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Fluorescence excitation and imaging of single molecules near dielectric‐coated and bare surfaces: a theoretical study

dc.contributor.authorAxelrod, Danielen_US
dc.date.accessioned2012-08-09T14:56:02Z
dc.date.available2013-10-01T17:06:32Zen_US
dc.date.issued2012-08en_US
dc.identifier.citationAxelrod, Daniel (2012). "Fluorescence excitation and imaging of single molecules near dielectricâ coated and bare surfaces: a theoretical study." Journal of Microscopy 247(2). <http://hdl.handle.net/2027.42/92412>en_US
dc.identifier.issn0022-2720en_US
dc.identifier.issn1365-2818en_US
dc.identifier.urihttps://hdl.handle.net/2027.42/92412
dc.publisherBlackwell Publishing Ltden_US
dc.publisherWiley Periodicals, Inc.en_US
dc.subject.otherTotal Internal Reflectionen_US
dc.subject.otherFluorescence Microscopyen_US
dc.subject.otherHigh Apertureen_US
dc.subject.otherMolecular Orientationen_US
dc.subject.otherPolarizationen_US
dc.subject.otherPoint Spread Functionen_US
dc.subject.otherThin Filmsen_US
dc.titleFluorescence excitation and imaging of single molecules near dielectric‐coated and bare surfaces: a theoretical studyen_US
dc.typeArticleen_US
dc.rights.robotsIndexNoFollowen_US
dc.subject.hlbsecondlevelScience (General)en_US
dc.subject.hlbtoplevelScienceen_US
dc.description.peerreviewedPeer Revieweden_US
dc.contributor.affiliationumDepartments of Physics, Biophysics, and Pharmacology,
University of Michigan, Ann Arbor, Michigan, U.S.A.en_US
dc.identifier.pmid22612666en_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/92412/1/j.1365-2818.2012.03625.x.pdf
dc.identifier.doi10.1111/j.1365-2818.2012.03625.xen_US
dc.identifier.sourceJournal of Microscopyen_US
dc.identifier.citedreferenceLieb, M.A., Zavislan, J.M. & Novotny, L. ( 2004 ) Single‐molecule orientations determined by direct emission pattern imaging. J. Opt. Soc. Am. B 21, 1210 – 1215.en_US
dc.identifier.citedreferenceFourkas, J.T. ( 2001 ) Rapid determination of the three‐dimensional orientation of single molecules. Opt. Lett. 26, 211 – 213.en_US
dc.identifier.citedreferenceGoodman, J.W. ( 1968 ) Introduction to Fourier Optics. McGraw‐Hill, New York.en_US
dc.identifier.citedreferenceGu, M. ( 2000 ) Advanced Optical Imaging Theory. Springer Verlag, Berlin.en_US
dc.identifier.citedreferenceHellen, E.H. & Axelrod, D. ( 1987 ) Fluorescence emission at dielectric and metal‐film interfaces. J. Opt. Soc. Am. B 4, 337 – 350.en_US
dc.identifier.citedreferenceHohlbein, J. & Hübner, C.G. ( 2008 ) Three‐dimensional orientation determination of the emission dipoles of single molecules: the shot‐noise limit. J. Chem. Phys. 129, 094703/1–8.en_US
dc.identifier.citedreferenceIshitobi, H., Nakamura, I., Hayazawa, N., Sekkat, Z. & Kawata, S. ( 2010 ) Orientational imaging of single molecules by using azimuthal and radial polarizations. J. Phys. Chem. B 114, 2565 – 2571.en_US
dc.identifier.citedreferenceKaiser, R., Lévy, Y., Vansteenkiste, N., Aspect, A., Seifert, W., Leipold, D. & Mlynek, J. ( 1994 ) Resonant enhancement of evanescent waves with a thin dielectric waveguide. Opt. Comm. 104, 234 – 240.en_US
dc.identifier.citedreferenceKe, P.C., Gan, X.S., Szajman J., Schilders, S. & Guy, M. ( 1997 ) Optimizing the strength of an evanescent wave generated from a prism coated with a double‐layer thin‐film stack. Bioimaging 5, 1 – 8.en_US
dc.identifier.citedreferenceLe Moala, E., Forta, E., Lévêque‐For, S., Cordelièresc, F.P., Fontaine‐Aupart, M.‐P. & Ricolleaua, C. ( 2007 ) Enhanced fluorescence cell imaging with metal‐coated slides. Biophys. J. 92, 2150 – 2161.en_US
dc.identifier.citedreferenceMattheyses, A.L. & Axelrod, D. ( 2005 ) Fluorescence emission patterns near glass and metal‐coated surfaces investigated with back focal plane imaging. J. Biomed. Opt. 10, 054007/1–6.en_US
dc.identifier.citedreferenceMertz, J. ( 2000 ) Radiative absorption, fluorescence, and scattering of a classical dipole near a lossless interface: a unified description. J. Opt. Soc. Am. B 17, 1906 – 1913.en_US
dc.identifier.citedreferenceNesnidal R.C. & Walker, T.G. ( 1996 ) Multilayer dielectric structure for enhancement of evanescent waves. Appl. Opt. 35, 2226 – 2229.en_US
dc.identifier.citedreferenceOheim, M., Loerke, D., Preitz, B. & Stuhmer, W. ( 1998 ) A simple optical configuration for depth‐resolved imaging using variable angle evanescent‐wave microscopy. SPIE 3568, 131 – 140.en_US
dc.identifier.citedreferenceÖlveczky, B.P., Periasamy, N. & Verkman, A.S. ( 1997 ) Mapping fluorophore distributions in three dimensions by quantitative multiple angle‐total internal reflection fluorescence microscopy. Biophys. J. 73, 2836 – 2847.en_US
dc.identifier.citedreferencePatra, D., Gregor, I. & Enderlein, J. ( 2004 ) Image analysis of defocused single‐molecule images for three‐dimensional molecule orientation studies. J. Phys. Chem. A 108, 6836 – 6841.en_US
dc.identifier.citedreferencePavani, S.R.P., Thompson, M.A., Biteen, J.S., Lord, S.J., Liu, N., Twieg, R.J., Piestun, R. & Moerner, W.E. ( 2009 ) Three‐dimensional, single‐molecule fluorescence imaging beyond the diffraction limit by using a double‐helix point spread function. Proc. Natl. Acad. Sci. USA 106, 2995 – 2999.en_US
dc.identifier.citedreferencePolerecky', L., Hamrle, J. & MacCraith, B.D. ( 2000 ) Theory of the radiation of dipoles placed within a multilayer system. Appl. Opt. 39, 3968 – 3977.en_US
dc.identifier.citedreferenceRuckstuhl, T. & Verdes, D. ( 2004 ) Supercritical angle fluorescence (SAF) microscopy. Opt. Express 12, 4246 – 4254.en_US
dc.identifier.citedreferenceRust, M.J., Bates, M. & Zhuang, X. ( 2006 ) Sub‐diffraction‐limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3, 793 – 795.en_US
dc.identifier.citedreferenceSikorski, Z. & Davis, L.M. ( 2008 ) Engineering the collected field for single molecule orientation determination. Opt. Express 16, 3660 – 3673.en_US
dc.identifier.citedreferenceWood, B., Pendry, J.B. & Tsai, D.P. ( 2006 ) Directed subwavelength imaging using a layered metal‐dielectric system. Phys. Rev. B 76, 115116/1–8.en_US
dc.identifier.citedreferenceAcher, O., Adenot, A.L. & Duverger, F. ( 2000 ) Fresnel coefficients at an interface with a lamellar composite material. Phys. Rev. B 62, 13748 – 13756.en_US
dc.identifier.citedreferenceAguet, F., Geissbuhler, S., Marki, I., Lasser, T. & Unser, M. ( 2009 ) Super‐resolution orientation estimation and localization of fluorescent dipoles using 3‐D steerable filters. Opt. Express 17, 6829 – 6848.en_US
dc.identifier.citedreferenceAxelrod, D. ( 2001 ) Selective imaging of surface fluorescence with very high aperture microscope objectives. J. Biomed. Opt. 6, 6 – 13.en_US
dc.identifier.citedreferenceBenešová, M. & Tománek, P. ( 1999 ) Thickness measurement of thin dielectric films by evanescent total reflection fluorescence. J. Microsc. 194, 434 – 438.en_US
dc.identifier.citedreferenceBohmer, M. & Enderlein, J. ( 2003 ) Orientation imaging of single molecules by wide‐field epifluorescence microscopy. J. Opt. Soc. Am. B 20, 554 – 559.en_US
dc.identifier.citedreferenceBorn, M., &Wolf, E. ( 1975 ) Principle of Optics, 5th edn. Pergamon Press, Oxford.en_US
dc.identifier.citedreferenceBurghardt, T.P. ( 2011 ) Single molecule fluorescence image patterns linked to dipole orientation and axial position: application to myosin cross‐bridges in muscle fibers. Plos One 6, e16772/1–13.en_US
dc.identifier.citedreferenceBurghardt, T.P. & Ajtai, K. ( 2009 ) Mapping microscope object polarized emission to the back focal plane pattern. J. Biomed. Opt. 14, 034036/1–8.en_US
dc.identifier.citedreferenceBurghardt, T.P. & Thompson, N.L. ( 1984 ) Effect of planar dielectric interfaces on fluorescence emission and detection: evanescent excitation with high‐aperture collection. Biophys. J. 46, 729 – 737.en_US
dc.identifier.citedreferenceChallener, W.A., Edwards, J.D., McGowan, R.W., Skorjanec, J. & Yang Z. ( 2000 ) A multilayer grating‐based evanescent wave sensing technique. Sensors and Actuators B 71, 42 – 46.en_US
dc.identifier.citedreferenceChance, R.R., Prock, A. & Silbey, R. ( 1978 ) Molecular fluorescence and energy transfer near interfaces. Adv. Chem Phys. 37, 1 – 65.en_US
dc.identifier.citedreferenceChiu, K.P., Kao, T.S. & Tsai, D.P. ( 2008 ) Evanescent field enhancement due to plasmonic resonances of a metamaterial slab. J. Microsc. 229 pt 2, 313 – 319.en_US
dc.identifier.citedreferenceCourtois, J.‐Y., Courty, J.‐M. & Mertz, J.C. ( 1996 ) Internal dynamics of multilevel atoms near a vacuum‐dielectric interface. Phys. Rev. A 53, 1862 – 1878.en_US
dc.identifier.citedreferenceCyphersmith, A., Maksov, A., Hassey‐Paradise, R., McCarthy, K.D. & Barnes, M.D. ( 2011 ) Defocused emission patterns from chiral fluorophores: application to chiral axis orientation determination. J. Phys. Chem. Lett. 2, 661 – 665.en_US
dc.identifier.citedreferenceDickson, R.M., Norris, D.J. & Moerner, W.E. ( 1998 ) Simultaneous imaging of individual molecules aligned both parallel and perpendicular to the optic axis. Phys. Rev. Lett. 81, 5322 – 5325.en_US
dc.identifier.citedreferenceEkgasit, S., Thammacharoen, C. & Knoll, W. ( 2004 ) Surface plasmon resonance spectroscopy based on evanescent field treatment. Anal. Chem. 76, 561 – 568.en_US
dc.identifier.citedreferenceEkgasit, S., Yub, F. & Knoll, W. ( 2005a ) Fluorescence intensity in surface‐plasmon field‐enhanced fluorescence spectroscopy. Sensors and Actuators B 104, 294 – 301.en_US
dc.identifier.citedreferenceEkgasit, S., Thammacharoen, C., Yu, F. & Knoll W. ( 2005b ) Influence of the metal film thickness on the sensitivity of surface plasmon resonance biosensors. Appl. Spect. 59, 661 – 667.en_US
dc.identifier.citedreferenceEnderlein, J., Ruckstuhl, T. & Seeger, S. ( 1999 ) Highly efficient optical detection of surface‐generated fluorescence. Appl. Opt. 38, 724 – 732.en_US
dc.identifier.citedreferenceFattinger, C. & Lukosz, W. ( 1984 ) Optical‐environment‐dependent lifetimes and radiation patterns of luminescent centers in very thin films. J. Luminesc 31–32, 933 – 935.en_US
dc.identifier.citedreferenceFeng, S., Elson, J.M., & Overfelt, P.L. ( 2005 ) Optical properties of multilayer metal‐dielectric nanofilms with all‐evanescent modes. Opt. Express 13, 4113 – 4124.en_US
dc.identifier.citedreferenceFord, G.W. & Wber, W.H. ( 1984 ) Electromagnetic interactions of molecules with metal surfaces. Phys. Rep 113, 195 – 287.en_US
dc.identifier.citedreferenceForeman, M.R., Romero, C.M. & Török, P. ( 2008 ) Determination of the three‐dimensional orientation of single molecules. Opt. Lett. 33, 1020 – 1022.en_US
dc.owningcollnameInterdisciplinary and Peer-Reviewed


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