.identifier.citedreference | Minin V, Abdo Z, Joyce P, Sullivan J ( 2003 ) Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology, 52, 674 – 683. | en_US |
dc.identifier.citedreference | Nei M, Li W-H ( 1979 ) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA, 76, 5269 – 5273. | en_US |
dc.identifier.citedreference | Nielsen R, Wakeley J ( 2001 ) Distinguishing migration from isolation: a Markov-chain Monte Carlo approach. Genetics, 158, 885 – 896. | en_US |
dc.identifier.citedreference | Pielou EC ( 1991 ) After the Ice Age: The Return of Life to Glaciated North America. University of Chicago Press, Chicago. | en_US |
dc.identifier.citedreference | Pierce KL ( 2004 ) Pleistocene glaciations of the Rocky Mountains. In: The Quaternary Period in the United States (eds Gillespie AR, Porter SC, Atwater BF ). Elsevier Press, New York. | en_US |
dc.identifier.citedreference | Price CSC ( 1997 ) Conspecific sperm preference in Drosophila. Nature, 388, 663 – 666. | en_US |
dc.identifier.citedreference | Rosen S, Skaletsky HJ ( 2000 ) primer 3 on the WWW for general users and biologist programmers. Available at http://frodo.wi.mit.edu/primer3/primer3_code.html. | en_US |
dc.identifier.citedreference | Schneider S, Roessli D, Excoffier L ( 2000 ) arlequin: A software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland. Available at http://anthro.unige.ch/arlequin. | en_US |
dc.identifier.citedreference | Swofford DL ( 2002 ) paup*. Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4. Sinauer and Associates, Sunderland, Massachusetts. | en_US |
dc.identifier.citedreference | Swofford D, Olsen G, Waddell P, Hillis D ( 1996 ) Phylogenetic inference. In: Molecular Systematics (eds Hillis DM, Moritz C, Mable BK ), pp. 407 – 514. Sinauer and Associates, Sunderland, Massachusetts. | en_US |
dc.identifier.citedreference | Tajima F ( 1989 ) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 – 595. | en_US |
dc.identifier.citedreference | Thompson RS, Shafer SL, Strickland LE, Van de Water PK, Anderson KH ( 2004 ) Quaternary vegetation and climate change in the western United States. In: The Quaternary Period in the United States (eds Gillespie AR, Porter SC, Atwater BF ). Elsevier Press, New York. | en_US |
dc.identifier.citedreference | Wakeley J, Hey J ( 1997 ) Estimating ancestral population parameters. Genetics, 145, 847 – 855. | en_US |
dc.identifier.citedreference | Wakeley J, Nielsen R, Liu-Cordero SN, Ardlie K ( 2001 ) The discovery of single-nucleotide polymorphisms and inferences about human demographic history. American Journal of Human Genetics, 69, 1332 – 1347. | en_US |
dc.identifier.citedreference | Webb III, Shuman TB, Williams JW ( 2004 ) Climatically forced vegetation dynamics in eastern North America during the late Quaternary Period. In: The Quaternary Period in the United States (eds Gillespie AR, Porter SC, Atwater BF ). Elsevier Press, New York. | en_US |
dc.identifier.citedreference | Weir JT, Schluter D ( 2004 ) Ice sheets promote speciation in boreal birds. Proceedings of the Royal Society of London. Series B, Biological Sciences, 271, 1881 – 1887. | en_US |
dc.identifier.citedreference | Won Y-J, Hey J ( 2005 ) Divergence population genetics of chimpanzees. Molecular Biology and Evolution, 22, 297 – 307. | en_US |
dc.identifier.citedreference | Wu C-I ( 2001 ) The genic view of the process of speciation. Journal of Evolutionary Biology, 14, 851 – 865. | en_US |
dc.identifier.citedreference | Yang Z, Goldman N, Friday A ( 1994 ) Comparison of models for nucleotide substution used in maximum-likelihood phylogenetic estimation. Molecular Biology and Evolution, 11, 316 – 324. | en_US |
dc.identifier.citedreference | Zink RM, Klicka J, Barber BR ( 2004 ) The tempo of avian diversification during the Quaternary. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 359, 215 – 220. | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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