Fluorescence excitation and imaging of single molecules near dielectric‐coated and bare surfaces: a theoretical study
dc.contributor.author | Axelrod, Daniel | en_US |
dc.date.accessioned | 2012-08-09T14:56:02Z | |
dc.date.available | 2013-10-01T17:06:32Z | en_US |
dc.date.issued | 2012-08 | en_US |
dc.identifier.citation | Axelrod, Daniel (2012). "Fluorescence excitation and imaging of single molecules near dielectricâ coated and bare surfaces: a theoretical study." Journal of Microscopy 247(2). <http://hdl.handle.net/2027.42/92412> | en_US |
dc.identifier.issn | 0022-2720 | en_US |
dc.identifier.issn | 1365-2818 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/92412 | |
dc.publisher | Blackwell Publishing Ltd | en_US |
dc.publisher | Wiley Periodicals, Inc. | en_US |
dc.subject.other | Total Internal Reflection | en_US |
dc.subject.other | Fluorescence Microscopy | en_US |
dc.subject.other | High Aperture | en_US |
dc.subject.other | Molecular Orientation | en_US |
dc.subject.other | Polarization | en_US |
dc.subject.other | Point Spread Function | en_US |
dc.subject.other | Thin Films | en_US |
dc.title | Fluorescence excitation and imaging of single molecules near dielectric‐coated and bare surfaces: a theoretical study | en_US |
dc.type | Article | en_US |
dc.rights.robots | IndexNoFollow | en_US |
dc.subject.hlbsecondlevel | Science (General) | en_US |
dc.subject.hlbtoplevel | Science | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.contributor.affiliationum | Departments of Physics, Biophysics, and Pharmacology, University of Michigan, Ann Arbor, Michigan, U.S.A. | en_US |
dc.identifier.pmid | 22612666 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/92412/1/j.1365-2818.2012.03625.x.pdf | |
dc.identifier.doi | 10.1111/j.1365-2818.2012.03625.x | en_US |
dc.identifier.source | Journal of Microscopy | en_US |
dc.identifier.citedreference | Lieb, M.A., Zavislan, J.M. & Novotny, L. ( 2004 ) Single‐molecule orientations determined by direct emission pattern imaging. J. Opt. Soc. Am. B 21, 1210 – 1215. | en_US |
dc.identifier.citedreference | Fourkas, J.T. ( 2001 ) Rapid determination of the three‐dimensional orientation of single molecules. Opt. Lett. 26, 211 – 213. | en_US |
dc.identifier.citedreference | Goodman, J.W. ( 1968 ) Introduction to Fourier Optics. McGraw‐Hill, New York. | en_US |
dc.identifier.citedreference | Gu, M. ( 2000 ) Advanced Optical Imaging Theory. Springer Verlag, Berlin. | en_US |
dc.identifier.citedreference | Hellen, E.H. & Axelrod, D. ( 1987 ) Fluorescence emission at dielectric and metal‐film interfaces. J. Opt. Soc. Am. B 4, 337 – 350. | en_US |
dc.identifier.citedreference | Hohlbein, J. & Hübner, C.G. ( 2008 ) Three‐dimensional orientation determination of the emission dipoles of single molecules: the shot‐noise limit. J. Chem. Phys. 129, 094703/1–8. | en_US |
dc.identifier.citedreference | Ishitobi, H., Nakamura, I., Hayazawa, N., Sekkat, Z. & Kawata, S. ( 2010 ) Orientational imaging of single molecules by using azimuthal and radial polarizations. J. Phys. Chem. B 114, 2565 – 2571. | en_US |
dc.identifier.citedreference | Kaiser, R., Lévy, Y., Vansteenkiste, N., Aspect, A., Seifert, W., Leipold, D. & Mlynek, J. ( 1994 ) Resonant enhancement of evanescent waves with a thin dielectric waveguide. Opt. Comm. 104, 234 – 240. | en_US |
dc.identifier.citedreference | Ke, P.C., Gan, X.S., Szajman J., Schilders, S. & Guy, M. ( 1997 ) Optimizing the strength of an evanescent wave generated from a prism coated with a double‐layer thin‐film stack. Bioimaging 5, 1 – 8. | en_US |
dc.identifier.citedreference | Le Moala, E., Forta, E., Lévêque‐For, S., Cordelièresc, F.P., Fontaine‐Aupart, M.‐P. & Ricolleaua, C. ( 2007 ) Enhanced fluorescence cell imaging with metal‐coated slides. Biophys. J. 92, 2150 – 2161. | en_US |
dc.identifier.citedreference | Mattheyses, A.L. & Axelrod, D. ( 2005 ) Fluorescence emission patterns near glass and metal‐coated surfaces investigated with back focal plane imaging. J. Biomed. Opt. 10, 054007/1–6. | en_US |
dc.identifier.citedreference | Mertz, J. ( 2000 ) Radiative absorption, fluorescence, and scattering of a classical dipole near a lossless interface: a unified description. J. Opt. Soc. Am. B 17, 1906 – 1913. | en_US |
dc.identifier.citedreference | Nesnidal R.C. & Walker, T.G. ( 1996 ) Multilayer dielectric structure for enhancement of evanescent waves. Appl. Opt. 35, 2226 – 2229. | en_US |
dc.identifier.citedreference | Oheim, M., Loerke, D., Preitz, B. & Stuhmer, W. ( 1998 ) A simple optical configuration for depth‐resolved imaging using variable angle evanescent‐wave microscopy. SPIE 3568, 131 – 140. | en_US |
dc.identifier.citedreference | Ölveczky, B.P., Periasamy, N. & Verkman, A.S. ( 1997 ) Mapping fluorophore distributions in three dimensions by quantitative multiple angle‐total internal reflection fluorescence microscopy. Biophys. J. 73, 2836 – 2847. | en_US |
dc.identifier.citedreference | Patra, D., Gregor, I. & Enderlein, J. ( 2004 ) Image analysis of defocused single‐molecule images for three‐dimensional molecule orientation studies. J. Phys. Chem. A 108, 6836 – 6841. | en_US |
dc.identifier.citedreference | Pavani, S.R.P., Thompson, M.A., Biteen, J.S., Lord, S.J., Liu, N., Twieg, R.J., Piestun, R. & Moerner, W.E. ( 2009 ) Three‐dimensional, single‐molecule fluorescence imaging beyond the diffraction limit by using a double‐helix point spread function. Proc. Natl. Acad. Sci. USA 106, 2995 – 2999. | en_US |
dc.identifier.citedreference | Polerecky', L., Hamrle, J. & MacCraith, B.D. ( 2000 ) Theory of the radiation of dipoles placed within a multilayer system. Appl. Opt. 39, 3968 – 3977. | en_US |
dc.identifier.citedreference | Ruckstuhl, T. & Verdes, D. ( 2004 ) Supercritical angle fluorescence (SAF) microscopy. Opt. Express 12, 4246 – 4254. | en_US |
dc.identifier.citedreference | Rust, M.J., Bates, M. & Zhuang, X. ( 2006 ) Sub‐diffraction‐limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3, 793 – 795. | en_US |
dc.identifier.citedreference | Sikorski, Z. & Davis, L.M. ( 2008 ) Engineering the collected field for single molecule orientation determination. Opt. Express 16, 3660 – 3673. | en_US |
dc.identifier.citedreference | Wood, B., Pendry, J.B. & Tsai, D.P. ( 2006 ) Directed subwavelength imaging using a layered metal‐dielectric system. Phys. Rev. B 76, 115116/1–8. | en_US |
dc.identifier.citedreference | Acher, O., Adenot, A.L. & Duverger, F. ( 2000 ) Fresnel coefficients at an interface with a lamellar composite material. Phys. Rev. B 62, 13748 – 13756. | en_US |
dc.identifier.citedreference | Aguet, F., Geissbuhler, S., Marki, I., Lasser, T. & Unser, M. ( 2009 ) Super‐resolution orientation estimation and localization of fluorescent dipoles using 3‐D steerable filters. Opt. Express 17, 6829 – 6848. | en_US |
dc.identifier.citedreference | Axelrod, D. ( 2001 ) Selective imaging of surface fluorescence with very high aperture microscope objectives. J. Biomed. Opt. 6, 6 – 13. | en_US |
dc.identifier.citedreference | Benešová, M. & Tománek, P. ( 1999 ) Thickness measurement of thin dielectric films by evanescent total reflection fluorescence. J. Microsc. 194, 434 – 438. | en_US |
dc.identifier.citedreference | Bohmer, M. & Enderlein, J. ( 2003 ) Orientation imaging of single molecules by wide‐field epifluorescence microscopy. J. Opt. Soc. Am. B 20, 554 – 559. | en_US |
dc.identifier.citedreference | Born, M., &Wolf, E. ( 1975 ) Principle of Optics, 5th edn. Pergamon Press, Oxford. | en_US |
dc.identifier.citedreference | Burghardt, T.P. ( 2011 ) Single molecule fluorescence image patterns linked to dipole orientation and axial position: application to myosin cross‐bridges in muscle fibers. Plos One 6, e16772/1–13. | en_US |
dc.identifier.citedreference | Burghardt, T.P. & Ajtai, K. ( 2009 ) Mapping microscope object polarized emission to the back focal plane pattern. J. Biomed. Opt. 14, 034036/1–8. | en_US |
dc.identifier.citedreference | Burghardt, T.P. & Thompson, N.L. ( 1984 ) Effect of planar dielectric interfaces on fluorescence emission and detection: evanescent excitation with high‐aperture collection. Biophys. J. 46, 729 – 737. | en_US |
dc.identifier.citedreference | Challener, W.A., Edwards, J.D., McGowan, R.W., Skorjanec, J. & Yang Z. ( 2000 ) A multilayer grating‐based evanescent wave sensing technique. Sensors and Actuators B 71, 42 – 46. | en_US |
dc.identifier.citedreference | Chance, R.R., Prock, A. & Silbey, R. ( 1978 ) Molecular fluorescence and energy transfer near interfaces. Adv. Chem Phys. 37, 1 – 65. | en_US |
dc.identifier.citedreference | Chiu, K.P., Kao, T.S. & Tsai, D.P. ( 2008 ) Evanescent field enhancement due to plasmonic resonances of a metamaterial slab. J. Microsc. 229 pt 2, 313 – 319. | en_US |
dc.identifier.citedreference | Courtois, J.‐Y., Courty, J.‐M. & Mertz, J.C. ( 1996 ) Internal dynamics of multilevel atoms near a vacuum‐dielectric interface. Phys. Rev. A 53, 1862 – 1878. | en_US |
dc.identifier.citedreference | Cyphersmith, A., Maksov, A., Hassey‐Paradise, R., McCarthy, K.D. & Barnes, M.D. ( 2011 ) Defocused emission patterns from chiral fluorophores: application to chiral axis orientation determination. J. Phys. Chem. Lett. 2, 661 – 665. | en_US |
dc.identifier.citedreference | Dickson, R.M., Norris, D.J. & Moerner, W.E. ( 1998 ) Simultaneous imaging of individual molecules aligned both parallel and perpendicular to the optic axis. Phys. Rev. Lett. 81, 5322 – 5325. | en_US |
dc.identifier.citedreference | Ekgasit, S., Thammacharoen, C. & Knoll, W. ( 2004 ) Surface plasmon resonance spectroscopy based on evanescent field treatment. Anal. Chem. 76, 561 – 568. | en_US |
dc.identifier.citedreference | Ekgasit, S., Yub, F. & Knoll, W. ( 2005a ) Fluorescence intensity in surface‐plasmon field‐enhanced fluorescence spectroscopy. Sensors and Actuators B 104, 294 – 301. | en_US |
dc.identifier.citedreference | Ekgasit, S., Thammacharoen, C., Yu, F. & Knoll W. ( 2005b ) Influence of the metal film thickness on the sensitivity of surface plasmon resonance biosensors. Appl. Spect. 59, 661 – 667. | en_US |
dc.identifier.citedreference | Enderlein, J., Ruckstuhl, T. & Seeger, S. ( 1999 ) Highly efficient optical detection of surface‐generated fluorescence. Appl. Opt. 38, 724 – 732. | en_US |
dc.identifier.citedreference | Fattinger, C. & Lukosz, W. ( 1984 ) Optical‐environment‐dependent lifetimes and radiation patterns of luminescent centers in very thin films. J. Luminesc 31–32, 933 – 935. | en_US |
dc.identifier.citedreference | Feng, S., Elson, J.M., & Overfelt, P.L. ( 2005 ) Optical properties of multilayer metal‐dielectric nanofilms with all‐evanescent modes. Opt. Express 13, 4113 – 4124. | en_US |
dc.identifier.citedreference | Ford, G.W. & Wber, W.H. ( 1984 ) Electromagnetic interactions of molecules with metal surfaces. Phys. Rep 113, 195 – 287. | en_US |
dc.identifier.citedreference | Foreman, M.R., Romero, C.M. & Török, P. ( 2008 ) Determination of the three‐dimensional orientation of single molecules. Opt. Lett. 33, 1020 – 1022. | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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