This dataset was generated for our work: "Complex motion of steerable vesicular robots filled with active colloidal rods". In this project, we used Brownian molecular dynamics simulations to study the rich dynamical behavior of rigid kinked vesicles that contain self-propelling rod-shaped particles. We identified that kinks in the vesicle membrane bias the emergent clustering and alignment of the active agents. Based on the system's geometrical and material properties, we were able to design multiple types of directed motion of the vesicle superstructure. This dataset includes simulation data for two-dimensional systems of self-propelling rod particles confined by teardrop-shaped coarse-grained vesicles. The trajectory of each simulation is saved in a GSD format file with parameter metadata in a JSON file. Due to the large number of replicas of each pair of parameters, simulation data were grouped into 5 different folders. Collective quantitative analysis for simulated trajectories was performed with Jupyter Notebook. and Workspaces_simulations.zip contains all the workspaces of simulations Each folder has subfolders called 'dimer' and 'trimer' depending on the length of the propelling rod particles used in the simulation. (Except for the folder 'number-density_16' which has only 'dimer') In the subfolders, we include the Python scripts used in this work for simulating and trajectory analysis for individual trajectory data. The parameter space of each folder is noted in init.py.
Analysis_jupyter_notebooks.zip includes Jupyter notebooks that can reproduce the collective analysis done for this work.
Therapeutic mechanisms of human neural stem cells (hNSCs) were studied in an Alzheimer's disease mouse model (5XFAD). hNSCs restored spatial memory abilities in 5XFAD animals; however, amyloid beta levels were unchanged. Spatial transcriptomics was used to probe mechanisms of hNSCs. Focusing on a subset of plaque-induced genes, gene normalization was seen particularly in microglia, confirmed by PROGENy and Cell Chat analyses. and The spatial transcriptomics data from this publication have been deposited in NCBI Gene Expression Omnibus (16) and are accessible through GEO Series accession number GSE209583 ( https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209583 and enter token gzglogqkvjqrhmt). Additional supporting data are available from the corresponding author upon reasonable request.
Citation to related publication:
Chen KS, Noureldein MH, McGinley LM, Hayes JM, Rigan DM, Kwentus JF, Mason SN, Mendelson FE, Savelieffd MG, Feldman EL. Human neural stem cells restore spatial memory in a transgenic Alzheimer's disease mouse model by an immunomodulating mechanism. bioRxiv [Preprint]. 2023 Nov 4:2023.11.01.565161. doi: 10.1101/2023.11.01.565161. PMID: 37961246; PMCID: PMC10635057.
Rotating Magnetic Field (RMF) thrusters are a form of electrodeless plasma propulsion. This technology is a low maturity but potentially enabling candidate for high-power in-space propulsion for use with alternative propellants.
The purpose of the data here, and the associated publication is to evaluate the phenomenological efficiency modes for this thruster test article to explain and understand its overall efficiency.
These modes include divergence, power coupling, mass utilization, and plasma/acceleration efficiency.
Additional time-resolved measurements of the internal plasma properties were performed using a triple Langmuir probe to evaluate energy loss processes within the thruster.
Gill, T.M., Sercel, C.L., and Jorns, B.A., "Experimental Investigation into Efficiency Loss in Rotating Magnetic Field Thrusters", Plasma Sci. Sources and Tech. 2023 (In Review)
The research involved vortex-panel simulations of fluid-structure interactions. A file Captions_for_SpanwiseVariationsMovies.pdf is included that describes the movies.
Reconstructed CT slices for Incisor frag. of Plesiadapis gingerichi (University of Michigan Museum of Paleontology catalog number UMMP 68409) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
Reconstructed CT slices for Right M3/ of Plesiadapis gingerichi (University of Michigan Museum of Paleontology catalog number UMMP 68409) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
Reconstructed CT slices for Right M2/ of Plesiadapis gingerichi (University of Michigan Museum of Paleontology catalog number UMMP 68409) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
Reconstructed CT slices for Right maxilla with M1/ and roots of P4/ of Plesiadapis gingerichi (University of Michigan Museum of Paleontology catalog number UMMP 68409) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
The H2O concentration and H2O/Ce ratio in olivine-hosted melt inclusions are high (H2O up to 1410 ppm; H2O/Ce up to 77) in lunar sample 74220 but lower (H2O up to 430 ppm; H2O/Ce up to 9.4) in all other lunar samples studied before this work. This difference is absent for other volatiles (F, S, and Cl) in melt inclusions in 74220 and other lunar samples. Because H2O (or H) is a critical volatile component with significant ramifications on the origin and evolution of the Moon, it is important to understand what causes such a large gap in H2O/Ce ratio between 74220 and other lunar samples. Two explanations have been advanced. One is that volcanic product in sample 74220 has the highest cooling rate and thus best preserved H2O in melt inclusions compared to melt inclusions in other samples. The other explanation is that sample 74220 is a localized heterogeneity enriched in some volatiles. To distinguish the two possibilities, here we present new data from three rapidly cooled lunar samples: olivine-hosted glassy melt inclusions (OHMIs) in 74220 regolith and 79135 regolith breccia, and pyroxene-hosted glassy melt inclusions (PHMIs) in 15597 pigeonite basalts. If the gap is due to the difference in cooling rates, samples with cooling rates between 74220 and other studied lunar samples should have preserved intermediate H2O concentrations and H2O/Ce ratios. Our results show that melt inclusions in 79135 and 15597 contain high H2O concentrations (up to 969 ppm in 79135 and up to 793 ppm in 15597) and high H2O/Ce ratios (up to 21 in 79135 and up to 13 in 15997). Combined with literature data, we confirm that H2O/Ce ratios of different lunar samples are positively correlated to the cooling rates and independent of the type of mare basalts. Our work bridges the big gap in H2O/Ce ratio among 74220 and other lunar samples. We hence reinforce the interpretation that the lunar sample with the highest cooling rate best represents pre-eruptive volatiles in lunar basalts due to the least degassing. H2O, F, P, S and Cl concentrations in the lunar primitive mantle are also estimated in this work. and *** 2024-03-19: In addition to the files in the previous version, this updated deposit contains more data files as the supplementary files of the paper. For example, we added a summary excel file containing data that are used for figures in the paper, and an excel file contains data in the tables of the paper for easy use by readers. See ReadMe.txt for changes.
Reconstructed CT slices for Left dentary with P/4-M/1, M/2 trigonid, P/3 roots of Plesiadapis gingerichi (University of Michigan Museum of Paleontology catalog number UMMP 68409) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.