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- Creator:
- Li, Yang and Steiner, Allison
- Description:
- WRF-Chem simulation with 1.33 km resolution using the MYJ PBL scheme over the Baltimore-Washington region and WRF-Chem simulation with 1.33 km resolution using the YSU PBL scheme over the Baltimore-Washington region
- Keyword:
- LES, WRF-Chem, vertical mixing, oxidants, boundary layer dynamics
- Citation to related publication:
- Li, Y., Barth, M. C., and Steiner, A. L.: Comparing turbulent mixing of atmospheric oxidants across model scales, Atmospheric Environment, 199, 88-101, https://doi.org/10.1016/j.atmosenv.2018.11.004, 2018.
- Discipline:
- Science
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- Creator:
- Atwell, Jon
- Description:
- The data file is json formatted and all fields are named descriptively. The code is written in Python 2.7 and is heavily commented.
- Keyword:
- inequality and coadaptation
- Citation to related publication:
- Atwell J, Savit R (2016) The Emergence of Groups and Inequality through Co-Adaptation. PLoS ONE 11(6): e0158144. https://doi.org/10.1371/journal.pone.0158144
- Discipline:
- Social Sciences and Science
-
- Creator:
- Nunley, Hayden, Nagashima, Mikiko, Martin, Kamirah, Lorenzo Gonzalez, Alcides, Suzuki, Sachihiro C., Norton, Declan A., Wong, Rachel O. L., Raymond, Pamela A., and Lubensky, David K.
- Description:
- The most important part of this deposit is the code necessary for simulating the anisotropic phase-field crystal on a cone geometry. The second most important is the code for analyzing the simulation results, including the spatial distribution of Y-junctions in the simulated retinae. Included are simulation results in which we systematically scan both the undercooling parameters and the strength of noise in the initial conditions. Finally, we include an additional simulation example (as in Figure 7D). Please see readme file for description of main (MATLAB) functions used for simulating and analyzing simulations.
- Keyword:
- zebrafish cone mosaic, topological defects, grain boundaries, and phase-field crystal model
- Citation to related publication:
- Nunley, H., Nagashima, M., Martin, K., Gonzalez, A. L., Suzuki, S. C., Norton, D. A., Wong, R. O. L., Raymond, P. A., & Lubensky, D. K. (2020). Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLOS Computational Biology, 16(12), e1008437. https://doi.org/10.1371/journal.pcbi.1008437 and Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C. Suzuki, Declan Norton, Rachel O. L. Wong, Pamela A. Raymond, David K. Lubensky bioRxiv 806679; doi: https://doi.org/10.1101/806679
- Discipline:
- Science
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- Creator:
- Nunley, Hayden, Nagashima, Mikiko, Martin, Kamirah, Lorenzo Gonzalez, Alcides, Suzuki, Sachihiro C., Norton, Declan A., Wong, Rachel O. L., Raymond, Pamela A., and Lubensky, David K.
- Description:
- This dataset includes an example cell packing (containing ~20,000 cells). This example cell packing is the same cell packing in Supplementary Figure 11. The Corson_PBC_Square_Sweep_func.m is the main function for simulating lateral inhibition on this (and other) example packings. Please see readme for which simulation parameters may be tuned within this lateral inhibition function.
- Keyword:
- tissue patterning, lateral inhibition, and topological defect
- Citation to related publication:
- Nunley, H., Nagashima, M., Martin, K., Gonzalez, A. L., Suzuki, S. C., Norton, D. A., Wong, R. O. L., Raymond, P. A., & Lubensky, D. K. (2020). Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLOS Computational Biology, 16(12), e1008437. https://doi.org/10.1371/journal.pcbi.1008437 , Corson F, Couturier L, Rouault H, Mazouni K, Schweisguth F. Self-organized Notch dynamics generate stereotyped sensory organ patterns in Drosophila. Science. 2017 May 5;356(6337):eaai7407. doi: 10.1126/science.aai7407. Epub 2017 Apr 6. PMID: 28386027., and Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C. Suzuki, Declan Norton, Rachel O. L. Wong, Pamela A. Raymond, David K. Lubensky. Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation. bioRxiv 806679; doi: https://doi.org/10.1101/806679
- Discipline:
- Science
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- Creator:
- Hoover, Lindzey V
- Description:
- This study investigated co-occurrence among food addiction (FA), problematic substance use (alcohol, cannabis, cigarettes, nicotine vaping), parental history of problematic alcohol use, and obesity. Participants (n=357) completed self-report measures on food addiction, personal substance use, and parental history of alcohol use. Participants also completed demographic questions and self-reported height and weight were used to calculate BMI. Pearson zero-order correlations were conducted to identify sociodemographic covariates (socioeconomic status, age, and sex at birth). Modified Poisson regression (with robust standard error estimations) were used to estimate risk ratios among food addiction, parental history of problematic alcohol use, personal substance use (alcohol, cannabis, cigarettes, nicotine vaping), and obesity. Significance was set at p<.05. However, given multiple testing, 99% CI estimates are reported in the final manuscript instead of 95% CI estimates. Unadjusted and adjusted (for sociodemographic covariates) analyses were conducted. Risk of food addiction was higher in participants with problematic alcohol, smoking, vaping, parental history of problematic alcohol use, and (in unadjusted only) cannabis use. Risk of food addiction was only higher in participants with obesity after adjusting for covariates. Obesity was not significantly associated with problematic substance use and parental history or problematic alcohol use. Thus, food addiction, but not obesity, co-occurred with problematic substance use and a family history of problematic alcohol use. Results support the conceptualization of food addiction as an addictive disorder.
- Keyword:
- Food Addiction, Substance Use, Obesity, and Family History
- Citation to related publication:
- Hoover, L. V., Yu, H. P., Cummings, J. R., Ferguson, S. G., & Gearhardt, A. N. (2022). Co-occurrence of food addiction, obesity, problematic substance use, and parental history of problematic alcohol use. Psychology of Addictive Behaviors. Advance online publication. DOI: 10.1037/adb0000870
- Discipline:
- Social Sciences
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- Creator:
- Diaz-Espinosa, Jennifer, Stringer, Kathleen, and Rosania, Gus
- Description:
- These data were produced from a study that assessed mitochondrial metabolic function by measuring two metabolites, l-carnitine and acetylcarnitine, to determine their effectiveness as candidate clinical biomarkers for age-related, drug-induced alterations in mitochondrial metabolism. To study age and medication-related changes in mitochondrial metabolism, we administered the FDA-approved mitochondriotropic drug, clofazimine (CFZ), or vehicle for to young and old mice. These findings are described in our manuscript: Clofazimine-Mediated, Age-Related Changes in Skeletal Muscle Mitochondrial Metabolites. Data reported was supported by funding from the National Institute of General Medical Sciences (NIGMS) at the National Institutes of Health (NIH) under award numbers R01GM127787 (GRR), R35GM136312 (KAS), P30AR069620 (K Jepsen), and T32GM140223 (L Isom).
- Keyword:
- adverse drug reactions, mitochondrial metabolism, l-carnitine, acetylcarnitine, and cardiac muscle
- Citation to related publication:
- Metabolites 2023
- Discipline:
- Health Sciences
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- Creator:
- Marchman, Timothy, Dominique, Daniel, Zhang, Huayile, Daneshvar, Fariborz, and Murphy Kevin
- Description:
- We created various files, including GIS files and data files for both the UM Hydrologic Modeling Team and for our own Escherichia coli sampling project. The UM Hydrologic Team used the files we created to make their models more accurate. For example, we edited Clinton River subwatershed files to better reflect below and above-ground infrastructure, and provided them to the modeling team. For our own E. coli subproject we created time series, GIS files, and R code to better understand the influence of precipitation and streamflow on E. coli dynamics. Our time-series data is based on baseline and storm sampling we conducted in the summer of 2021. We used GIS files to explore the subwatersheds of our E. coli sampling locations. Finally, we created R code to help us visualize and analyze the data.
- Discipline:
- Science
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- Creator:
- Benjamin Leffel
- Description:
- Time series dataset of adoption by year of climate action plans by 177 U.S. cities, 2010-2019, with links to plans included. This dataset is intended for use by researchers and practitioners investigating both individual climate action plans and time series patterns of adoption at the municipal level.
- Keyword:
- climate change, climate action plan, municipal, and Urban Sustainability Research Group
- Discipline:
- Social Sciences and Government, Politics and Law
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Classical (6th-4th cent. BCE)
User Collection- Creator:
- Vani Archaeological Survey
- Description:
- Classical activity documented by the Vani Archaeological Survey
- Keyword:
- Classical
28Works -
- Creator:
- Ottaviani, Jim
- Description:
- This random sample of OA articles comes from Deep Blue <deepblue.lib.umich.edu/documents>, the University of Michigan’s institutional repository service. Each OA article has the following characteristics: Prior to a known date (ranging from 2006 to the 2013) these articles—the final published version—were only available by subscription. After that date, they became freely available via Deep Blue. Meanwhile, other articles from the same journal issue as the now-OA article continued to only be available to subscribers. None of the OA articles were self-selected; authors did not choose to deposit the articles in question in Deep Blue, since we made them open via blanket licensing agreements between the publishers and the library.
- Keyword:
- Open access publishing, Scientific publishing, Citation analysis, and Institutional repositories
- Citation to related publication:
- Ottaviani J (2016) The Post-Embargo Open Access Citation Advantage: It Exists (Probably), It’s Modest (Usually), and the Rich Get Richer (of Course). PLoS ONE 11(8): e0159614. https://doi.org/10.1371/journal.pone.0159614
- Discipline:
- Social Sciences