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Cyanobacterial life at low O 2 : community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat
dc.contributor.authorVoorhies, A. A.en_US
dc.contributor.authorBiddanda, B. A.en_US
dc.contributor.authorKendall, S. T.en_US
dc.contributor.authorJain, S.en_US
dc.contributor.authorMarcus, D. N.en_US
dc.contributor.authorNold, S. C.en_US
dc.contributor.authorSheldon, Nathan D.en_US
dc.contributor.authorDick, G. J.en_US
dc.date.accessioned2012-04-04T18:42:31Z
dc.date.available2013-06-11T19:15:41Zen_US
dc.date.issued2012-05en_US
dc.identifier.citationVoorhies, A. A. ; Biddanda, B. A. ; Kendall, S. T. ; Jain, S. ; Marcus, D. N. ; Nold, S. C. ; Sheldon, N. D. ; Dick, G. J. (2012). "Cyanobacterial life at low O 2 : community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole mat." Geobiology 10(3). <http://hdl.handle.net/2027.42/90535>en_US
dc.identifier.issn1472-4677en_US
dc.identifier.issn1472-4669en_US
dc.identifier.urihttps://hdl.handle.net/2027.42/90535
dc.description.abstractCyanobacteria are renowned as the mediators of Earth’s oxygenation. However, little is known about the cyanobacterial communities that flourished under the low‐O 2 conditions that characterized most of their evolutionary history. Microbial mats in the submerged Middle Island Sinkhole of Lake Huron provide opportunities to investigate cyanobacteria under such persistent low‐O 2 conditions. Here, venting groundwater rich in sulfate and low in O 2 supports a unique benthic ecosystem of purple‐colored cyanobacterial mats. Beneath the mat is a layer of carbonate that is enriched in calcite and to a lesser extent dolomite. In situ benthic metabolism chambers revealed that the mats are net sinks for O 2 , suggesting primary production mechanisms other than oxygenic photosynthesis. Indeed, 14 C‐bicarbonate uptake studies of autotrophic production show variable contributions from oxygenic and anoxygenic photosynthesis and chemosynthesis, presumably because of supply of sulfide. These results suggest the presence of either facultatively anoxygenic cyanobacteria or a mix of oxygenic/anoxygenic types of cyanobacteria. Shotgun metagenomic sequencing revealed a remarkably low‐diversity mat community dominated by just one genotype most closely related to the cyanobacterium Phormidium autumnale , for which an essentially complete genome was reconstructed. Also recovered were partial genomes from a second genotype of Phormidium and several Oscillatoria . Despite the taxonomic simplicity, diverse cyanobacterial genes putatively involved in sulfur oxidation were identified, suggesting a diversity of sulfide physiologies. The dominant Phormidium genome reflects versatile metabolism and physiology that is specialized for a communal lifestyle under fluctuating redox conditions and light availability. Overall, this study provides genomic and physiologic insights into low‐O 2 cyanobacterial mat ecosystems that played crucial geobiological roles over long stretches of Earth history.en_US
dc.publisherBlackwell Publishing Ltden_US
dc.publisherWiley Periodicals, Inc.en_US
dc.titleCyanobacterial life at low O 2 : community genomics and function reveal metabolic versatility and extremely low diversity in a Great Lakes sinkhole maten_US
dc.typeArticleen_US
dc.rights.robotsIndexNoFollowen_US
dc.subject.hlbsecondlevelGeology and Earth Sciencesen_US
dc.subject.hlbsecondlevelEcology and Evolutionary Biologyen_US
dc.subject.hlbtoplevelScienceen_US
dc.description.peerreviewedPeer Revieweden_US
dc.contributor.affiliationumDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USAen_US
dc.contributor.affiliationumCenter for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USAen_US
dc.contributor.affiliationumDeptartment of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USAen_US
dc.contributor.affiliationotherBiology Department, University of Wisconsin‐Stout, Menomonie, WI, USAen_US
dc.contributor.affiliationotherAnnis Water Resources Institute, Grand Valley State University, Muskegon, MI, USAen_US
dc.identifier.pmid22404795en_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/90535/1/j.1472-4669.2012.00322.x.pdf
dc.identifier.doi10.1111/j.1472-4669.2012.00322.xen_US
dc.identifier.sourceGeobiologyen_US
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