Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1237 x 1972 x 1 voxel at 0.01845421 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1363 TIF images (each 1237 x 1972 x 1 voxel at 0.018454 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 771 x 848 x 1 voxel at 0.03842772 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1930 TIF images (each 771 x 848 x 1 voxel at 0.038428 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1410 x 1429 x 1 voxel at 0.01845421 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1783 TIF images (each 1410 x 1429 x 1 voxel at 0.018454 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 926 x 1417 x 1 voxel at 0.03361506 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1951 TIF images (each 926 x 1417 x 1 voxel at 0.033615 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1760 x 1210 x 1 voxel at 0.01941239 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1678 TIF images (each 1760 x 1210 x 1 voxel at 0.019412 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Raw Dataset includes 1601 TIF images (each 898 x 983 x 1 voxel at 0.06401958 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Reconstructed Dataset includes 1948 TIF images (each 898 x 983 x 1 voxel at 0.064020 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
Most of this deposit is composed of a step-by-step explanation of how to replicate the work conducted in Chapters 2 and 5 of my dissertation (available in DeepBlue Documents under the title Urban Agriculture: Good for People, Places, and Planet?). Very little actual data is catalogued here, instead largely relying on links to the secondary datasets online. In fact, this is an intentional choice, since any replication would likely want updated data to produce more real-time results. This deposit is intended to accompany the dissertation and may not be the final version of these two manuscripts or their associated methods. For more up-to-date methods and analysis, please search Google Scholar or your affiliated library for Jason Hawes and some combination of keywords including urban agriculture, scaling-up, tradeoffs, or the names of the cities in question.
This dataset contains experimental measurements of a zero-pressure-gradient flat-plate boundary layer at five different Reynolds numbers collected using particle image velocimetry. For each Reynolds number, the dataset contains approximately 6000 snapshots of planar velocity fields as well as raw particle image pairs. All data are stored within hdf5 files, and a Matlab script showing how the data can be read and manipulated is provided. Please see the ‘BLexp_README.pdf’ file for more information. We recommend using the ‘BLexp_example.zip’ file as an entry point to the dataset. and The dataset is part of “A database for reduced-complexity modeling of fluid flows” (see references below) and is intended to aid in the conception, training, demonstration, evaluation, and comparison of reduced-complexity models for fluid mechanics. The paper introduces the flow setup and computational methods, describes the available data, and provides an example of how these data can be used for reduced-complexity modeling. Users of these data should cite the papers listed below.
Towne, A., Dawson, S., Brès, G. A., Lozano-Durán, A., Saxton-Fox, T., Parthasarthy, A., Biler, H., Jones, A. R., Yeh, C.-A., Patel, H., Taira, K. (2022). A database for reduced-complexity modeling of fluid flows. AIAA Journal 61(7): 2867-2892.
Data deposited here includes 60 image sets (30 individual participants, and 2 eyes per individual) consisting of raw fluorescence images, diffuse reflection images using ambient lighting, images used for correction, and calibration, and metadata. Images are split into two wavelength bands as described in the methodology. Raw images are stored in Hierarchical Data Format 5 (HDF5) file nodes (one file per eye) and each image node contains a tag for frame rate, exposure duration, and timestamp (stored in ImageData.zip).
Summary statistics including demographic data, participant-reported diseases (e.g., diabetes, keratoconus), and pupil size are also stored in a text-based comma-separated table and as an Excel spreadsheet. Finally, 2-channel pseudocolor images and ratiometric grayscale images combining the two fully-processed image bands are stored as portable network graphics (PNG) files (stored in PseudocolorImages.zip).
Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Corneal shadowgraphy: a simple, low-cost, rapid, and quantitative tool with potential clinical utility." Manuscript in review. 2024. and Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Quantitative and rapid in vivo imaging of human lenticular fluorescence." Manuscript in review. 2024.