Index Catalog // Deep Blue Data

Need language around using Deep Blue Data as a repository for your NIH data sharing plan? See Data Sharing Boilerplate

Start Over

Filtering by: Creator Dick, Christopher W. Creator Bemmels, Jordan B. Keyword eastern North America

Data from "Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two eastern North American hickory species"

Creator:

Bemmels, Jordan B. and Dick, Christopher W.

Description:

Raw SNP genotypes are provided in STRUCTURE format, with a maximum of one SNP reported per ddRAD locus. The files "caryco_SNP.str" and "caryov_SNP.str" are genotypes for Carya cordiformis and Carya ovata, respectively. The first column of each file is the individual name, the second column is the population (see original publication for information on population locations), and the remaining columns are genotypes of individual SNPs. Rows represent individuals, with the diploid genotypes contained on two lines per individual. Missing data are entered as "0" (zero). The first row is a header with a unique identifier for each SNP. and Occurrence records for each species are provided in the file "occs_carya.csv" and contain the latitude and longitude of each record.

Keyword:

eastern North America, glacial refugia, phylogeography, temperate trees, and single nucleotide polymorphisms

Citation to related publication:

Bemmels, J.B., and C.W. Dick. 2018. Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two North American hickory species. Journal of Biogeography, 45: 1739– 1750. https://doi.org/10.1111/jbi.13358

Discipline:

Science