View Item 

Show simple item record

New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences
dc.contributor.authorHood, Leroy E.en_US
dc.contributor.authorOmenn, Gilbert S.en_US
dc.contributor.authorMoritz, Robert L.en_US
dc.contributor.authorAebersold, Ruedien_US
dc.contributor.authorYamamoto, Keith R.en_US
dc.contributor.authorAmos, Michaelen_US
dc.contributor.authorHunter‐cevera, Jennieen_US
dc.contributor.authorLocascio, Laurieen_US
dc.date.accessioned2012-10-02T17:20:07Z
dc.date.available2013-10-18T17:47:30Zen_US
dc.date.issued2012-09en_US
dc.identifier.citationHood, Leroy E.; Omenn, Gilbert S.; Moritz, Robert L.; Aebersold, Ruedi; Yamamoto, Keith R.; Amos, Michael; Hunter‐cevera, Jennie ; Locascio, Laurie (2012). "New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences." PROTEOMICS 12(18): 2773-2783. <http://hdl.handle.net/2027.42/93688>en_US
dc.identifier.issn1615-9853en_US
dc.identifier.issn1615-9861en_US
dc.identifier.urihttps://hdl.handle.net/2027.42/93688
dc.publisherBattelle Memorial Instituteen_US
dc.publisherWiley Periodicals, Inc.en_US
dc.subject.otherEconomic Growthen_US
dc.subject.otherComplex Systemsen_US
dc.subject.otherDemocratization of Proteomicsen_US
dc.subject.otherSystems Biologyen_US
dc.subject.otherIntegrationen_US
dc.subject.otherGrand Challengesen_US
dc.titleNew and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciencesen_US
dc.typeArticleen_US
dc.rights.robotsIndexNoFollowen_US
dc.subject.hlbsecondlevelMolecular, Cellular and Developmental Biologyen_US
dc.subject.hlbsecondlevelBiological Chemistryen_US
dc.subject.hlbsecondlevelChemical Engineeringen_US
dc.subject.hlbsecondlevelChemistryen_US
dc.subject.hlbsecondlevelMaterials Science and Engineeringen_US
dc.subject.hlbtoplevelHealth Sciencesen_US
dc.subject.hlbtoplevelScienceen_US
dc.subject.hlbtoplevelEngineeringen_US
dc.description.peerreviewedPeer Revieweden_US
dc.identifier.pmid22807061en_US
dc.description.bitstreamurlhttp://deepblue.lib.umich.edu/bitstream/2027.42/93688/1/pmic7183.pdf
dc.identifier.doi10.1002/pmic.201270086en_US
dc.identifier.sourcePROTEOMICSen_US
dc.identifier.citedreferenceBeck, M., Schmidt, A., Malmstroem, J., Claassen, M. et al., The quantitative proteome of a human cell line. Mol. Syst. Biol. 2011, 7, 549.en_US
dc.identifier.citedreferenceNagaraj, N., Kulak, N. A., Cox, J., Neuhauser, N. et al., Systems‐wide perturbation analysis with near complete coverage of the yeast proteome by single‐shot UHPLC runs on a bench‐top Orbitrap. Mol. Cell. Proteomics 2011, 11, M111.013722.en_US
dc.identifier.citedreferenceChi, A., Huttenhower, C., Geer, L. Y., Coon, J. J. et al., Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc. Natl. Acad. Sci. USA 2007, 104, 2193 – 2198.en_US
dc.identifier.citedreferenceOffice of Science and Technology Policy, National Bioeconomy Blueprint. Office of Science and Technology Policy, Executive Office of the President, Washington DC 2012, 48 pp.en_US
dc.identifier.citedreferenceZhang, J., Omics‐related research in rise in China. Genet. Eng. Biotechnol. News 2011, 31, 36 – 37.en_US
dc.identifier.citedreferenceQin, S., Zhou, Y., Lok, A. S., Tsodikov, A. et al., SRM targeted proteomics in search for biomarkers of HCV‐induced progression of fibrosis to cirrhosis in HALT‐C patients. Proteomics 2012, 12, 1244 – 1252.en_US
dc.identifier.citedreferenceHood, L., Flores, M., Personal view on systems medicine and the emergence of proactive P4 medicine: predictive, preventive, personalized and participatory. New Biotechnol. 2012, Mar 18, doi: 10.1016/j.nbt.2012.03.004en_US
dc.identifier.citedreferenceKinsinger, C. R., Apffel, J., Baker, M., Bian, X. et al., Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics 2011, DOI 10.1002/pmic.201100562; Mol. Cell Proteomics 2011, DOI 10.1074/mcp.0111.015446; J. Proteome Research 2011, DOI 10.1021/pr201071t.en_US
dc.identifier.citedreferenceInstitute of Medicine Committee on Omics‐Based Predictive Tests, Michael, C. C., Nass, S., Omenn, G. S. (Eds.), Evolution of Translational Omics: Lessons Learned and Path Forward, National Academy Press, Washington DC 2012.en_US
dc.identifier.citedreferenceMenon, R., Roy, A., Mukherjee, S., Belkin, S. et al., Functional implications of structural predictions for alternative splice proteins expressed in her2/neu‐induced breast cancers. J. Proteome Res. 2011, 10, 5503 – 5511.en_US
dc.identifier.citedreferencePrusiner, S., Cell biology. A unifying role for prions in neurodegenerative diseases. Science 2012, 336, 1511 – 1513.en_US
dc.identifier.citedreferenceRissin, D. M., Kan, C. W., Campbell, T. G., Howes, S. C. et al., Single‐molecule enzyme‐linked immunosorbent assay detects serum proteins at subfemtomolar concentrations. Nat. Biotechnol. 2010, 28, 595 – 599.en_US
dc.identifier.citedreferenceBancaud, A., Huet, S., Rabut, G., Ellenberg, J. et al., Fluorescence perturbation techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, photoactivation, photoconversion, and FLIP. Cold Spring. Harb. Protoc. 2010, PMID: 21123431.en_US
dc.identifier.citedreferenceAgnew, H. D., Rohde, R. D., Millward, S.W., Nag, A. et al., Iterative in situ click chemistry creates antibody‐like protein‐capture agents. Angew. Chem. Int. Ed. Engl. 2009, 48, 4944 – 4948.en_US
dc.identifier.citedreferenceTate, S. A., Loboda, A., Chernushevich, I., Gillet, L. et al. (SWATH) a method for collecting MSMS of all parent ions in a sample on an LC time scale. 59th ASMS Conference. Denver, CO. 2011, MP 596.en_US
dc.identifier.citedreferenceMalsch, I., Protein research calls for advanced instruments. Ind. Phys, 2005, 9, 18.en_US
dc.identifier.citedreferenceOmenn, G. S., AAAS presidential address: grand challenges and great opportunities in science, technology, and public policy. Science 2006, 314, 1696 – 1704.en_US
dc.identifier.citedreferenceHood, L., A personal journey of discovery: developing technology and changing biology. Annu. Rev. Anal. Chem. 2008 1, 1 – 43.en_US
dc.identifier.citedreferenceVidal, M., Chan, D. W., Gerstein, M., Mann, M. et al., The human proteome – a scientific opportunity for transforming diagnostics, therapeutics, and healthcare. Clin. Proteomics 2012, 9, 6.en_US
dc.identifier.citedreferencePaik, Y. K., Jeong, S. K., Omenn, G. S., Uhlen, M. et al., The chromosome‐centric human proteome project for cataloguing proteins encoded in the genome. Nat. Biotechnol. 2012, 30, 221 – 223.en_US
dc.identifier.citedreferenceLegrain, P., Aebersold, R., Archakov, A., Bairoch, A. et al., The human proteome project: current state and future direction. Mol. Cell. Proteomics 2011, 10, M111 009993.en_US
dc.identifier.citedreferenceFarrah, T., Deutsch, E. W., Omenn, G. S., Campbell, D.S. et al., A high‐confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas. Mol. Cell. Proteomics 2011, 10, M110 006353.en_US
dc.identifier.citedreferenceZeiler, M., Straube, W. L., Lundberg, E., Uhlen, M. et al., A protein epitope signature tag (PrEST) library allows SILAC‐based absolute quantification and multiplexed determination of protein copy numbers in cell lines. Mol. Cell. Proteomics 2012, 11, O111 009613.en_US
dc.identifier.citedreferenceUhlen, M., Oksvold, P., Fagerberg, L., Lundberg, E. et al., Towards a knowledge‐based human protein atlas. Nat. Biotechnol. 2010, 28, 1248 – 1250.en_US
dc.identifier.citedreferenceBattelle Technology Partnership Practice, How a $3.8 Billion Investment in Human Genome Project drove $796 billion in Economic Impact Creating 310,000 Jobs and Launching the Genomic Revolution. Battelle Memorial Institute, Washington, DC 2011.en_US
dc.identifier.citedreferenceNational Research Council. A New Biology for the 21st Century. The National Academies Press, Washington, DC 2009.en_US
dc.identifier.citedreferenceNational Research Council. Committee on Research at the Intersection of the Physical and Life Sciences. Research at the Intersection of the Physical and Life Sciences. National Academies Press., Washington, DC 2010.en_US
dc.identifier.citedreferenceLamond, A. I., Uhlen, M., Horning, S., Makarov, A. et al., Advancing cell biology through proteomics in space and time (PROSPECTS). Mol. Cell. Proteomics 2012, 11, O112 017731.en_US
dc.identifier.citedreferenceFarrah, T., Deutsch, E. W., Kreisberg, R., Sun, Z. et al., PASSEL: the PeptideAtlas SRMexperiment library. Proteomics 2012, 2, 1170 – 1175.en_US
dc.identifier.citedreferencePicotti, P., Bodenmiller, B., Mueller, L.N., Domon, B. et al., Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138, 795 – 806.en_US
dc.identifier.citedreferenceAnderson, N. L., Anderson, N. G., Haines, L. R., Hardie, D. B. et al., Mass spectrometric quantitation of peptides and proteins using stable isotope standards and capture by anti‐peptide antibodies (SISCAPA). J. Proteome Res. 2004, 3, 235 – 244.en_US
dc.owningcollnameInterdisciplinary and Peer-Reviewed


Files in this item

Name:
pmic7183.pdf
Size:
507.1KB
Format:
PDF
View/Open

Show simple item record

Remediation of Harmful Language

The University of Michigan Library aims to describe library materials in a way that respects the people and communities who create, use, and are represented in our collections. Report harmful or offensive language in catalog records, finding aids, or elsewhere in our collections anonymously through our metadata feedback form. More information at Remediation of Harmful Language.

Accessibility

If you are unable to use this file in its current format, please select the Contact Us link and we can modify it to make it more accessible to you.