Natural replacement of vertically inherited lux‐rib genes of Photobacterium aquimaris by horizontally acquired homologues
dc.contributor.author | Urbanczyk, Henryk | en_US |
dc.contributor.author | Furukawa, Takashi | en_US |
dc.contributor.author | Yamamoto, Yuki | en_US |
dc.contributor.author | Dunlap, Paul V. | en_US |
dc.date.accessioned | 2012-08-09T14:56:50Z | |
dc.date.available | 2013-10-01T17:06:32Z | en_US |
dc.date.issued | 2012-08 | en_US |
dc.identifier.citation | Urbanczyk, Henryk; Furukawa, Takashi; Yamamoto, Yuki; Dunlap, Paul V. (2012). "Natural replacement of vertically inherited lux‐rib genes of Photobacterium aquimaris by horizontally acquired homologues." Environmental Microbiology Reports (4): 412-416. <http://hdl.handle.net/2027.42/92440> | en_US |
dc.identifier.issn | 1758-2229 | en_US |
dc.identifier.issn | 1758-2229 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/92440 | |
dc.publisher | Blackwell Publishing Ltd | en_US |
dc.publisher | Wiley Periodicals, Inc. | en_US |
dc.title | Natural replacement of vertically inherited lux‐rib genes of Photobacterium aquimaris by horizontally acquired homologues | en_US |
dc.type | Article | en_US |
dc.rights.robots | IndexNoFollow | en_US |
dc.subject.hlbsecondlevel | Microbiology and Immunology | en_US |
dc.subject.hlbsecondlevel | Natural Resources and Environment Science | en_US |
dc.subject.hlbtoplevel | Science | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.contributor.affiliationum | Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA | en_US |
dc.contributor.affiliationother | Interdisciplinary Research Organization | en_US |
dc.contributor.affiliationother | Faculty of Medicine, University of Miyazaki, 5200 Kihara, Kiyotake, Miyazaki 889‐1692, Japan | en_US |
dc.identifier.pmid | 23760826 | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/92440/1/emi4355_sm_FigS1.pdf | |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/92440/2/emi4355_sm_TableS1.pdf | |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/92440/3/emi4355.pdf | |
dc.identifier.doi | 10.1111/j.1758-2229.2012.00355.x | en_US |
dc.identifier.source | Environmental Microbiology Reports | en_US |
dc.identifier.citedreference | Urbanczyk, H., Ast, J.C., and Dunlap, P.V. ( 2011a ) Phylogeny, genomics, and symbiosis of Photobacterium. FEMS Microbiol Rev 35: 324 – 342. | en_US |
dc.identifier.citedreference | Gogarten, J.P., Doolittle, W.F., and Lawrence, J.G. ( 2002 ) Prokaryotic evolution in light of gene transfer. Mol Biol Evol 19: 2226 – 2238. | en_US |
dc.identifier.citedreference | Hazen, T.H., Pan, L., Gu, J.D., and Sobecky, P.A. ( 2010 ) The contribution of mobile genetic elements to the evolution and ecology of Vibrios. FEMS Microbiol Ecol 74: 485 – 499. | en_US |
dc.identifier.citedreference | Jensen, M.J., Tebo, B.M., Baumann, P., Mandel, M., and Nealson, K.H. ( 1980 ) Characterization of Alteromonas hanedai (sp. nov.), a nonfermentative luminous species of marine origin. Curr Microbiol 3: 311 – 315. | en_US |
dc.identifier.citedreference | Kaeding, A.J., Ast, J.C., Pearce, M.M., Urbanczyk, H., Kimura, S., Endo, H., et al. ( 2007 ) Phylogenetic diversity and cosymbiosis in the bioluminescent symbioses of ‘ Photobacterium mandapamensis ’. Appl Environ Microbiol 73: 3173 – 3182. | en_US |
dc.identifier.citedreference | Kasai, S., Okada, K., Hoshino, A., Iida, T., and Honda, T. ( 2007 ) Lateral transfer of the lux gene cluster. J Biochem 141: 231 – 237. | en_US |
dc.identifier.citedreference | Lee, C.Y., O'Kane, D.J., and Meighen, E.A. ( 1994 ) Riboflavin synthesis genes are linked with the lux operon of Photobacterium phosphoreum. J Bacteriol 176: 2100 – 2104. | en_US |
dc.identifier.citedreference | Lin, J.W., Chao, Y.F., and Weng, S.F. ( 2001 ) Riboflavin synthesis genes ribE, ribB, ribH, ribA reside in the lux operon of Photobacterium leiognathi. Biochem Biophys Res Commun 284: 587 – 595. | en_US |
dc.identifier.citedreference | Lind, P.A., Tobin, C., Berg, O.G., Kurland, C.G., and Andersson, D.I. ( 2010 ) Compensatory gene amplification restores fitness after inter‐species gene replacements. Mol Microbiol 75: 1061 – 1063. | en_US |
dc.identifier.citedreference | Makemson, J.C., Fulayfil, N.R., Landry, W., Van Ert, L.M., Wimpee, C.F., Widder, E.A., and Case, J.F. ( 1997 ) Shewanella woodyi sp. nov., an exclusively respiratory luminous bacterium isolated from the Alboran Sea. Int J Syst Bacteriol 47: 1034 – 1039. | en_US |
dc.identifier.citedreference | Ochman, H., Lawrence, J.G., and Groisman, E. ( 2000 ) Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299 – 304. | en_US |
dc.identifier.citedreference | O'Grady, E.A., and Wimpee, C.F. ( 2008 ) Mutations in the lux operon of natural dark mutants in the genus Vibrio. Appl Environ Microbiol 74: 61 – 66. | en_US |
dc.identifier.citedreference | Swofford, D.L. ( 2003 ) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sunderland, MA, USA: Sinauer Associates. | en_US |
dc.identifier.citedreference | Urbanczyk, H., Ast, J.C., Higgins, M.J., Carson, J., and Dunlap, P.V. ( 2007 ) Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov. Int J Syst Evol Microbiol 57: 2823 – 2829. | en_US |
dc.identifier.citedreference | Urbanczyk, H., Ast, J.C., Kaeding, A.J., Oliver, J.D., and Dunlap, P.V. ( 2008 ) Phylogenetic analysis of the incidence of lux gene horizontal transfer in Vibrionaceae. J Bacteriol 190: 3494 – 3504. | en_US |
dc.identifier.citedreference | Urbanczyk, H., Ogura, Y., Hendry, T.A., Gould, A.L., Kiwaki, N., Atkinson, J.T., et al. ( 2011b ) Genome sequence of Photobacterium mandapamensis strain svers.1.1, the bioluminescent symbiont of the cardinal fish Siphamia versicolor. J Bacteriol 193: 3144 – 3145. | en_US |
dc.identifier.citedreference | Wada, M., Kamiya, A., Uchiyama, N., Yoshizawa, S., Kita‐Tsukamoto, K., Ikejima, K., et al. ( 2006 ) LuxA gene of light organ symbionts of the bioluminescent fish Acropoma japonicum ( Acropomatidae ) and Siphamia versicolor ( Apogonidae ) forms a lineage closely related to that of Photobacterium leiognathi ssp. mandapamensis. FEMS Microbiol Lett 260: 186 – 192. | en_US |
dc.identifier.citedreference | Waterfield, N.R., Ciche, T., and Clarke, D. ( 2009 ) Photorhabdus and a host of hosts. Annu Rev Microbiol 63: 557 – 574. | en_US |
dc.identifier.citedreference | Widder, E.A. ( 2010 ) Bioluminescence in the ocean: origins of biological, chemical, and ecological diversity. Science 328: 704 – 708. | en_US |
dc.identifier.citedreference | Wimpee, C.F., Nadeau, T.L., and Nealson, K.H. ( 1991 ) Development of species‐specific hybridization probes for marine luminous bacteria by using in vitro DNA amplification. Appl Environ Microbiol 57: 1319 – 1324. | en_US |
dc.identifier.citedreference | Wollenberg, M.S., Preheim, S.P., Polz, M.F., and Ruby, E.G. ( 2012 ) Polyphyly of non‐bioluminescent Vibrio fischeri sharing a lux ‐locus deletion. Environ Microbiol 14: 655 – 668. | en_US |
dc.identifier.citedreference | Yoshizawa, S., Wada, M., Kita‐Tsukamoto, K., Yokota, A., and Kogure, K. ( 2009 ) Photobacterium aquimaris sp. nov., a luminous marine bacterium isolated from seawater. Int J Syst Evol Microbiol 59: 1438 – 1442. | en_US |
dc.identifier.citedreference | Ast, J.C., Urbanczyk, H., and Dunlap, P.V. ( 2007 ) Natural merodiploidy of the lux ‐ rib operon of Photobacterium leiognathi from coastal waters of Honshu, Japan. J Bacteriol 189: 6148 – 6158. | en_US |
dc.identifier.citedreference | Ast, J.C., Urbanczyk, H., and Dunlap, P.V. ( 2009 ) Multi‐gene analysis reveals previously unrecognized phylogenetic diversity in Aliivibrio. Syst Appl Microbiol 32: 379 – 386. | en_US |
dc.identifier.citedreference | Baumann, P., Furniss, A.L., and Lee, J.V. ( 1984 ) Genus Vibrio Pacini 1854. In Bergey's Manual of Systematic Bacteriology. Kreig, N.R., and Holt, J.G. (eds). Baltimore, MD, USA: Williams and Wilkins, pp. 518 – 538. | en_US |
dc.identifier.citedreference | Dunlap, P.V. ( 2009 ) Bioluminescence, microbial. In Encyclopedia of Microbiology. Schaechter, M. (ed.). Oxford, UK: Elsevier, pp. 45 – 61. | en_US |
dc.identifier.citedreference | Dunlap, P.V., and Kita‐Tsukamoto, K. ( 2006 ) Luminous bacteria. In The Prokaryotes: A Handbook on the Biology of Bacteria, Vol. 3. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackebrandt, E. (eds). New York, NY, USA: Springer, pp. 863 – 892. | en_US |
dc.identifier.citedreference | Forst, S., Dowds, B., Boemare, N., and Stackebrandt, E. ( 1997 ) Xenorhabdus and Photorhabdus spp.: bugs that kill bugs. Ann Rev Microbiol 51: 47 – 72. | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
Files in this item
Remediation of Harmful Language
The University of Michigan Library aims to describe library materials in a way that respects the people and communities who create, use, and are represented in our collections. Report harmful or offensive language in catalog records, finding aids, or elsewhere in our collections anonymously through our metadata feedback form. More information at Remediation of Harmful Language.
Accessibility
If you are unable to use this file in its current format, please select the Contact Us link and we can modify it to make it more accessible to you.