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- Creator:
- Bellile, Emily L, Taylor, Jeremy MG, and Wolf, Gregory T
- Description:
- The University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) included an epidemiology project that approached every previously untreated adult head and neck squamous carcinoma (HNSCC) patient evaluated in the multidisciplinary Head and Neck Oncology Program of the University of Michigan (UM; Ann Arbor, MI) Comprehensive Cancer Center for participation in our longitudinal epidemiology study. This analytic dataset includes the most commonly requested covariates and outcome variables for survival analysis of this cohort of HNSCC patients. Data cleaning and creation of this analysis dataset was performed with SAS software v 9.3 (Carey,NC) by a biostatistician supporting multiple projects in the University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) and is available in RedCap for UM investigators to join with discipline specific data collected on the same cohort through a de-identified ID link.
- Keyword:
- Head and Neck Cancer, HNSCC, Squamous Cell Cancer, Epidemiology, Head and Neck Specialized Program of Research Excellence (SPORE). , Cancer, Prognosis, and Survival Analysis
- Citation to related publication:
- Cigarette use, comorbidities, and prognosis in a prospective head and neck squamous cell carcinoma population. Peterson LA, Bellile EL, Wolf GT, Virani S, Shuman AG, Taylor JM, Rozek LS; University of Michigan Head and Neck Specialized Program of Research Excellence Program. Head Neck. 2016 Dec;38(12):1810-1820. doi: 10.1002/hed.24515. Epub 2016 Jul 19. PMID: 27432208. , Development and Assessment of a Model for Predicting Individualized Outcomes in Patients With Oropharyngeal Cancer. Beesley LJ, Shuman AG, Mierzwa ML, Bellile EL, Rosen BS, Casper KA, Ibrahim M, Dermody SM, Wolf GT, Chinn SB, Spector ME, Baatenburg de Jong RJ, Dronkers EAC, Taylor JMG. JAMA Netw Open. 2021 Aug 2;4(8):e2120055. doi: 10.1001/jamanetworkopen.2021.20055. PMID: 34369988., Amlani, L; Bellile, E; Spector, M; Smith, J; Brenner, C; Rozek, L; Nguyen, A; Zarins, K; Thomas, D; McHugh, J; Taylor, J; Wolf, GT. Expression of p53 and prognosis in patients with head and neck squamous cell carcinoma (HNSCC); Int J Cancer Clin Res 2019, 6:122. DOI: 10.23937/2378-3419/1410122., and Spector ME, Bellile E, Amlani L, Zarins K, Smith J, Brenner JC, Rozek L, Nguyen A, Thomas D, McHugh JB, Taylor JMG, Wolf GT; University of Michigan Head and Neck SPORE Program. Prognostic Value of Tumor-Infiltrating Lymphocytes in Head and Neck Squamous Cell Carcinoma. JAMA Otolaryngol Head Neck Surg. 2019 Nov 1;145(11):1012-1019. doi: 10.1001/jamaoto.2019.2427. PMID: 31486841; PMCID: PMC6735419.
- Discipline:
- Science and Health Sciences
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- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for navicular of Cantius trigonodus (University of Michigan Museum of Paleontology catalog number UMMP 87973) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Notharctidae, UMMP, University of Michigan Museum of Paleontology, Eocene, and a537f0d8-6185-9562-9b9a-a233468bf8e1
- Discipline:
- Science
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- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for L cuboid of Cantius mckennai (University of Michigan Museum of Paleontology catalog number UMMP 81824) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Notharctidae, UMMP, University of Michigan Museum of Paleontology, Eocene, and e763ae30-4a86-9d02-0b8a-9297ff48cf58
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for navicular of Cantius trigonodus (University of Michigan Museum of Paleontology catalog number UMMP 73318) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Notharctidae, Eocene, and 0d607d85-8d27-6be2-dbc5-9cb73f1324ae
- Discipline:
- Science
-
- Creator:
- Hepner, Shadrach, T
- Description:
- This data provided evidence of the presence of a lower hybrid drift instability in a magnetic nozzle. It was used in DOI: 10.1063/5.0012668 to estimate the effective electron collision frequency that it induced in the context of cross-field electron transport. It is also used to determine the effective reduction in heat flux resulting from propagation along magnetic field lines in an upcoming work.
- Keyword:
- Magnetic nozzle, heat flux, plasma instabilities
- Citation to related publication:
- Hepner, S., Jorns, B. (2020). Wave-driven non-classical electron transport in a low temperature magnetically expanding plasma. Appl. Phys. Lett, 116(263502). https://doi.org/10.1063/5.0012668
- Discipline:
- Engineering
-
- Creator:
- Zhang, Yingxiao MI and Steiner, Allison MI
- Description:
- Atmospheric aerosols are emitted from both natural and anthropogenic sources, and they play an important role in climate, impacting solar radiation and cloud formation. Compared to other types of aerosol particles, primary biological aerosol particles (PBAP, e.g., fungal spores, bacteria, pollen, virus, etc.) are relatively understudied. However, they are linked to adverse health effects and have the potential to influence ice nucleation at higher temperatures. Anemophilous (or wind-driven) pollen is one of the important PBAP, impacts cloud properties under some conditions, and triggers allergic diseases such as allergic rhinitis (also known as hay fever) and asthma. Because pollen emission is closely associated with environmental drivers, the climatic change could influence pollen emission and consequently the incidence of allergic disease. Using CMIP6 model data, our research projects continental-scale changes in pollen emissions at the end of the century, considering the effects of temperature, precipitation, CO2, and future vegetation distribution change. While prior studies have evaluated single types of pollen, we use a mechanistic model to comprehensively simulate total pollen across the United States from all sources. Similar to previous single-source pollen studies, our simulations suggest that pollen season duration will lengthen, and pollen emission will increase in the future, but in addition, we identify new synergies between different pollen types that can influence the maximum daily pollen. Our work highlights that the changes of overlap between pollen seasons of different vegetation taxa can magnify or mitigate the impacts of climate change, which addresses the importance to study all pollen emissions comprehensively. Given pollen is one of the most common triggers of seasonal allergies, our findings also provide information to evaluate global health conditions in the future. In this study, all of the pollen emission data are written in NetCDF files.
- Keyword:
- Pollen emission change, Climate change, Public health, Vegetation land cover change, and CO2 effects
- Citation to related publication:
- Zhang, Y. and Steiner, A. “Projected climate-driven changes in pollen emission season length and magnitude over the continental United States”, under review in Nature Communication, 2022. and yingxz. (2022). steiner-lab/pecm: PECM2.0 (2.0). Zenodo. https://doi.org/10.5281/zenodo.5874177
- Discipline:
- Science
-
- Creator:
- Vani Archaeological Survey
- Description:
- In 2009, an American-Georgian team of four archaeologists, four archaeology students, and a geophysicist carried out a four-week season of “extensive” survey of known archaeological sites, together with geophysical prospection at selected locations. In a second four-week season in 2010, with the additions of a geologist and an archaeobotanist, we continued our program of documentation of known sites and of exploratory geophysical prospection, and we also carried out limited test excavations at a number of sites. We returned for a shorter (one- to two-week) study seasons in 2011 and 2014, focusing on museum and archival research in Vani, Kutaisi, and Tbilisi., The area covered by our survey extends 15 km both east and west of Vani, and as far as 10 km south of Vani, from the Phasis River plain at approximately 50 m above sea level to the lower slopes of the lesser Caucasus, at approximately 1000 m above sea level. The purpose of the program was to visit all the previously identified archaeological sites in the region, and to integrate existing knowledge into a database of sites and a Geographical Information System. Each entry into this database is recorded as a dataset in this deposit. Entries recorded in 2009 are prefaced with the letter “A,” those recorded in 2010 are prefaced with the letter “B.” A single entry added in 2011 received the preface, “C.” In carrying out the survey, we depended heavily on the unpublished dissertation by Sulkhan Kharabadze, “Vanis Qveq’nis” Arqeologiuri Ruk’a (dzv.ts. VIII – akh.ts. III ss.) – Archaeological Map of the Territory of Vani (8th Century BC – 3rd Century AD) (Ph.D. dissertation: Georgian Technical University 2008). A map showing the locations of all the sites recorded by the survey is attached to this dataset., Our procedure for each site visit was as follows: we drove to the nearest village and searched out a local guide who could take us to the place we wished to see. We drove as far as we could to each site, then got out and walked, using GPS-equipped field computers (Trimble Geo-XM) to make a continuous record of our path. We recorded the lay of the land and any artifacts we saw en route (pottery sherds, traces of burnt daub, lithics and stone objects, architectural features in situ). We designated as points of interest any significant archaeological remains (concentrations of pottery, in situ features, notable stray finds, etc.), and every place we could identify where earlier discoveries had been made or archaeological excavations carried out. For every point of interest, we recorded the latitude, longitude, and elevation; took a series of digital photographs; and made a grab bag collection of pottery and other finds if possible. Where appropriate, we took basic measurements of architectural features (e.g., of Mediaeval towers). We also kept records of local place names, the names of our local guides, and any miscellaneous information they gave us. , Certain sites were selected for further investigation. These included Saqanchia A001, where we carried our geophysical survey and limited excavation; Shuamta, Melashvilebisgora A033, where we also carried out geophysical survey and limited excavation; Kveda Bzvani A047, where we carried out controlled collection of surface finds; and Zeda Bzvani, Meskhebisgora, A053, where we also carried out controlled collection of surface finds., The datasets recorded in this deposit include basic descriptions of each site, citations to previous publications, and links to relevant maps, photographs, and drawings. Where they exist, maps for individual datasets are labeled according to the name and number of the site, e.g., DapnariA002Map.jpg. The labels for photographs taken during the field season record their numbers in the sequence of photographs taken that season, e.g., Vani09.0047.jpg. A complete list of all photographs recorded in this way is available for download. Photographs and drawings of artifacts from individual sites made after the season are labeled with the names of the sites followed by the numbers assigned to the objects, with photographs saved as jpeg files, and drawings saved as tiff files; thus KvedaBzvani11-14.jpg is a photograph of objects 11-14 from the site of KvedaBzvani, while KvedaBzvani11-14.tif is a set of drawings of the same objects. Finally, drawings of sites where excavations were carried out are labeled with the name of the site, the number of the trench (if applicable), and the type of drawing, so that Shuamta2010.1Plan is a plan of Trench 2010.1 at Shuamta., and In addition, the collections in this deposit group datasets together according to important characteristics such as period (Bronze Age, Iron Age, etc.) or type (settlement, fortification, burial, and so on).
- Citation to related publication:
- Kharabadze, S.(2008). “Vanis Qveq’nis” Arqeologiuri Ruk’a (dzv.ts. VIII – akh.ts. III ss.) – Archaeological Map of the Territory of Vani (8th Century BC – 3rd Century AD). (Ph.D. dissertation).Georgian Technical University.
- Discipline:
- Social Sciences and Humanities
-
- Creator:
- Galaty, Michael L. and Bejko, Lorenc
- Description:
- This work contains documentation for the entire Projekti Arkeologjik i Shkodrës (PASH) data set, which has been organized into a series of collections and works in the Deep Blue Data repository to facilitate access and navigation. The data presented here accompany a two-volume research report, published by the University of Michigan Museum of Anthropological Archaeology Press (Galaty and Bejko 2023--see below).
- Keyword:
- archaeology
- Citation to related publication:
- Galaty, M. L., & Bejko, L. (Eds.). (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 1). University of Michigan Press. https://doi.org/10.3998/mpub.12201317 and Galaty, M. L., & Bejko, L. (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 2). University of Michigan Press. https://doi.org/10.3998/mpub.12208577
- Discipline:
- Humanities
-
- Creator:
- Bradshaw, Lisa, Vernon, Julianne, Schmidt, Thomas, James, Timothy, Zhang, Jianzhi, Archbold, Hilary, Cadigan, Ken, Wolfe, John P., and Goldberg, Deborah E.
- Description:
- This is the experimental data referenced in our manuscript entitled "Influence of CUREs on STEM retention depends on demographic identities." The dataset comprises csv files with results from student surveys given to students enrolled in Biology 173 from Fall 2015 through Fall 2019 as well as institutional data of their course grades and cumulative GPA at the time they enrolled in Biology 173, and graduation and major data for student who had graduated by 2021. The survey questions used in the analysis and the IRB consent form are also included as pdfs.
- Keyword:
- undergraduate research, STEM retention, CURE, introductory biology laboratory, and education research
- Citation to related publication:
- Bradshaw, L., Vernon J., Schmidt T., James T., Zhang J., Archbold H., Cadigan K., Wolfe J.P. & Goldberg D. 2023. Research article: Influence of CUREs on STEM retention depends on demographic identities. J Microbiol Biol Educ (accepted)
- Discipline:
- Science
-
- Creator:
- Salaree, Amir, Spica, Zack, and Huang, Yihe
- Description:
- The items in this bundle are supporting videos to a study of subsea seismo-acoustics carried out regarding an earthquake in the Persian Gulf. The main data used in the study is a diver's recording of the acoustic waves from the earthquake. The epicenter and topography data used in this study are publicly available as cited in the README.txt file.
- Keyword:
- Seismo-acoustics, Persian Gulf, Divers’ Microphones, Seismic Hazard, Early Warning
- Discipline:
- Science