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- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:102504 (Glirulus JAPONICUS) - Skull. Raw Dataset includes 1601 TIF images (each 1753 x 1433 x 1 voxel at 0.0207215 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:102504 (Glirulus JAPONICUS) - Skull. Reconstructed Dataset includes 718 TIF images (each 1753 x 1433 x 1 voxel at 0.020722 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Gliridae, Glirulus JAPONICUS, 1987308132, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987308132
- Discipline:
- Science
-
- Creator:
- Penner-Hahn, James E, Alonso Mori, Roberto, Ardana-Lamas, Fernando , Biednov, Mykola , Chung, Taewon , Deb, Aniruddha, Jiang, Yifeng , Kaneshiro, April K. , Khakhulin, Dmitry , Kubarych, Kevin J. , Lamb, Ryan, Lima, Frederico Alves , McClain, Taylor P. , Meadows, Joseph H. , Michocki, Lindsay, Miller, Nicholas A. , Otte, Florian , Sension, Roseanne J, Sofferman, Danielle L. , Song, Sanghoon , Uemura, Yohei , and van Driel, Tim Brandt
- Description:
- The dataset contains the numerical data used to produce figures 2-14 and S1-S8 (Figure 1 is purely schematic and is uploaded as a tif file for completeness - it does not contain any new data). These files contain the transient UV-visible, X-ray absorption, and X-ray emission data that were used to characterize the dynamics of methyl cobalamin at neutral pH and to compare this to adenosyl cobalamin. Details of data collection and reduction are provided in the associated manuscript. Data files are all text files which contain tab-delimited columns of data corresponding to each figure in the manuscript.
- Keyword:
- Ultrafast, X-ray , Transient absorption , cobalamin , vitamin , B12 , XAS , XANES, and XES
- Citation to related publication:
- Journal of Physical Chemistry B, https://pubs.acs.org/doi/10.1021/acs.jpcb.4c03729
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:156532 (Chibchanomys TRICHOTIS) - Skull. Raw Dataset includes 1601 TIF images (each 604 x 629 x 1 voxel at 0.02709389 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:156532 (Chibchanomys TRICHOTIS) - Skull. Reconstructed Dataset includes 1578 TIF images (each 604 x 629 x 1 voxel at 0.027094 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Chibchanomys TRICHOTIS, 1987287888, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987287888
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- The scanned humerus is an isolated element that is referred to the pterosaur Arambourgiania philadelphiae. The element is accessioned to Yarmouk University (YUPC-RUSEIFA-1) in the Hashemite Kingdom of Jordan. The specimen was collected from Late Cretaceous-aged sediments at the Ruseifa Quarry in central Jordan. For inquiries about access to the specimen, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of this element of Arambourgiania are available at the University of Michigan Museum of Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Citation to related publication:
- Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- The scanned proximal left humerus is part of an associated skeleton of the pterosaur Inabtanin alarabia, accessioned to Yarmouk University (YUPC-INAB-6-001–010) in the Hashemite Kingdom of Jordan. The specimen was collected from Late Cretaceous-aged sediments near Tal Inab in south-central Jordan, which is 34 km north of the current border with Saudi Arabia. For inquiries about access, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of this and other elements of Inabtanin are available at the University of Michigan Museum of Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Citation to related publication:
- Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- The scanned distal right humerus is part of an associated skeleton of the pterosaur Inabtanin alarabia, accessioned to Yarmouk University (YUPC-INAB-6-001–010) in the Hashemite Kingdom of Jordan. The specimen was collected from Late Cretaceous-aged sediments near Tal Inab in south-central Jordan, which is 34 km north of the current border with Saudi Arabia. For inquiries about access, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of this and other elements of Inabtanin alarabia are available at the University of Michigan Museum of Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Citation to related publication:
- Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- The 3D model of the humerus was created from an isolated element that is referred to the pterosaur Arambourgiania philadelphiae. The element is accessioned to Yarmouk University (YUPC-RUSEIFA-1) in the Hashemite Kingdom of Jordan. The specimen was collected from Late Cretaceous-aged sediments at the Ruseifa Quarry in central Jordan. For inquiries about access to the specimen, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of this element of Arambourgiania are available at the University of Michigan Museum of Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Citation to related publication:
- Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- The left humerus is part of an associated skeleton of the pterosaur Inabtanin alarabia, accessioned to Yarmouk University (YUPC-INAB-6-001–010) in the Hashemite Kingdom of Jordan. The specimen was collected from Late Cretaceous-aged sediments near Tal Inab in south-central Jordan, which is 34 km north of the current border with Saudi Arabia. For inquiries about access, please contact Jeff Wilson Mantilla ( wilsonja@umich.edu) or Iyad Zalmout ( izalmout@ksu.edu.sa). Casts of this and other elements of Inabtanin alarabia are available at the University of Michigan Museum of Paleontology.
- Keyword:
- Jordan pterosaur cretaceous vertebrate gondwana afro-arabia paleontology
- Citation to related publication:
- Rosenbach, K. L., D. M. Goodvin, M. G. Albshysh, H. A. Azzam, A. A. Smadi, H. A. Mustafa, I. S. A. Zalmout, and J. A. Wilson Mantilla. [in press] New pterosaur remains from the Late Cretaceous of Afro-Arabia provide insight into flight capacity of large pterosaurs. Journal of Vertebrate Paleontology.
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:39512 (Caracal aurata) - Skull. Raw Dataset includes 1601 TIF images (each 1330 x 1943 x 1 voxel at 0.08283362 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:39512 (Caracal aurata) - Skull. Reconstructed Dataset includes 1204 TIF images (each 1330 x 1943 x 1 voxel at 0.082834 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Felidae, Caracal aurata, 1987234412, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987234412
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 858 x 1378 x 1 voxel at 0.03537455 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1775 TIF images (each 858 x 1378 x 1 voxel at 0.035375 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987306057, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987306057
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1237 x 1972 x 1 voxel at 0.01845421 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166879 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1363 TIF images (each 1237 x 1972 x 1 voxel at 0.018454 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987306057, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987306057
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 771 x 848 x 1 voxel at 0.03842772 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1930 TIF images (each 771 x 848 x 1 voxel at 0.038428 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987283573, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987283573
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1410 x 1429 x 1 voxel at 0.01845421 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166890 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1783 TIF images (each 1410 x 1429 x 1 voxel at 0.018454 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987283573, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987283573
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 926 x 1417 x 1 voxel at 0.03361506 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1951 TIF images (each 926 x 1417 x 1 voxel at 0.033615 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987312630, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987312630
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Raw Dataset includes 3141 TIF images (each 1760 x 1210 x 1 voxel at 0.01941239 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:166894 (Blarina brevicauda kirtlandi) - WholeBody. Reconstructed Dataset includes 1678 TIF images (each 1760 x 1210 x 1 voxel at 0.019412 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Blarina brevicauda kirtlandi, 1987312630, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987312630
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Raw Dataset includes 1601 TIF images (each 898 x 983 x 1 voxel at 0.06401958 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:116648 (Nyctereutes procyonoides) - Skull. Reconstructed Dataset includes 1948 TIF images (each 898 x 983 x 1 voxel at 0.064020 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Canidae, Nyctereutes procyonoides, 1987242635, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987242635
- Discipline:
- Science
-
- Creator:
- Bitzer, Markus
- Description:
- Kidney tissue was analyzed for spatial localization of features and associations with clinical parameters.
- Keyword:
- Kidney, Pathology, Human, and Image analysis
- Discipline:
- Health Sciences
-
- Creator:
- Hawes, Jason K
- Description:
- Most of this deposit is composed of a step-by-step explanation of how to replicate the work conducted in Chapters 2 and 5 of my dissertation (available in DeepBlue Documents under the title Urban Agriculture: Good for People, Places, and Planet?). Very little actual data is catalogued here, instead largely relying on links to the secondary datasets online. In fact, this is an intentional choice, since any replication would likely want updated data to produce more real-time results. This deposit is intended to accompany the dissertation and may not be the final version of these two manuscripts or their associated methods. For more up-to-date methods and analysis, please search Google Scholar or your affiliated library for Jason Hawes and some combination of keywords including urban agriculture, scaling-up, tradeoffs, or the names of the cities in question.
- Keyword:
- urban agriculture, tradeoffs, remote sensing, and multi-criteria analysis
- Discipline:
- Social Sciences
-
- Creator:
- Towne, Aaron, Saxton-Fox, Theresa, and Parthasarthy, Aadhy
- Description:
- This dataset contains experimental measurements of a zero-pressure-gradient flat-plate boundary layer at five different Reynolds numbers collected using particle image velocimetry. For each Reynolds number, the dataset contains approximately 6000 snapshots of planar velocity fields as well as raw particle image pairs. All data are stored within hdf5 files, and a Matlab script showing how the data can be read and manipulated is provided. Please see the ‘BLexp_README.pdf’ file for more information. We recommend using the ‘BLexp_example.zip’ file as an entry point to the dataset. and The dataset is part of “A database for reduced-complexity modeling of fluid flows” (see references below) and is intended to aid in the conception, training, demonstration, evaluation, and comparison of reduced-complexity models for fluid mechanics. The paper introduces the flow setup and computational methods, describes the available data, and provides an example of how these data can be used for reduced-complexity modeling. Users of these data should cite the papers listed below.
- Keyword:
- fluid mechanics
- Citation to related publication:
- Towne, A., Dawson, S., Brès, G. A., Lozano-Durán, A., Saxton-Fox, T., Parthasarthy, A., Biler, H., Jones, A. R., Yeh, C.-A., Patel, H., Taira, K. (2022). A database for reduced-complexity modeling of fluid flows. AIAA Journal 61(7): 2867-2892.
- Discipline:
- Engineering and Science
-
- Creator:
- Herzog, Joshua M, Verkade, Angela, and Sick, Volker
- Description:
- Data deposited here includes 60 image sets (30 individual participants, and 2 eyes per individual) consisting of raw fluorescence images, diffuse reflection images using ambient lighting, images used for correction, and calibration, and metadata. Images are split into two wavelength bands as described in the methodology. Raw images are stored in Hierarchical Data Format 5 (HDF5) file nodes (one file per eye) and each image node contains a tag for frame rate, exposure duration, and timestamp (stored in ImageData.zip). Summary statistics including demographic data, participant-reported diseases (e.g., diabetes, keratoconus), and pupil size are also stored in a text-based comma-separated table and as an Excel spreadsheet. Finally, 2-channel pseudocolor images and ratiometric grayscale images combining the two fully-processed image bands are stored as portable network graphics (PNG) files (stored in PseudocolorImages.zip).
- Keyword:
- Fluorescence, Imaging, Ocular lens, Corneal disease, Cataract, and Diabetes
- Citation to related publication:
- Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Corneal shadowgraphy: a simple, low-cost, rapid, and quantitative tool with potential clinical utility." Manuscript in review. 2024. and Herzog, Joshua M., Verkade, Angela, and Sick, Volker. "Quantitative and rapid in vivo imaging of human lenticular fluorescence." Manuscript in review. 2024.
- Discipline:
- Health Sciences and Engineering