Search Constraints
Filtering by:
Language
English
Remove constraint Language: English
Resource type
Dataset
Remove constraint Resource type: Dataset
Number of results to display per page
View results as:
Search Results
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1760 x 1210 x 1 voxel at 0.01941239 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1678 TIF images (each 1760 x 1210 x 1 voxel at 0.019412 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987312630, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987312630
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Raw Dataset includes 1601 TIF images (each 898 x 983 x 1 voxel at 0.06401958 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Reconstructed Dataset includes 1948 TIF images (each 898 x 983 x 1 voxel at 0.064020 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Canidae, Nyctereutes procyonoides, 1987242635, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987242635
- Discipline:
- Science
-
- Creator:
- Bitzer, Markus
- Description:
- Kidney tissue was analyzed for spatial localization of features and associations with clinical parameters.
- Keyword:
- Kidney, Pathology, Human, and Image analysis
- Discipline:
- Health Sciences
-
- Creator:
- Hawes, Jason K
- Description:
- Most of this deposit is composed of a step-by-step explanation of how to replicate the work conducted in Chapters 2 and 5 of my dissertation (available in DeepBlue Documents under the title Urban Agriculture: Good for People, Places, and Planet?). Very little actual data is catalogued here, instead largely relying on links to the secondary datasets online. In fact, this is an intentional choice, since any replication would likely want updated data to produce more real-time results. This deposit is intended to accompany the dissertation and may not be the final version of these two manuscripts or their associated methods. For more up-to-date methods and analysis, please search Google Scholar or your affiliated library for Jason Hawes and some combination of keywords including urban agriculture, scaling-up, tradeoffs, or the names of the cities in question.
- Keyword:
- urban agriculture, tradeoffs, remote sensing, and multi-criteria analysis
- Discipline:
- Social Sciences
-
- Creator:
- Towne, Aaron, Saxton-Fox, Theresa, and Parthasarthy, Aadhy
- Description:
- This dataset contains experimental measurements of a zero-pressure-gradient flat-plate boundary layer at five different Reynolds numbers collected using particle image velocimetry. For each Reynolds number, the dataset contains approximately 6000 snapshots of planar velocity fields as well as raw particle image pairs. All data are stored within hdf5 files, and a Matlab script showing how the data can be read and manipulated is provided. Please see the ‘BLexp_README.pdf’ file for more information. We recommend using the ‘BLexp_example.zip’ file as an entry point to the dataset. and The dataset is part of “A database for reduced-complexity modeling of fluid flows” (see references below) and is intended to aid in the conception, training, demonstration, evaluation, and comparison of reduced-complexity models for fluid mechanics. The paper introduces the flow setup and computational methods, describes the available data, and provides an example of how these data can be used for reduced-complexity modeling. Users of these data should cite the papers listed below.
- Keyword:
- fluid mechanics
- Citation to related publication:
- Towne, A., Dawson, S., Brès, G. A., Lozano-Durán, A., Saxton-Fox, T., Parthasarthy, A., Biler, H., Jones, A. R., Yeh, C.-A., Patel, H., Taira, K. (2022). A database for reduced-complexity modeling of fluid flows. AIAA Journal 61(7): 2867-2892.
- Discipline:
- Engineering and Science
-
- Creator:
- Herzog, Joshua M, Verkade, Angela, and Sick, Volker
- Description:
- Data deposited here includes 60 image sets (30 individual participants, and 2 eyes per individual) consisting of raw fluorescence images, diffuse reflection images using ambient lighting, images used for correction, and calibration, and metadata. Images are split into two wavelength bands as described in the methodology. Raw images are stored in Hierarchical Data Format 5 (HDF5) file nodes (one file per eye) and each image node contains a tag for frame rate, exposure duration, and timestamp (stored in ImageData.zip). Summary statistics including demographic data, participant-reported diseases (e.g., diabetes, keratoconus), and pupil size are also stored in a text-based comma-separated table and as an Excel spreadsheet. Finally, 2-channel pseudocolor images and ratiometric grayscale images combining the two fully-processed image bands are stored as portable network graphics (PNG) files (stored in PseudocolorImages.zip).
- Keyword:
- Fluorescence, Imaging, Ocular lens, Corneal disease, Cataract, and Diabetes
- Citation to related publication:
- Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Corneal shadowgraphy: a simple, low-cost, rapid, and quantitative tool with potential clinical utility." Manuscript in review. 2024. and Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Quantitative and rapid in vivo imaging of human lenticular fluorescence." Manuscript in review. 2024.
- Discipline:
- Health Sciences and Engineering
-
- Creator:
- Su, Xue, Zhang, Youxue, and Liu, Yang
- Description:
- Our recent investigations have discovered inward diffusion (in-gassing) of moderately volatile elements (MVEs; e.g., Na, K and Cu) from volcanic gas into volcanic beads/droplets. In this work, we examine the distribution of sulfur in lunar orange glass beads. Our analyses reveal that sulfur exhibits a non-uniform distribution across the beads, forming "U" or "W" shaped profiles typical of in-gassing. A model developed to assess sulfur contributions from different sources (original magmatic sulfur versus atmospheric in-gassed sulfur) in the orange beads indicates that atmospheric sulfur in-gassed during eruption contributes approximately 9–24% to the total sulfur content of an orange bead, averaging around 16%. This in-gassed sulfur is derived from the eruption plume, where atmospheric sulfur could undergo photochemical reactions induced by UV light, leading to mass independent fractionation and a distinct sulfur isotope signature. Interestingly, a recent study discovered a small mass independent isotope fractionation of sulfur in lunar orange glass beads in drive tube 74002/1 and a lack of such mass independent isotope fractionation in black glass beads in the same lunar sample. This finding contrasts with sulfur in lunar basalts, which typically exhibit mass dependent fractionation. With our work, the observed mass independent fractionation signal in sulfur isotopes of orange beads can be attributed to the in-gassing of photolytic sulfur in the optically thin part of the eruption plume where UV light can penetrate. Using the sulfur isotope data of lunar orange beads, we estimate that the Δ33S value of atmospheric sulfur is approximately −0.18‰. Our study provides new insights into the complex dynamics of volatile elements in lunar volcanic processes, highlighting the role of in-gassing in shaping sulfur isotope signatures in volcanic glass beads.
- Keyword:
- Moon, Lunar orange glass beads, Sulfur, Sulfur isotope, Diffusion, Outgassing and in-gassing, Mass independent fractionation, and Eruption plume
- Citation to related publication:
- Su, X., Zhang, Y., Liu, Y. (2024) Sulfur Outgassing and In-gassing in Lunar Orange Glass Beads and Implications for 33S “Anomaly” in the Moon. (under review)
- Discipline:
- Science
-
- Creator:
- Reynolds, Mack B, Klein, Benjamin, McFadden, Michael J, Judge, Norah K, Navarrete, Hannah E, Michmerhuizen, Britton C, Awad, Dominik, Schultz, Tracey L, Harms, Paul W, Zhang, Li, O'Meara, Teresa R, Sexton, Jonathan Z, Lyssiotis, Costas A, Kahlenberg, J Michelle, and O'Riordan, Mary X
- Description:
- Targeted metabolomics analysis of primary WT murine bone marrow-derived macrophages (BMDM) mock-treated or infected with methicillin-resistant Staphylococcus aureus (MRSA) (File S1). Targeted metabolomics analysis of mock-treated or MRSA-infected WT or Ifnar1-/- iBMDM (File S2).
- Keyword:
- Metabolomics, Macrophage, Staphylococcus aureus, and Interferon
- Citation to related publication:
- Type I interferon governs immunometabolic checkpoints that coordinate inflammation during Staphylococcal infection Mack B. Reynolds, Benjamin Klein, Michael J. McFadden, Norah K. Judge, Hannah E. Navarrete, Britton C Michmerhuizen, Dominik Awad, Tracey L. Schultz, Paul W. Harms, Li Zhang, Teresa R. O’Meara, Jonathan Z. Sexton, Costas A. Lyssiotis, J. Michelle Kahlenberg, Mary X. O’Riordan bioRxiv 2024.01.10.575104; doi: https://doi.org/10.1101/2024.01.10.575104 and Reynolds et al., Type I Interferon governs immunometabolic checkpoints that coordinate inflammation during Staphylococcal infection, Cell Reports (2024), https://doi.org/10.1016/j.celrep.2024.114607
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:100776 (Erignathus barbatus barbatus) - Skull. Raw Dataset includes 1601 TIF images (each 1385 x 1900 x 1 voxel at 0.09676982 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:100776 (Erignathus barbatus barbatus) - Skull. Reconstructed Dataset includes 1440 TIF images (each 1385 x 1900 x 1 voxel at 0.096770 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Phocidae, Erignathus barbatus barbatus, 1987312444, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987312444
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:103505 (Erignathus barbatus NAUTICA) - Skull. Raw Dataset includes 1601 TIF images (each 1346 x 1927 x 1 voxel at 0.1103895 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:103505 (Erignathus barbatus NAUTICA) - Skull. Reconstructed Dataset includes 1497 TIF images (each 1346 x 1927 x 1 voxel at 0.110390 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Phocidae, Erignathus barbatus NAUTICA, 1987269380, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987269380
- Discipline:
- Science