Search Constraints
1 - 3 of 3
Number of results to display per page
View results as:
Search Results
-
- Creator:
- Crowell, Hayley L . , Curlis, John David, Weller, Hannah I., and Davis Rabosky, Alison R.
- Description:
- Ultraviolet (UV) wavelengths invisible to humans are primarily studied in the context of reproduction and social signaling. This narrow focus can arise from bias in taxa studied, which are often brightly colored in human-visible wavelengths. Our research describes undocumented UV color patterns across 110 diverse species of Western Hemisphere snakes and tests the hypothesized roles of reproduction versus predator avoidance in the evolution of UV coloration. Phylogenetically-informed tests of life stage, sex, and habitat showed unexpected support for the predator defense hypothesis, with pronounced differences in snake conspicuousness explained by UV coloration. UV reflectance was not predictable from any aspect of visible color pattern, suggesting high potential for transformative discoveries in other “cryptically-colored” lineages across the tree of life.
- Keyword:
- color, ecology, evolution, predators, snakes, and ultraviolet
- Citation to related publication:
- Crowell, H. L., Curlis, J. D., Weller, H. I., & Davis Rabosky, A. R. (2024). Ecological drivers of ultraviolet colour evolution in snakes. Nature Communications, 15(1), 5213. http://doi.org/10.1038/s41467-024-49506-4
- Discipline:
- Science
-
- Creator:
- Song, Siliang and Zhang, Jianzhi
- Description:
- Fitness landscapes map genotypes to their corresponding fitness under given environments and allow explaining and predicting evolutionary trajectories. Of particular interest is the landscape ruggedness or the unevenness of the landscape, because it impacts many aspects of evolution such as the likelihood that a population is trapped in a local fitness peak. Although the ruggedness has been inferred from a number of empirically mapped fitness landscapes, it is unclear to what extent this inference is affected by fitness estimation error, which is inevitable in the experimental determination of fitness landscapes. Here we address this question by simulating fitness landscapes under various theoretical models, with or without fitness estimation error. We find that all eight examined measures of landscape ruggedness are overestimated due to imprecise fitness quantification, but different measures are affected to different degrees. We devise a method to use replicate fitness measures to correct this bias and show that our method performs well under realistic conditions. We conclude that previously reported fitness landscape ruggedness is likely upward biased owing to the negligence of fitness estimation error and advise that future fitness landscape mapping should include at least three biological replicates to permit an unbiased inference of the ruggedness.
- Keyword:
- adaptation, estimation error, evolution, NK model, Rough Mount Fuji model, and polynomial model
- Discipline:
- Science
-
- Creator:
- Hodgins-Davis, Andrea, Duveau, Fabien, Walker, Elizabeth, and Wittkopp, Patricia J
- Description:
- Understanding how phenotypes evolve requires disentangling the effects of mutation generating new variation from the effects of selection filtering it. Tests for selection frequently assume that mutation introduces phenotypic variation symmetrically around the population mean, yet few studies have tested this assumption by deeply sampling the distributions of mutational effects for particular traits. Here, we examine distributions of mutational effects for gene expression in the budding yeast Saccharomyces cerevisiae by measuring the effects of thousands of point mutations introduced randomly throughout the genome. We find that the distributions of mutational effects differ for the ten genes surveyed and are inconsistent with normality. For example, all ten distributions of mutational effects included more mutations with large effects than expected for normally distributed phenotypes. In addition, some genes also showed asymmetries in their distribution of mutational effects, with new mutations more likely to increase than decrease the gene’s expression or vice versa. Neutral models of regulatory evolution that take these empirically determined distributions into account suggest that neutral processes may explain more expression variation within natural populations than currently appreciated.
- Keyword:
- gene expression, evolution, mutation, mutagenesis, regulatory evolution, YFP, reporter construct, yeast, TDH1, TDH2, TDH3, GPD1, OST1, PFY1, STM1, RNR1, and RNR2
- Citation to related publication:
- Hodgins-Davis, A., Duveau, F., Walker, E. A., & Wittkopp, P. J. (2019). Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae. BioRxiv, 551804. https://doi.org/10.1101/551804
- Discipline:
- Science