Studying Pub M ed usages in the field for complex problem solving: Implications for tool design
dc.contributor.author | Mirel, Barbara | en_US |
dc.contributor.author | Tonks, Jennifer Steiner | en_US |
dc.contributor.author | Song, Jean | en_US |
dc.contributor.author | Meng, Fan | en_US |
dc.contributor.author | Xuan, Weijian | en_US |
dc.contributor.author | Ameziane, Rafiqa | en_US |
dc.date.accessioned | 2013-05-02T19:35:19Z | |
dc.date.available | 2014-07-01T15:53:32Z | en_US |
dc.date.issued | 2013-05 | en_US |
dc.identifier.citation | Mirel, Barbara; Tonks, Jennifer Steiner; Song, Jean; Meng, Fan; Xuan, Weijian; Ameziane, Rafiqa (2013). "Studying Pub M ed usages in the field for complex problem solving: Implications for tool design." Journal of the American Society for Information Science and Technology (5): 874-892. <http://hdl.handle.net/2027.42/97504> | en_US |
dc.identifier.issn | 1532-2882 | en_US |
dc.identifier.issn | 1532-2890 | en_US |
dc.identifier.uri | https://hdl.handle.net/2027.42/97504 | |
dc.publisher | Erlbaum | en_US |
dc.publisher | Wiley Periodicals, Inc. | en_US |
dc.subject.other | Information Seeking | en_US |
dc.subject.other | Qualitative Research | en_US |
dc.subject.other | End User Searching | en_US |
dc.title | Studying Pub M ed usages in the field for complex problem solving: Implications for tool design | en_US |
dc.type | Article | en_US |
dc.rights.robots | IndexNoFollow | en_US |
dc.subject.hlbsecondlevel | Information and Library Science | en_US |
dc.subject.hlbtoplevel | Social Sciences | en_US |
dc.description.peerreviewed | Peer Reviewed | en_US |
dc.description.bitstreamurl | http://deepblue.lib.umich.edu/bitstream/2027.42/97504/1/asi22796.pdf | |
dc.identifier.doi | 10.1002/asi.22796 | en_US |
dc.identifier.source | Journal of the American Society for Information Science and Technology | en_US |
dc.identifier.citedreference | Pratt, W., & Yetisgen‐Yildiz, M. ( 2003 ). LitLinker: Capturing connections across the biomedical literature. In Proceedings of the International Conference on Knowledge Capture (pp. 105 – 112 ). New York: ACM Press. | en_US |
dc.identifier.citedreference | Patel, V., & Kaufman, D. ( 2006 ). Cognitive science and biomedical informatics. In E. Shortliffe & J.J. Cimino (Eds.), Biomedical informatics: Computer applications in health care and biomedicine ( 3rd ed. ). New York: Springer‐Verlag. | en_US |
dc.identifier.citedreference | Patel, V., Kaufman, D., & Arocha, J. ( 2002 ). Emerging paradigms of cognition in medical decision‐making. Journal of Biomedical Informatics, 35, 52 – 75. | en_US |
dc.identifier.citedreference | Pratt, W., & Fagan, L. ( 2000 ). The usefulness of dynamically categorizing search results. Journal of American Medical Informatics Association, 7, 605 – 617 | en_US |
dc.identifier.citedreference | Quinones, K., Su, H., Marshall, B., Eggers, S., & Chen, H. ( 2007 ). User‐centered evaluation of Arizona BioPathway: An information extraction, integraton, and visualization system. IEEE Transactions on Information Technology in Biomedicine, 11, 527 – 536. | en_US |
dc.identifier.citedreference | Radlinski, R., Jurup, M., & Joachims, T. ( 2008 ). How does clickthrough data reflect information retrieval quality? In Proceedings of the 17 th Annual ACM Conference on Information and Knowledge Management (CIKM'08 ) (pp. 73 – 82 ). New York: ACM Press. | en_US |
dc.identifier.citedreference | Ramampiaro, H., & Li, C ( 2011 ). Supporting biomedical information retrieval: The BioTracer approach. In Proceedings of the Transactions on Large Scale Data and Knowledge Centered Systems (pp. 73 – 94 ). Heidelberg, Germany: Springer‐Verlag. | en_US |
dc.identifier.citedreference | Sandusky, R., & Tenopir, C. ( 2007 ). Finding and using journal article components: Impacts of disaggregation on teaching and research practices. Journal of the American Society for Information Science and Technology, 59, 970 – 982. | en_US |
dc.identifier.citedreference | Sarkar, I., Schenk, R., Miller, H., & Norton, C. ( 2009 ). LigerCat: Using “MeSH clouds” from journal, article, or gene citations to facilitate the identification of relevant biomedical literature. American Medical Informatics Association Annual Symposium Proceedings, 2009, 563 – 567. | en_US |
dc.identifier.citedreference | Smalheiser, N.R., Torvik, V.I., & Zhou, W. ( 2009 ). Arrowsmith two‐node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE. Computer Methods and Programs in Biomedicine 94, 190 – 197. Retrieved from http://arrowsmith.psych.uic.edu/cgi‐bin/arrowsmith_uic/start.cgi | en_US |
dc.identifier.citedreference | Strauss, A., & Corbin, J. ( 1994 ) Grounded theory methodology: An overview. In N. Denzin & Y.S. Lincoln (Eds.), Handbook of qualitative research (pp. 273 – 285 ). Thousand Oaks, CA: Sage. | en_US |
dc.identifier.citedreference | Tang, M‐C. ( 2006 ). Browsing and searching in a faceted information space: A naturalistic study of PubMed users’ interaction with a display tool. Journal of the American Society for Information Science and Technology 58, 1998 – 2006. | en_US |
dc.identifier.citedreference | Teevan, J., Dumais, S., & Liebling, D. ( 2008 ). To personalize or not to personalize: Modeling queries with variation in user intent. Proceedings of the 31 st Annual International ACM Conference on Research and Development in Information Retrieval (SIGIR ’08) (pp. 163 – 170 ). New York: ACM. | en_US |
dc.identifier.citedreference | Tenopir, C., Wang, P., Zhang, Y., Simmons, B., & Pollard R. ( 2006 ). Academic users’ interactions with ScienceDirect in search tasks: Affective and cognitive behaviors. Information Processing and Management, 44, 105 – 121. | en_US |
dc.identifier.citedreference | Toms, E.G. ( 2002 ). Information interaction: Providing a framework for information architecture. Journal of the American Society for Information Science and Technology, 53, 858 – 862. | en_US |
dc.identifier.citedreference | White, R., & Morris, D. ( 2007 ). Investigating the querying and browsing behavior of advanced search engine users. In Proceedings of the 30 th Annual International ACM SIGIR Conference on Research and Development on Information Retrieval (SIGIR ‘07 ) (pp. 255 – 262 ) New York: ACM Press. | en_US |
dc.identifier.citedreference | Wilbur, W.J., Kim, W., & Xie, N. ( 2007 ). Spelling correction in the PubMed search engine. Information Retrieval Boston, 9 ( 5 ), 543 – 564. | en_US |
dc.identifier.citedreference | Wildemuth, B. ( 2006 ). Evidence‐based practice in search interface design. Journal of the American Society for Information Science and Technology, 57, 825 – 828. | en_US |
dc.identifier.citedreference | Wilson, M., Schraefel, M.C., & White, R. ( 2009 ). Evaluating advanced search interfaces using established information‐seeking methods. Journal of the American Society for Information Science and Technology, 60, 1407 – 1422. | en_US |
dc.identifier.citedreference | Xie, H.I. ( 2000 ). Shifts in interactive intentions and information‐seeking strategies on interactive information retrieval. Journal of the American Society of Information Science, 51, 841 – 857. | en_US |
dc.identifier.citedreference | Xu, J., & Croft, W.B. ( 2000 ). Improving the effectiveness of information retrieval with local context analysis. ACM Transactions on Information Systems, 18, 70 – 112. | en_US |
dc.identifier.citedreference | Xuan, W., Dai, M., Buckner, J., Mirel, B., Song, J., Athey, B., … Meng, F. ( 2010 ). Cross‐domain neurobiology data integration and exploration. BMC Genomics, 11 ( Suppl 3 ), S6. | en_US |
dc.identifier.citedreference | Agarwal S., & Yu, H. ( 2009 ). Automatically classifying sentences in full‐text biomedical articles into introduction, methods, results and discussion. Bioinformatics, 25, 3174 – 3180. | en_US |
dc.identifier.citedreference | Anderson, T.D. ( 2006 ). Uncertainty in action: Observing information seeking within the creative process of scholarly research. Information Research, 12. Retrieved from http://informationr.net/ir/12‐1/paper283.html | en_US |
dc.identifier.citedreference | Barton, E. ( 2004 ). Linguistic discourse analysis: how the language in texts works. In C. Bazerman (Ed.), What writing does and how it does it: An introduction to analyzing texts and textual practices (pp. 57 – 82 ). Mahwah, NJ: Erlbaum. | en_US |
dc.identifier.citedreference | Bates, M. ( 1990 ). Where should the person stop and the information search interface start? Information Processing & Management, 26 ( 5 ), 575 – 591. | en_US |
dc.identifier.citedreference | Bates, M.J. ( 1999 ). The invisible substrate of information science. Journal of the American Society for Information Science, 50, 1043 – 1050. | en_US |
dc.identifier.citedreference | Bishop, A.P. ( 1999 ). Document structure and digital libraries: How researchers mobilize information in journal articles. Information Processing and Management, 35, 255 – 279. | en_US |
dc.identifier.citedreference | Blake, C. ( 2010 ). Beyond genes, proteins, and abstracts: Identifying scientific claims from full‐text biomedical articles. Journal of Biomedical Informatics, 43, 173 – 189. | en_US |
dc.identifier.citedreference | Blake, C., & Pratt, W. ( 2006a ). Collaborative information synthesis I: A model of information behaviors of scientists in medicine and public health. Journal of the American Society for Information Science and Technology, 57, 1740 – 1749. | en_US |
dc.identifier.citedreference | Blake, C., & Pratt, W. ( 2006b ). Collaborative information synthesis II: Recommendations for information systems to support synthesis activities. Journal of the American Society for Information Science and Technology, 57, 1888 – 1895. | en_US |
dc.identifier.citedreference | Chowdury, S., Gibb, F., & Landoni, M. ( 2011 ). Uncertainty in information seeking and retrieval: A study in an academic environment. Information Processing and Management, 47, 157 – 175. | en_US |
dc.identifier.citedreference | Cohen, K.B., Vespoor, K., Johnson, H.L., Roeder, C., Ogren, P.V., Baumgartner, W.A., Jr., … Hunter, L. ( 2008 ). High‐precision biological event extraction: Effects of system and data. Computational Intelligence, 27, 681 – 701. | en_US |
dc.identifier.citedreference | Cresswell, J., & Plano Clark, V. ( 2006 ). Designing and conducting mixed methods research. Thousand Oaks, CA: Sage. | en_US |
dc.identifier.citedreference | Ding, J., Hughes, L., Berleant, D., Fulmer, A., & Wurtele, E. ( 2006 ). PubMed Assistant: A biologist‐friendly interface for enhanded PubMed search. Bioinformatics, 22, 378 – 380. | en_US |
dc.identifier.citedreference | Dogan, R., Murray, G. C., Neveol, A., & Lu, Z. ( 2009 ). Understanding PubMed user search behavior through log analysis. Database, 2009, bap018. | en_US |
dc.identifier.citedreference | Eaton, A. ( 2006 ). HubMed:Aweb‐based biomedical literature search interface. Nucleic Acids Research, 34, W745 – W747. | en_US |
dc.identifier.citedreference | Ellis, D. ( 1989 ). A behavioural approach to information retrieval system design. Journal of Documentation 45, 171 – 212. | en_US |
dc.identifier.citedreference | Ellis, D., & Haugan, M. ( 1997 ). Modeling the information seeking patterns of engineers and research scientists in an industrial environment. Journal of Documentation, 53, 384 – 403. | en_US |
dc.identifier.citedreference | Ellis, D., Cox, D., & Hall, K. ( 1993 ). A comparison of the information seeking patterns of researchers in the physical and social sciences. Journal of Documentation, 49, 356 – 369. | en_US |
dc.identifier.citedreference | Gehring, K., & Eastman, D. ( 2008 ). Information fluency for undergraduate biology majors: Applications of inquiry based learning in a developmental biology course. CBE–Life Sciences Education, 7, 54 – 63. | en_US |
dc.identifier.citedreference | Hearst, M. ( 1999 ). The use of categories and clusters for organizing retrieval results. In T. Strzalkowski (Ed.), Natural language information retrieval (pp. 333 – 373 ). Dordrecht, The Netherlands: Kluwer. | en_US |
dc.identifier.citedreference | Herskovic, J., Tanaka, L., Hersh, W., & Berstam, E.V. ( 2007 ). A day in the life of PubMed: Analysis of a typical day's query log. Journal of the American Medical Informatics Association, 14, 212 – 220. | en_US |
dc.identifier.citedreference | Ingwersen, P., & Järvelin, K. ( 2005 ). The turn: Integration if information seeking and retrieval in context. Heidelberg, Germany: Springer. | en_US |
dc.identifier.citedreference | Jansen, B.J., & Rieh, S.Y. ( 2010 ). The seventeen theoretical constructs of information searching and information retrieval. Journal of the American Society for Information Science and Technology, 61, 1517 – 1534. | en_US |
dc.identifier.citedreference | Jansen, R., Booth, D., & Smith, B. ( 2009 ). Using the taxonomy of cognitive learning to model online searching. Information Processing and Management, 45, 643 – 663. | en_US |
dc.identifier.citedreference | Kilicoglu, H., Fiszman, M., Rodriguez, A., Shin, D., Ripple, A.M., & Rindflesch, T.C. ( 2008 ). Semantic MEDLINE: A web application for managing the results of PubMed Searches. In Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008) (pp. 69 – 76 ). Turku, Finland: Turku Centre for Computer Science. | en_US |
dc.identifier.citedreference | Komlodi, A., & Soergel, D. ( 2002 ). Attorneys interacting with legal information systems: Tools for mental model building and task integration. Proceedings of the American Society for Information Science and Technology, 39, 152 – 163. | en_US |
dc.identifier.citedreference | Koslowski, B., Marasia, J., Chelenza, M., & Dublin, R. ( 2008 ). Information becomes evidence when an explanation can incorporate it into a causal framework. Cognitive Development, 23, 472 – 487. | en_US |
dc.identifier.citedreference | Kuhlthau, C.C. ( 1993 ). Seeking meaning. A process approach to library and information services. Norwood, NJ: Ablex. | en_US |
dc.identifier.citedreference | Kuhlthau, C.C. ( 1999 ). Accommodating the user's information search process: Challenges for information retrieval system designers. Bulletin of the American Society for Information Science, 25, 12 – 16. | en_US |
dc.identifier.citedreference | Kumpulainen, S., & Järvelin, K. ( 2010 ). Information integration in molecular medicine: Integrated use of multiple channels. In Proceedings of the Third Symposium on Information Interaction in Context (IIIX ‘10 ) (pp. 95 – 104 ). New York: ACM Press. | en_US |
dc.identifier.citedreference | Leckie, G.J., Pettigrew, K.E., & Sylvain, C. ( 1996 ). Modeling the information seeking of professionals: A general model derived from reseach on engineers, health care professions, and lawyers. Library Quarterly, 66, 161 – 193. | en_US |
dc.identifier.citedreference | Leroy, G., Xu, J., Chung, W., Eggers, S., & Chen, H. ( 2007 ). An end user evaluation of query formulation and results review tools in three medical meta‐search engines. International Journal of Medical Informatics, 76, 780 – 789. | en_US |
dc.identifier.citedreference | Li, Y., & Belkin, N.J. ( 2010 ). An exploration of the relationships between work task and interactive information search behavior. Journal of the American Society for Information Science, 61, 1771 – 1789. | en_US |
dc.identifier.citedreference | Lin, J., DiCuccio, M., Grigorya, V., & Wilbur W.J. ( 2008 ). Navigating information spaces: A case study of related article search in PubMed. Information Processing and Management, 44, 1771 – 1783. | en_US |
dc.identifier.citedreference | Lin, J., & Wilbur W.J. ( 2009 ). Modeling actions of PubMed users with n‐gram language models. Information Retrieval, 12, 487 – 503. | en_US |
dc.identifier.citedreference | Lu, A. ( 2011 ). PubMed and beyond: A survey of web tools for searching biomedical literature. Database, 2011, baq036. | en_US |
dc.identifier.citedreference | Makri, S., & Warwick, C. ( 2010 ) Information for inspiration: Understanding architects’ information seeking and use behaviors to inform design. Journal of the American Society for Information Science and Technology, 61, 1745 – 1770. | en_US |
dc.identifier.citedreference | Makri, S., Blandford, A., & Cox, A. ( 2008 ). Investigations the information‐seeking behavior of academic lawyers: From Ellis's model to design. Information Processing and Management, 44, 613 – 634. | en_US |
dc.identifier.citedreference | Matos, S., Arrais, J.P., Maia‐Rodrigues, J., & Oliveira, J.L. ( 2010 ). Concept‐based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinformatics, 11, 212. | en_US |
dc.identifier.citedreference | McCune, V., & Hounsell, D. ( 2005 ). The development of students’ ways of thinking and practicing in threefinal‐year biology courses. Higher Education, 49, 255 – 289. | en_US |
dc.identifier.citedreference | Muin, M., Fontelo, P, Liu, F., & Acklerman, M. ( 2005 ). SLIM: An alternative web interface for MEDLINE/PubMed searches–a preliminary study. BMC Bioinformatics and Decision Making, 5, 37 – 46. | en_US |
dc.identifier.citedreference | Nicholas, D., Huntington, P., Jamali, H.R., & Watkinson, A. ( 2006 ). The information seeking behavior of the users of digital scholarly journals. Information Processing & Management, 42, 1345 – 1365. | en_US |
dc.identifier.citedreference | National Institutes of Health. ( 2011 ). National Library of Medicine (NLM) Technical Bulletin. PubMed advanced search page updated. Retrieved from http://www.nlm.nih.gov/pubs/techbull/nd11/nd11_pm_advanced_search.html | en_US |
dc.owningcollname | Interdisciplinary and Peer-Reviewed |
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