Index Catalog // Deep Blue Data

EEG Datasets for Naturalistic Listening to "Alice in Wonderland"

Creator:: Brennan, Jonathan R.
Description:: These files contain the raw data and processing parameters to go with the paper "Hierarchical structure guides rapid linguistic predictions during naturalistic listening" by Jonathan R. Brennan and John T. Hale. These files include the stimulus (wav files), raw data (matlab format for the Fieldtrip toolbox), data processing paramters (matlab), and variables used to align the stimuli with the EEG data and for the statistical analyses reported in the paper.
Keyword:: linguistics, syntax, language, and eeg
Discipline:: Social Sciences

Demand response algorithms to improve electric power system stability margins

Creator:: Yao, Mengqi, Mathieu, Johanna L., Hiskens, Ian A., Molzahn, Daniel K., Koorehdavoudi, Kasra , and Roy, Sandip
Description:: The files include all the published paper and presentation source codes. Please install Matpower before running the code. The Matpower version is 5.1, which can be found in https://matpower.org/download/ Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/150104
Keyword:: Demand response, Optimal power flow, Power system voltage stability, and Power system small signal stability L
Discipline:: Engineering

Metal pad instability in liquid metal batteries. animations of computed flow regimes

Creator:: Linyan, Xiang and Oleg, Zikanov
Description:: The Liquid Metal Battery (LMB), a promising energy-storage device that contains liquid-metal interior, is studied numerically in the paper. The metal pad roll instability was modeled based on the open-source CFD software, OpenFOAM. It's based on the solver for simulations of incompressible multiphase flows multiphaseInterFoam modified to include the electromagnetic fields and account for the sharp variations of the electrical conductivity.
Keyword:: Liquid metal battery, Interfacial waves, Instability, and OpenFOAM
Discipline:: Science

Epileptogenesis modulates spontaneous and responsive brain state dynamics - Code & Data

Creator:: Crisp, Dakota N., Cheung, Warwick, Gliske, Stephen V., Lai, Alan, Freestone, Dean R., Grayden, David B., Cook, Mark J., and Stacey, William C.
Description:: The data and the scripts are to show that seizure onset dynamics and evoked responses change over the progression of epileptogenesis defined in this intrahippocampal tetanus toxin rat model. All tests explored in this study can be repeated with the data and scripts included in this repository. and Dataset citation: Crisp, D.N., Cheung, W., Gliske, S.V., Lai, A., Freestone, D.R., Grayden, D.B., Cook, MJ., Stacey, W.C. (2019). Epileptogenesis modulates spontaneous and responsive brain state dynamics [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/r6vg-9658
Keyword:: evoked response, stimulation, bifurcation, epilepsy, seizure, divergence, and dynamics
Discipline:: Health Sciences, Engineering, and Science

Equilibrium Path Sampling Data for Two Glycosynthetic Reactions of Thermatoga maratima Alpha-L-Fucosidase D224G

Creator:: Burgin, Tucker and Mayes, Heather B.
Description:: This project aimed to discover and analyze the molecular mechanism of synthesis of two particular fucosylated oligosaccharide products in a mutant enzyme, Thermatoga maratima Alpha-L-Fucosidase D224G, whose wild type performs the opposite reaction (cleavage of fucosyl glycosidic bonds). Discovery of the mechanism was performed using an unbiased simulations method known as aimless shooting, whereas analysis of the mechanism in terms of the energy profile was performed using a separate method known as equilibrium path sampling. The data here concerns the latter method. and The contents of the atesa_master.zip are the ATESA GitHub project. A Python program for automating transition path sampling with aimless shooting using Amber. https://github.com/team-mayes/atesa
Keyword:: Equilibrium Path Sampling, Transition Path Sampling, Enzymatic Mechanism, and GH29
Discipline:: Engineering

Multi-Sense embeddings through a word sense disambiguation process

Creator:: Ruas, Terry, Grosky, William, and Aizawa, Akiko
Description:: This data set is a collection of word similarity benchmarks (RG65, MEN3K, Wordsim 353, simlex999, SCWS, yp130, simverb3500) in their original format and converted into a cosine similarity scale. In addition, we have two Wikpedia Dumps from 2010 (April) and 2018 (January) in which we provide the original format (raw words), converted using the techniques described in the paper (MSSA, MSSA-D and MSSA-NR) (title in this repository), and also the word embeddings models for 300d and 1000d using a word2vec implementation. A readme.txt is provided with more details for each file.
Keyword:: multi-sense embeddings, MSSA, word2vec, wikipedia dump, synset, and natural language processing
Discipline:: Other

Epidynamics: Navigating the map of seizure dynamics - Code & Data

Creator:: Crisp, Dakota N., Saggio, Maria L., Scott, Jared, Stacey, William C., Nakatani, Mitsuyoshi, Gliske, Stephen V., and Lin, Jack
Description:: This data and scripts are meant to test and show seizure differentiation based on bifurcation theory. A zip file is included which contains real and simulated seizure waveforms, Matlab scripts, and metadata. The matlab scripts allow for visual review validation and objective feature analysis. The file “README.txt” provides more detail about each individual file within the zip file. and Data citation: Crisp, D.N., Saggio, M.L., Scott, J., Stacey, W.C., Nakatani, M., Gliske, S.F., Lin, J. (2019). Epidynamics: Navigating the map of seizure dynamics - Code & Data [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/ejhy-5h41
Keyword:: Bifurcation, Epilepsy, Seizure, and Divergence
Discipline:: Science, Engineering, and Health Sciences

Dataset related to 'Effects of Metamorphism and Metasomatism on Manganese Mineralogy: Examples from the Transvaal Supergroup'

Creator:: Johnson, Jena E., Webb, Samuel M., Condit, Cailey B., Beukes, Nicolas J., and Fischer, Woodward W.
Description:: Manganese in the sedimentary record has been interpreted by many as a powerful redox proxy for paleoenvironments, and yet very little work has been done to ensure that the manganese-rich minerals in the rock record are actually recording primary signals. In the accompanying manuscript, we present an in-depth characterization of the manganese mineralogy from two correlated regions recording the Transvaal Supergroup in South Africa with markedly different alteration histories to investigate if there can be post-depositional emplacement of manganese-rich minerals. The data uploaded here are X-ray absorption spectra of (1) manganese standard minerals that were useful in our analyses and (2) minerals from an important well-characterized sample that may be useful as comparative standards in future studies.
Keyword:: manganese and X-ray absorption spectroscopy
Discipline:: Science

Lexical spreadsheets Jalkunan language of Burkina Faso

Creator:: Heath, Jeffrey
Description:: Jalkunan is an endangered language of the Mande family, spoken in the village cluster of Blédougou in southwestern Burkina Faso. The lexical work complements a published grammar with texts. See the readme for further information.
Keyword:: Jalkunan, Burkina Faso, Mande languages, and Lexicon
Discipline:: Humanities

Lexical spreadsheets Bangime language of Mali

Creator:: Heath, Jeffrey, Hantgan, Abbie , and Elders, Stefan
Description:: The work on the Bangime language, spoken by the Bangande people, was carried out as part of a larger linguistic fieldwork project focused on Dogon languages. Bangime is confirmed as a language isolate with no demonstrable linguistic relatives—possibly the only such isolate in West Africa.
Keyword:: Bangime, Mali, and Lexicon
Discipline:: Humanities

EEG Datasets for Naturalistic Listening to "Alice in Wonderland"

Demand response algorithms to improve electric power system stability margins

Metal pad instability in liquid metal batteries. animations of computed flow regimes

Epileptogenesis modulates spontaneous and responsive brain state dynamics - Code & Data

Equilibrium Path Sampling Data for Two Glycosynthetic Reactions of Thermatoga maratima Alpha-L-Fucosidase D224G

Multi-Sense embeddings through a word sense disambiguation process

Epidynamics: Navigating the map of seizure dynamics - Code & Data

Dataset related to 'Effects of Metamorphism and Metasomatism on Manganese Mineralogy: Examples from the Transvaal Supergroup'

Lexical spreadsheets Jalkunan language of Burkina Faso

Lexical spreadsheets Bangime language of Mali

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