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- Creator:
- Gerber, Elisabeth R., Morenoff, Jeffrey D., Ostfeld, Mara C., Sand, Sharon L., and Fan, Yucheng
- Description:
- Survey topics included: Household Composition, Residence and Housing Status; Health, Social Determinants of Health, Long COVID, Mental Health; Disability; Perceptions of Neighborhood; Transportation mode; Financial Precarity; Perception of Control; Voting; Employment; Demographics. This data file contains 704 Flint residents' close-ended responses. The full dataset will be published on ICPSR.
- Keyword:
- Flint, MI, Household composition, Housing status, Health, Long COVID symptom , Mental health, Disability, Perceptions of neighborhood, Transportation mode, Perceptions of control, Voting, Financial precarity, Employment, and Demographics
- Discipline:
- Social Sciences and News and Current Events
-
- Creator:
- Gerber, Elisabeth R., Morenoff, Jeffrey D., Ostfeld, Mara C., Sand, Sharon L., and Fan, Yucheng
- Description:
- Survey topics included: Household Composition, Residence and Housing Status; Perceptions of Neighborhood; Neighborhood Blight; Social Connection, Social Isolation, Loneliness; Election; Employment; Crime, Violence, Safety & Violence Reduction Programs; Municipal Services and Democratic Values. This data file contains 2,450 Detroit residents' close-ended responses. The full dataset will be published on ICPSR.
- Keyword:
- Detroit, Employment, Neighborhood, Blight, Social cohesion, Election, Crime, Violence, Violence reduction program, Municipal service, Demographics, Voting, and Social connection
- Discipline:
- Social Sciences and News and Current Events
-
- Creator:
- Giri, Bapun, Kinsky, Nathaniel, and Diba, Kamran
- Description:
- The research that produced this data tested how sleep loss impacted the phenomena of reactivation and replay, which occurs when recently-learned information is reactivated/replayed during post-learning sleep/rest.
- Keyword:
- Hippocampus, Memory, Sleep, Sleep Deprivation, and Electrophysiology
- Citation to related publication:
- Giri, B., Kinsky, N.R., Kaya, U., Maboudi, K., Abel, T., Diba, K. (2024). Sleep loss diminishes hippocampal reactivation and replay. Nature, (2024). https://doi.org/10.1038/s41586-024-07538-2
- Discipline:
- Science
-
- Creator:
- King, Fraser and Pettersen, Claire
- Description:
- Microphysical observations of precipitating particles are crucial for numerical weather prediction models and remote sensing retrieval algorithms. This dataset provides a unified, comprehensive collection of particle microphysical observations from the Precipitation Imaging Package (PIP) over the Northern Hemisphere. Data spans from 2014-2023 across 10 measurement sites and encompasses over 775 thousand precipitating minutes. Within this dataset, users will find a range of microphysical attributes for rain and snow, along with higher-order products.
- Keyword:
- precipitation, imaging, package, PIP, snowfall, rainfall, disdrometer, particle, microphysics
- Citation to related publication:
- King, F., Pettersen, C., Bliven, L. F., Cerrai, D., Chibisov, A., Cooper, S. J., et al. (2024). A comprehensive Northern Hemisphere particle microphysics data set from the precipitation imaging package. Earth and Space Science, 11, e2024EA003538. https://doi.org/10.1029/2024EA003538
- Discipline:
- Other
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Please see https://deepblue.lib.umich.edu/data/collections/gx41mj91r?locale=en for these data. Data consist of two batch scans (one batch of three scans followed by one batch of two scans, totaling five CT scans) containing slabs from the Marshall Sandstone; and edited data corresponding to figured specimens (UMMP VP 119343, 119345, 119346, and 118281). Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin. Cropped and adjusted volumes are included for figured specimens UMMP VP 118281, 119343, 119345, and 119346 as-is, with scan parameter notes in respective zip folders. Data include: UMMP VP 119342, 119343, 119344, 119345, 119346, 119347, 119348, 119349, 119350, 119351, 119501 corresponding with the following UUIDs: 882a6fa3-b7cc-62fa-e117-694b0d14dde1 fc227a73-300f-af25-aba8-5360f843aa14 57af0b20-3e98-3bd9-3560-e16ac8a528ac 0c936931-8cb0-57e7-5847-fa37c2066d72 c6f93408-47d1-6238-c093-902b976d021b 95f8fc96-7331-4142-b6a2-09339e8a4d15 e520d6c4-1de1-999e-7a02-c55056c76d33 74d33ea5-f147-13c2-3e44-6968df7ac7bf 82ca3e68-d05a-971d-5704-293d4601b62e afb2c66a-5b73-a99b-1dac-8f8efe29d90a 4b5ba3c4-99ba-cd2c-d2e6-6d6f5501a526
- Keyword:
- Paleontology, Fossil, CT, Vertebrate, Actinopterygii, Sarcopterygii, Chondrichthyes, UMMP, University of Michigan Museum of Paleontology, Carboniferous, Marshall Sandstone, Mississippian, CTEES, and 119342 119343 119344 119345 119346 119347 119348 119349 119350 119351 119501 882a6fa3-b7cc-62fa-e117-694b0d14dde1 fc227a73-300f-af25-aba8-5360f843aa14 57af0b20-3e98-3bd9-3560-e16ac8a528ac 0c936931-8cb0-57e7-5847-fa37c2066d72 c6f93408-47d1-6238-c093-902b976d021b 95f8fc96-7331-4142-b6a2-09339e8a4d15 e520d6c4-1de1-999e-7a02-c55056c76d33 74d33ea5-f147-13c2-3e44-6968df7ac7bf 82ca3e68-d05a-971d-5704-293d4601b62e afb2c66a-5b73-a99b-1dac-8f8efe29d90a 4b5ba3c4-99ba-cd2c-d2e6-6d6f5501a526
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- Rager, Theresa, Mmeje, Okeoma, and Parker, Jayelin
- Description:
- Our final sample included 445 participants. Most identified as White (65.0%), non-Hispanic (82.8%), and heterosexual (60.0%). The study revealed disparities in comfort levels regarding receiving home-based STI-test kits at home and other household members seeing them; responses varied by education level, gender identity, and U.S. region. Individuals with less than a high school education were less likely to feel comfortable self-collecting for STI testing.
- Keyword:
- sexually transmitted infection
- Citation to related publication:
- Parker JN, Rager TL, Burns J, Mmeje O. Data Verification and Respondent Validity for an Internet-Based Sexual Health Survey: Tutorial. JMIR Form Res. 2024;8. doi:10.2196/56788
- Discipline:
- Health Sciences
-
- Creator:
- Ludlow, Andrew
- Description:
- Single molecule long read RNA/cDNA sequencing of TERT revealed 45 TERT mRNA variants including 13 known and 32 novel variants. Among the variants, TERT Delta 2-4, which lacks exons 2-4 but retains the original open reading frame, was selected for further study. Induced pluripotent stem cells and cancer cells express higher levels of TERT Delta 2-4 compared to primary human bronchial epithelial cells. Overexpression of TERT Delta 2-4 enhanced clonogenicity and resistance to cisplatin-induced apoptosis. Knockdown of endogenous TERT Delta 2-4 in Calu-6 cells reduced clonogenicity and resistance to cisplatin. Our results suggest that TERT Delta 2-4 enhances cancer cells’ resistance to intrinsic apoptosis. RNA sequencing following knockdown of Delta 2-4 TERT indicates that translation is downregulated and that mitochondrial related proteins are upregulated compared to controls.
- Keyword:
- TERT, Alternative splicing, Telomere, and Telomerase
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology, Vertebrate, Paleonisciform, Actinopterygii, Sarcopterygii, Chondrichthyes, Marshall Sandstone , Mississippian, and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Vertebrate, Actinopterygii, Sarcopterygii, Paleonisciform, Carboniferous, Chondrichthyes, UMMP, University of Michigan Museum of Paleontology, Marshall Sandstone, Mississippian, and CTEES
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Vertebrate, Actinopterygii, Sarcopterygii, Paleonisciform, Carboniferous, Chondrichthyes, UMMP, University of Michigan Museum of Paleontology, Marshall Sandstone, Mississippian, and CTEES
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology , Vertebrate, Paleonisciform, Actinopterygii, Sarcopterygii, Chondrichthyes, Marshall Sandstone , Mississippian , and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119342etseq) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology, Vertebrate, Paleonisciform, Actinopterygii, Sarcopterygii, Chondrichthyes, Marshall Sandstone , Mississippian, and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Spine of Stethacanthus (University of Michigan Museum of Paleontology catalog number UMMP VP 118281) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology , Vertebrate, Chondrichthyes, Marshall Sandstone, Mississippian, and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119343) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology, Vertebrate, Chondrichthyes, Marshall Sandstone, Mississippian, and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119346) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology, Vertebrate, Chondrichthyes, Marshall Sandstone, Mississippian , and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Slabs of Vertebrate (University of Michigan Museum of Paleontology catalog number UMMP VP 119345) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, CTEES, UMMP, University of Michigan Museum of Paleontology , Vertebrate, Chondrichthyes, Marshall Sandstone, Mississippian, and Carboniferous
- Citation to related publication:
- JAMES V. ANDREWS, ETHAN A. SHIRLEY, AND RODRIGO T. FIGUEROA. VERTEBRATES OF THE BLUE RIDGE ESKER (MISSISSIPPIAN, MARSHALL SANDSTONE) OF MICHIGAN. Contributions from the Museum of Paleontology, University of Michigan, Vol. 36, no. 3, pp. 1–16, 2024
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for jaw of Palaeoniscid (New Mexico Museum of Natural History catalog number NMMNH P-80347) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Fossil, CT, Actinopterygii, NMMNH, New Mexico Museum of Natural History and Science, New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- Friedman, Matt and Giles, Sam
- Description:
- These files contain tomographic data, segmentation masks (both contained in .mcs file), and surface meshes (in .ply format) Carboniferous fish Daemondontiscus harrisae. They were used as part for the formal description of this taxon. The .mcs file can only be opened in the proprietary software Materialise Mimics; meshes can be opened in several programs (e.g., MeshLab; https://www.meshlab.net/).
- Keyword:
- CT, Actinopterygii, NMMNH, New Mexico Museum of Natural History and Science, New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for Teeth of Palaeoniscid (New Mexico Museum of Natural History catalog number NMMNH P-77557) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Fossil, CT, Actinopterygii, NMMNH, New Mexico Museum of Natural History and Science, New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for Cranium of Palaeoniscid (New Mexico Museum of Natural History catalog number NMMNH P-77557) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Actinopterygii, NMMNH, New Mexico Museum of Natural History and Science , New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- Friedman, Matt and Giles, Sam
- Description:
- These files contain tomographic data, segmentation masks (both contained in .mcs file), and surface meshes (in .ply format) Carboniferous fish Daemondontiscus harrisae. They were used as part for the formal description of this taxon. The .mcs file can only be opened in the proprietary software Materialise Mimics; meshes can be opened in several programs (e.g., MeshLab; https://www.meshlab.net/).
- Keyword:
- CT, Actinopterygii, NMMNH, New Mexico Museum of Natural History and Science, New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- Friedman, Matt and Giles, Sam
- Description:
- These files contain tomographic data, segmentation masks (both contained in .mcs file), and surface meshes (in .ply format) for the Carboniferous fish fossil NMMNH P-80347 type 5 palaeonisciform/“elonichthyid” indeterminate 1. The .mcs file can only be opened in the proprietary software Materialise Mimics; meshes can be opened in several programs (e.g., MeshLab; https://www.meshlab.net/).
- Keyword:
- Fossil, CT, Actinoptergyii, NMMNH, New Mexico Museum of Natural History and Science, New Mexico, and Carboniferous
- Discipline:
- Science
-
- Creator:
- Figueroa, Rodrigo and Giles, Sam
- Description:
- These files (.ply format) are surface meshes for the mandible and parasphenoid of the Permian fish Brazilichthys macrognathus. They were used to make comparisons with other Paleozoic fishes. These meshes can be opened in several programs (e.g., MeshLab; https://www.meshlab.net/).
- Keyword:
- Fossil, CT, Actinopterygii, Museu de Ciências da Terra, Centro de Pesquisas de Recursos Minerais, Brazil, and Permian
- Discipline:
- Science
-
- Creator:
- Moenter, Suzanne, Jaime, Jennifer, and DeFazio, Anthony
- Description:
- Voltage-clamp recording .dat files from PatchMaster, IgorPro, Prism and Excel files.
- Keyword:
- GnRH, voltage-clamp, prenatal androgen, puberty, and PCOS
- Citation to related publication:
- Development and prenatal exposure to androgens alter potassium currents in gonadotropin-releasing hormone neurons from female mice. Jaime J, DeFazio RA, Moenter SM. J Neuroendocrinol. 2024 Mar;36(3):e13373. doi: 10.1111/jne.13373
- Discipline:
- Science
-
- Creator:
- Lehman, John T
- Description:
- The information reported in this dataset was obtained through research grants from the Michigan Sea Grant Program. The research was undertaken to study trace metal limitation of algal growth in Saginaw Bay, Lake Huron from 1999 to 2003.
- Keyword:
- algae, nutrients, trace metals, and Great Lakes
- Citation to related publication:
- Bazzi, A., Lehman, J.T., Nriagu, J.O., Hollandsworth, D., Irish, N. and Nosher. T. 2002. Chemical speciation of dissolved copper in Saginaw Bay, Lake Huron with Square Wave Anodic Stripping Voltammetry. Journal of Great Lakes Research 28: 466-478. and Lehman, J.T., Bazzi, A., Nosher, T. and Nriagu J.O. 2004. Copper inhibition of algal growth in Saginaw Bay – Lake Huron. Canadian Journal of Fisheries and Aquatic Sciences 61: 1871-1880.
- Discipline:
- Science
-
- Creator:
- Chen, Hongfan, Sachdeva, Nishtha, Huang, Zhenguang, van der Holst, Bart, Manchester, Ward, Jivani, Aniket, Zou, Shasha, Chen, Yang, Huan, Xun, and Toth, Gabor
- Description:
- In this study, we show that coronal mass ejection (CME) simulations conducted with the Space Weather Modeling Framework (SWMF) can be assimilated with SOHO LASCO white-light (WL) coronagraph observations and solar wind observations at L1 prior to the CME eruption to improve the prediction of CME arrival time. L1 observations are used to constrain the background solar wind, while LASCO coronagraph observations filter the initial ensemble simulations by constraining the simulated CME propagation speed. We then construct probabilistic predictions for CME arrival time using the data-assimilated ensemble. Scripts in this work are written in R, Python and Julia.
- Keyword:
- Data Assimilation, Uncertainty Quantification, and Space Weather
- Discipline:
- Engineering
-
- Creator:
- Moenter, Suzanne, Jaime, Jennifer, and DeFazio, Anthony
- Description:
- Current-clamp recording .dat files from PatchMaster, Igor and Prism and Excel analyses.
- Keyword:
- GnRH, current-clamp, and prenatal androgen exposure
- Citation to related publication:
- GnRH Neuron Excitability and Action Potential Properties Change with Development But Are Not Affected by Prenatal Androgen Exposure. Jennifer Jaime, Suzanne M. Moenter eNeuro 29 November 2022, 9 (6) ENEURO.0362-22.2022; DOI: 10.1523/ENEURO.0362-22.2022
- Discipline:
- Science
-
- Creator:
- Sulkowski, Brendan and Collette, Matthew
- Description:
- This data set supports the published four-component integration problem using real-world weather forecasts from the European Centre for Medium-Range Weather Forecast and a simulated linear spring--mass--damper system excited by wave elevation. Each component in the spring--mass--damper system is monitored with techniques of differing accuracies representative of marine-type health uncertainties. Weather forecast uncertainty is included using weather predictions of significant wave height and peak period up to 10 days out. As well as their exact values, different test cases include the spring, mass, and damper being modeled as noisy sensors representative of sensors onboard a vessel, as well as the spring being modeled as a visually-inspected system component reflective of human impact onboard a vessel. Complete details are given in the referenced paper; this data set represents the inputs to the machine learning classifiers discussed.
- Keyword:
- Machine Learning, Inspection, Marine system, and Weather forecast
- Citation to related publication:
- Sulkowski, B and M. Collette. (2025) A comparison of machine learning classifiers in predicting safety for a multi-component dynamic system representation of an autonomous vessel. Applied Ocean Research, 154 (104368), https://doi.org/10.1016/j.apor.2024.104368
- Discipline:
- Engineering
-
- Creator:
- Arvan, Peter
- Description:
- Beta cells with knockdown (or KO) of Sec61A2. Mouse, rat, human cell types. Also knockdown in mouse islets or dispersed mouse islet cells. Most experiments analyzed by Western blotting of proinsulin (and other).
- Keyword:
- Sec61A2
- Citation to related publication:
- Xiaoxi Xu, Thomas W. Bell, Truc Le, Ivy Zhao, Emily Walker, Yiqing Wang, Ning Xu, Scott A. Soleimanpour, Holger A. Russ, Ling Qi, Billy Tsai, Ming Liu*, Peter Arvan*: Role of Sec61α2 translocon in insulin biosynthesis. Diabetes, 2024 Sep 26:db240115. Online ahead of print.
- Discipline:
- Health Sciences
-
- Creator:
- Lehman, John T; Horst, Geoffrey; Applewhite, Derek
- Description:
- Data were collected to test theories advanced during a Contested Case Hearing to expand treatment capacity of the City of Brighton wastewater treatment facility. The lake historically developed nuisance blooms of cyanobacteria associated with excessive phosphorus and nitrogen limitation. The new wastewater treatment facility reduced phosphate discharge and provided increased concentrations of nitrate. A case study narrative describes the scientific and legal aspects of the case. Data collection and analysis pointed to the presence of a cryptic source of phosphorus income other than from the influent streams, possibly from undocumented septic waste discharges.
- Keyword:
- Eutrophication, Limnology, and Nuisance Algae
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Management Proposals Cards contain information for a lake and proposals for management strategies. Information includes present designation and change in designation, present game species, stocking suggestions, predator control, food increase suggestions, vegetation, shelters, spawning facilities, water level regulation, and other recommendations.
- Keyword:
- lake, fish, stocking, vegetation, predator control, shelter, spawning, water level, and management
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Management Record Fish Planting cards show the species and number of fish planted (stocked) each year in a lake.
- Keyword:
- Lake, stocking, fish, and planting
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Management Record cards show recommendations of management actions for each lake and then the record of actual management practices and results. Each action includes a date. Examples of management recommendations and actions include stocking, habitat management, regulation, and eradication.
- Keyword:
- Lake, management, eradication, stocking, fish, habitat, and regulation
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Bottom Food Summary Cards report the samples from the bottom of the lake taken to look for possible food sources for fishes. This information includes the station number, area sampled, depth sampled, bottom substrate type, vegetation, and the organisms per sample. Organisms include round worms, flat worms, gastropods, molluscs, amphipods, water mites, and macroinvertebrates.
- Keyword:
- Lake, substrate, vegetation, macroinvertebrates, molluscs, mites, worms, gastropods, and amphipods
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Evaluation Report Chemical Rehabilitation cards detail the percent of each fish species in the community after a chemical treatment. The card also notes possible detrimental effects, beneficial effects, and suggested improvements for the project. These cards complement the CJUS and CTRE cards.
- Keyword:
- Lake, fish, management, and chemical treatment
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Justification Report Chemical Rehabilitation cards detail initial lake survey information and recommendations for potential removal of fish populations using chemical treatments in order to stock with desired fishes. The lake survey includes the percent of each species from the total community caught, temperature and oxygen profile data, bottom substrate information, alkalinity, Secchi disk depth, and water color. A summary of the findings and recommendations for the lake are on the back of the card. These card complement the CEVA and CTRE cards.
- Keyword:
- Lake, management, fish, chemical treatment, oxygen, temperature, Secchi depth, water color, and alkalinity
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Limnology is the study of lakes and bodies of freshwater. These cards include tabulated data of temperature and oxygen profiles, the temperature and oxygen concentrations at different depths.
- Keyword:
- Lake, oxygen, temperature, profile data, and depth
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Examination cards are similar to lake summary cards, but have less information. They include connectivity, water color, vegetation, food sources, bottom substrate, shore condition, temperature, area, and fish species observations.
- Keyword:
- lake, fish, vegetation, substrate, water color, lake area, temperature, and shoreline
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card., Length/Weight Regression cards show the length-weight regression for specific fish species. The fish species, number measures, and length range is captured for each species. For a given length, weight is calculated from the regression and compared to a reference weight such as a state average weight., and The coefficients for Michigan fishes can be found here: Schneider, James C., P. W. Laarman, and H. Gowing. 2000. Length-weight relationships. Chapter 17 in Schneider, James C. (ed.) 2000. Manual of fisheries survey methods II: with periodic updates. Michigan Department of Natural Resources, Fisheries Special Report 25, Ann Arbor.
- Keyword:
- Lake, fish, length, and weight
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Lake Rehabilitation Report cards detail information on the dead fish recovered after chemical rehabilitation. This information includes the objective and summary of the treatment as well as the species recovered and their number, weight, and length.
- Keyword:
- Lake, fish, management, and chemical treatment
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Fish Mortality cards detail information on reported or observed fish mortality events. Information was recorded on the extent of mortality, cause of mortality, and other details regarding the species and number of kills observed.
- Keyword:
- Lake, fish, winter-kill, summer-kill, and mortality
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Parasite Record cards include information on the species captured and parasites found on them. These cards also include detailed information on the location of the parasite, for example, the skin, fins, gills, stomach, or other organs.
- Keyword:
- Lake, fish, parasite, cysts, and tapeworms
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card.
- Keyword:
- Lake, fish, seine, hauls, and length
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Fish Collection and Age-Growth Summary cards contain tabulated information on species captured and number of species in each length class. Information on gear type is also included. These summary card often complement the GROW cards.
- Keyword:
- Lake, fish, growth, length, weight, gear, seine, and nets
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Fish Collection Summary cards contain tabulated information on the location and gears used for a lake survey at different stations around the lake. These summary cards often complement the FISHc cards.
- Keyword:
- Lake, gear, survey, fish, location, and station
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Lake Mapping Record Cards contain drawings of lakes with depth contours (bathymetry), as well as other features like bottom substrate, vegetation, and shore features.
- Keyword:
- Lake, bathymetry, depth, map, substrate, vegetation, and shore features
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys for Water Analysis (WATR). Images include the front of the card and when available, the back of a card. and Water analysis cards include information on water profile data. Profile data are the depth and corresponding temperature, oxygen content, and alkalinity.
- Keyword:
- lake profiles, depth, oxygen, temperature, and alkalinity
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Hernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Lake volume analysis cards describe the acreage of different parts of the lake as well as the acre feet at different depth contours. Information also includes the location, surface elevation, area of the lake, date, and name of investigator.
- Keyword:
- lake, area, elevation, and depth
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Hernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Aquatic vegetation analysis cards contain information about the depth and types of aquatic vegetation observed by an investigator. They also include basic information about the location, date, and collector name.
- Keyword:
- lake and vegetation
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Teague, Seth, Yu, Zhiyuan, and Heemskerk, Idse
- Description:
- Images were collected as part of a project investigating the interpretation of BMP signaling dynamics by differentiating human pluripotent stem cells. Image files are in the proprietary Imaris (.ims) file format. MATLAB and Python code for image processing and quantification is provided with the data and at https://github.com/seth414/HeemskerkLabMethods. Processed data originally published in Teague et al., 2024 (see below).
- Keyword:
- cell tracking, human pluripotent stem cells, immunofluorescence, and signaling dynamics
- Citation to related publication:
- Teague, S., Primavera, G., Chen, B. et al. Time-integrated BMP signaling determines fate in a stem cell model for early human development. Nat Commun 15, 1471 (2024). https://doi.org/10.1038/s41467-024-45719-9
- Discipline:
- Health Sciences and Engineering
-
- Creator:
- Savier Elise L
- Description:
- Visual information can have different meanings across species and the same visual stimulus can drive appetite or avoidance behavior. The superior colliculus, a visual center located in the midbrain has been involved in driving such behaviors. Within this structure, the wide-field-vertical cells (WFV), a conserved morphological cell-types, has been found in reptiles to highly visual mammals. Here we report our investigation of the connectivity of the WFV, their visual response properties and how these responses are modulated by locomotion in the laboratory mouse. We also address the molecular definition of these cells and attempt to reconcile recent molecular definitions acquired by single-cell and single-nucleus RNA sequencing of the SC with the NTSR1-Cre GN209 transgenic mouse line which was previously used to investigate WFV neurons. We use viral strategies to reveal WFV inputs and outputs and confirmed their unique response properties using in vivo two-photon imaging. Among the stimuli tested, WFV preferred looming and a small moving spot and displayed a bias for upward direction. When assessing the effect of locomotion, we found that only visual responses driven by a looming stimulus showed a significant change. We identified several inputs to the WFV as potential candidate for this modulation. These results suggest that WFV integrate information across multiple brain regions and are subject to behavioral modulation. Taken together, our results pave the way to elucidate the role of these neurons in visual behavior and allow us to interrogate the definition of cell-types in the light of new molecular definitions.
- Keyword:
- neuroscience, superior colliculus, calcium imaging, neuroanatomy, wide-field vertical cells
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Fish Collection Cards report the number of individuals of each species captured. The cards also record what gear (for example seine or gill net) was used for surveys, where fish were sampled in the lake, and when and for how long sampling occurred.
- Keyword:
- lake, fish, gill net , seine, trap net, electrofishing, survey , and abundance
- Citation to related publication:
- King, K.B.S, Giacomini, H.C., Wehrly, K., López-Fernández, H., Thomer, A.K., & Alofs, K.M. (2023). Using historical fish catch data to evaluate predicted changes in relative abundance in response to a warming climate. Ecography. 2023:8. https://doi.org/10.1111/ecog.06798 and Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn , Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Lake Summary cards include information about the lake location and its characteristics, such as lake depth, water chemistry, water color, and transparency (commonly measured as Secchi depth). There is information on surrounding characteristics such as its connectivity to other waterbodies, shoreline conditions, and surrounding land-use. This card also lists the fishes present in the lake and makes observations about fishing pressure, parasites, and reproduction.
- Keyword:
- lake, fishes, depth, land use, temperature, thermocline, fishing pressure, and Secchi depth
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Alofs, Karen, Schell, Justin, King, Katelyn, Thomer, Andrea, Wehrly, Kevin, and Lopez-Fernandez, Hernan
- Description:
- Archives at the Institute for Fisheries Research (IFR) hold records of thousands of lake surveys from the University of Michigan and Michigan Department of Natural Resources. The records contained in this dataset are jpeg images of the index card records from the IFR surveys. Images include the front of the card and when available, the back of a card. and Fish Growth Cards report information on the age and length of fishes captured in lake surveys. The age of a fish was determined by counting annual rings on hard structures including scales, spines and otoliths (fish ear bones).
- Keyword:
- Lake, fish , length, age, and growth
- Citation to related publication:
- Erickson, Jim. "New crowdsourced project to digitize Michigan lake and fish records, looking for climate trends." University of Michigan School of Environment and Sustainability News. March 17, 2021. URL: https://seas.umich.edu/news/new-crowdsourced-project-digitize-michigan-lake-and-fish-records-looking-climate-trends
- Discipline:
- Science
-
- Creator:
- Wittkopp, Patricia J and Massey, Jonathan H
- Description:
- Data provided in this record were collected in the course of studying the genetic basis of differences in wing pigmentation and wing display between Drosophila elegans and Drosophila gunungcola.
- Citation to related publication:
- Massey, J. H., Rice, G. R., Firdaus, A. S., Chen, C.-Y., Yeh, S.-D., Stern, D. L., & Wittkopp, P. J. (2020). Co-evolving wing spots and mating displays are genetically separable traits in Drosophila. Evolution, 74(6), 1098–1111. https://doi.org/10.1111/evo.13990
- Discipline:
- Science
-
- Creator:
- Moore, Talia Y., Danforth, Shannon M., Larson, Joanna G., and Davis Rabosky, Alison R.
- Description:
- Warning signals in chemically defended organisms are critical components of predator-prey interactions, often requiring multiple coordinated display components for a signal to be effective. When threatened by a predator, venomous coral snakes (genus Micrurus) display a vigorous, non-locomotory thrashing behaviour that has been only qualitatively described. Given the high-contrast and often colourful banding patterns of these snakes, this thrashing display is hypothesized to be a key component of a complex aposematic signal under strong stabilizing selection across species in a mimicry system. By experimentally testing snake response across simulated predator cues, we analysed variation in the presence and expression of a thrashing display across five species of South American coral snakes. Although the major features of the thrash display were conserved across species, we found significant variation in the propensity to perform a display at all, the duration of thrashing, and the curvature of snake bodies that was mediated by predator cue type, snake body size, and species identity. We also found an interaction between curve magnitude and body location that clearly shows which parts of the display vary most across individuals and species. Our results suggest that contrary to the assumption in the literature that all species and individuals perform the same display, a high degree of variation persists in thrashing behaviour exhibited by Micrurus coral snakes despite presumably strong selection to converge on a common signal. This quantitative behavioural characterization presents a new framework for analysing the non-locomotory motions displayed by snakes in a broader ecological context, especially for signalling systems with complex interaction across multiple modalities.
- Keyword:
- aposematism, biomechanics, coral snake mimicry, curvature, Elapidae, non-locomotory motion, Peruvian Amazon, and snake behaviour
- Citation to related publication:
- Moore, T. Y., Danforth, S. M., Larson, J. G., & Davis Rabosky, A. R. (2020). A Quantitative Analysis of Micrurus Coral Snakes Reveals Unexpected Variation in Stereotyped Anti-Predator Displays Within a Mimicry System. Integrative Organismal Biology, 2(1). https://doi.org/10.1093/iob/obaa006
- Discipline:
- Science
-
- Creator:
- Ridley, Aaron and Cnossen, Ingrid
- Description:
- These are modeling results of the thermospheric and ionospheric response to the solar eclipse of August 21, 2017. The results are discussed in a research paper published in the Journal of Geophysical Research (doi: 10.1029/2018JA026402) .
- Citation to related publication:
- Cnossen, I., Ridley, A. J., Goncharenko, L. P., and Harding, B. J.. ( 2019), The response of the ionosphere‐thermosphere system to the August 21, 2017 solar eclipse. J. Geophys. Res. Space Physics, 124. https://doi.org/10.1029/2018JA026402
- Discipline:
- Science
-
- Creator:
- Burgin, Tucker and Mayes, Heather B.
- Description:
- This project aimed to discover and analyze the molecular mechanism of synthesis of two particular fucosylated oligosaccharide products in a mutant enzyme, Thermatoga maratima Alpha-L-Fucosidase D224G, whose wild type performs the opposite reaction (cleavage of fucosyl glycosidic bonds). Discovery of the mechanism was performed using an unbiased simulations method known as aimless shooting, whereas analysis of the mechanism in terms of the energy profile was performed using a separate method known as equilibrium path sampling. The data here concerns the latter method. and The contents of the atesa_master.zip are the ATESA GitHub project. A Python program for automating transition path sampling with aimless shooting using Amber. https://github.com/team-mayes/atesa
- Keyword:
- Equilibrium Path Sampling, Transition Path Sampling, Enzymatic Mechanism, and GH29
- Citation to related publication:
- Burgin, T., & Mayes, H. B. (2019). Mechanism of oligosaccharide synthesis via a mutant GH29 fucosidase. Reaction Chemistry & Engineering, 4(2), 402–409. https://doi.org/10.1039/C8RE00240A
- Discipline:
- Engineering
-
- Creator:
- dos Santos, Thiago, Steiner, Allison, Keppel-Aleks, Gretchen, and De Roo, Roger
- Description:
- Model simulations were conducted to investigate the role of soil moisture on the terrestrial carbon and water cycles. The data are composed of NetCDF files generated by the simulations that contain the data variables analyzed in the paper. and CLM5 Documentation - http://www.cesm.ucar.edu/models/cesm2/land/.
- Keyword:
- Soil moisture, Community Land Model 5, Latent heat, GPP, Gross primary productivity, and Fluxnet
- Citation to related publication:
- Santos, T. dos, Keppel-Aleks, G., Roo, R. D., & Steiner, A. L. (2021). Can Land Surface Models Capture the Observed Soil Moisture Control of Water and Carbon Fluxes in Temperate-To-Boreal Forests? Journal of Geophysical Research: Biogeosciences, 126(4), e2020JG005999. https://doi.org/10.1029/2020JG005999
- Discipline:
- Science
-
- Creator:
- Ruas, Terry, Ferreira, Charles H. P., Grosky, William, França, Fabrício O., and Medeiros, Débora M. R,
- Description:
- The relationship between words in a sentence often tell us more about the underlying semantic content of a document than its actual words, individually. Recent publications in the natural language processing arena, more specifically using word embeddings, try to incorporate semantic aspects into their word vector representation by considering the context of words and how they are distributed in a document collection. In this work, we propose two novel algorithms, called Flexible Lexical Chain II and Fixed Lexical Chain II that combine the semantic relations derived from lexical chains, prior knowledge from lexical databases, and the robustness of the distributional hypothesis in word embeddings into a single decoupled system. In short, our approach has three main contributions: (i) unsupervised techniques that fully integrate word embeddings and lexical chains; (ii) a more solid semantic representation that considers the latent relation between words in a document; and (iii) lightweight word embeddings models that can be extended to any natural language task. Knowledge-based systems that use natural language text can benefit from our approach to mitigate ambiguous semantic representations provided by traditional statistical approaches. The proposed techniques are tested against seven word embeddings algorithms using five different machine learning classifiers over six scenarios in the document classification task. Our results show that the integration between lexical chains and word embeddings representations sustain state-of-the-art results, even against more complex systems. Github: https://github.com/truas/LexicalChain_Builder
- Keyword:
- document classification, lexical chains, word embeddings, synset embeddings, chain2vec, and natural language processing
- Citation to related publication:
- Terry Ruas, Charles Henrique Porto Ferreira, William Grosky, Fabrício Olivetti de França, Débora Maria Rossi de Medeiros, "Enhanced word embeddings using multi-semantic representation through lexical chains", Information Sciences, 2020, https://doi.org/10.1016/j.ins.2020.04.048
- Discipline:
- Other, Science, and Engineering
-
- Creator:
- Ruas, Terry, Grosky, William, and Aizawa, Akiko
- Description:
- This data set is a collection of word similarity benchmarks (RG65, MEN3K, Wordsim 353, simlex999, SCWS, yp130, simverb3500) in their original format and converted into a cosine similarity scale. In addition, we have two Wikpedia Dumps from 2010 (April) and 2018 (January) in which we provide the original format (raw words), converted using the techniques described in the paper (MSSA, MSSA-D and MSSA-NR) (title in this repository), and also the word embeddings models for 300d and 1000d using a word2vec implementation. A readme.txt is provided with more details for each file.
- Keyword:
- multi-sense embeddings, MSSA, word2vec, wikipedia dump, synset, and natural language processing
- Citation to related publication:
- https://doi.org/10.1016/j.eswa.2019.06.026
- Discipline:
- Other
-
- Creator:
- Trung, Huy-Sinh, Liemohn, Michael W, and Ilie, Raluca
- Description:
- The goal of this research was to understand structures where the solar wind plasma contribution to the total plasma was equal to the ionospheric plasma. This simulation was performed over a simulation time of 12 hours for 4 different plasma compositions for 2 different solar wind profiles., The SWMF used the Block Adaptive Tree Solar wind Roe-type Upwind Scheme version 9.20. It can be found at http://csem.engin.umich.edu/tools/swmf/downloads.php. These data can be processed using the simulation code deposited at the Deep Blue Data record indicated in the "Citation to related material" field., and To cite this data set: Trung, H.-S., Liemohn, M., W., Ilie, R. (2019). 12 hour data for magnetospheric simulations for a multifluid plasma for 8 different configurations [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/fwq2-ey41
- Keyword:
- Space Physics, Magnetospheres, and 3D
- Citation to related publication:
- Trung, H.-S., Liemohn, M.W. Ilie, R. (2019). Steady State Characteristics of the Terrestrial Geopause [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/7w13-kq27
- Discipline:
- Science
-
- Creator:
- Li, Yang and Steiner, Allison
- Description:
- WRF-Chem simulation with 1.33 km resolution using the MYJ PBL scheme over the Baltimore-Washington region and WRF-Chem simulation with 1.33 km resolution using the YSU PBL scheme over the Baltimore-Washington region
- Keyword:
- LES, WRF-Chem, vertical mixing, oxidants, boundary layer dynamics
- Citation to related publication:
- Li, Y., Barth, M. C., and Steiner, A. L.: Comparing turbulent mixing of atmospheric oxidants across model scales, Atmospheric Environment, 199, 88-101, https://doi.org/10.1016/j.atmosenv.2018.11.004, 2018.
- Discipline:
- Science
-
- Creator:
- Morales, Annareli
- Description:
- The research that produced this data involves exploring the sensitivity of orographic precipitation to changes in microphysical parameters found in the Morrison microphysics scheme within CM1 model. These microphysical sensitivities are also tested within different environments. The tests can be described as "one-at-a-time" experiments, i.e., an individual parameter is perturbed while keeping the rest constant. Annareli Morales conducted this research for her PhD research while working at the Mesoscale and Microscale Meteorology lab at NCAR in Boulder, CO.
- Keyword:
- Orographic precipitation
- Citation to related publication:
- Morales, A., H. Morrison, and D. Posselt, 2018: Orographic precipitation response to microphysical parameter perturbations for idealized moist nearly neutral flow. Journal of Atmospheric Science, 75, 1933-1953, https://doi.org/10.1175/JAS-D-17-0389.1
- Discipline:
- Science
-
- Creator:
- Burleigh, M.
- Description:
- Brightness from an all-sky imager has been used as a spatiotemporal constraint for auroral inputs selected from in situ rocket measurements which are used to drive the ionospheric model. This method allows for realistic ionospheric forcing that is not captured in traditional "on-off" methods of describing PMAFs. Transient forcing (simulated PMAFs) and steady forcing ("on-off") simulations have been generated for comparison.
- Keyword:
- Poleward moving auroral forms, High-latitude ionosphere, Ionospheric modeling, Transient forcing, PMAF, GEMINI-TIA, and RENU2
- Citation to related publication:
- Burleigh, M., Zettergren, M., Lynch, K., Lessard, M., Moen, J., Clausen, L., Kenward, D., Hysell, D., and Liemohn, M. (2019). Transient ionospheric upflow driven by poleward moving auroral forms observed during the Rocket Experiment for Neutral Upwelling 2 (RENU2) campaign. Geophysical Research Letters. (Submitted).
- Discipline:
- Science
-
Galaxy Shape Catalogs for Dark Energy Survey Science Verification (DES-SV) Data - Additional Regions
- Creator:
- Das, Rutuparna and Dark Energy Survey (DES)
- Description:
- This dataset is associated with the University of Michigan Dept. of Physics dissertation titled "Shedding Light on the Dark: Exploring the Relation Between Galaxy Cluster Mass and Temperature Through Weak Gravitational Lensing" by Rutuparna Das. It is also associated with a paper, currently in preparation, by Das et al (details to be added once paper is submitted/accepted)., This work contains information about shapes of galaxies observed by the Dark Energy Survey (DES) during its Science Verification (SV) run. The official DES SV shape catalog has already been released to the public (see details in Jarvis et al. (2016), henceforth called "J16"). This work follows the methods presented in J16, and contains shapes from areas of the sky that were not processed as part of the official DES-SV catalog but were necessary for the work presented in the aforementioned dissertation. Each catalog contains information for galaxies in a 80′ × 80′ cutout centered at a given galaxy cluster., Note that these catalogs are not entirely analogous to the official DES-SV catalog. For one, we only measure shapes for galaxies, as stars and other objects were not needed for the dissertation. Our catalogs also only extend to a magnitude of 24 in r-band, whereas a small fraction of the objects in the official Im3shape catalog are dimmer (see Figure 29 of J16)., We also include other information necessary for weak lensing studies. Aside from all fields from Im3shape and noise bias calibration (listed and described in J16), these catalogs contain columns for object positions (“ra_gold”, “dec_gold”) and magnitudes in various filters (“mag_detmodel_g”, “mag_detmodel_r”, “mag_detmodel_i”, “mag_detmodel_z”) from the SVA1-Gold catalog ( https://des.ncsa.illinois.edu/releases/sva1/docs/docs-gold). Additionally, we include mean redshift measurements from two DES photo-z measurement pipelines, TPZ and DESDM Neural Network (“z_TPZ”, “z_DESDMnn”) (more details in Sanchez et al. (2014))., and References: Jarvis, M., Sheldon, E., Zuntz, J., et al. 2016, Monthly Notices of the Royal Astronomical Society, 460, 2245. Sanchez, C., Carrasco Kind, M., Lin, H., et al. 2014, Monthly Notices of the Royal Astronomical Society, 445, 1482.
- Keyword:
- weak lensing, galaxy clusters, galaxy shapes, cluster cosmology, Dark Energy Survey, DES, and galaxy shape catalogs
- Discipline:
- Science
-
- Creator:
- Dorman, Cole J
- Description:
- CHIME provides accurate measurements while enabling inter-spacecraft calibration in constellation missions, offering a significantly more affordable alternative to traditional magnetometers without compromising measurement quality. The development of CHIME is motivated by the high number of magnetometers needed in spacecraft constellations that require a cost-effective commercial solution, as traditional, precise magnetometers are expensive and require complex ground and on-orbit calibration methods that depend on geomagnetic models or special conditions. CHIME Accuracy Calibration: - Various PNI RM3100s were used for data collection, each specified when used and how - Ground CHIME was used for experiments (50 turns per axis, hand wound) - Bartington HC1 500 mm Helmholtz coil was used for calibration baseline experiments. - Python 3.7+ Coil Homogeneity Simulations: - Python 3.7+ Optimal Calibration Pulse Parameters: - Python 3.7+ - ESA Swarm Simulation Data 50 Hz: Level 1B MAGx_HR ( https://swarm-diss.eo.esa.int). - ESA Swarm Simulation Data 1 Hz: Level 1B MAGx_LR. CHIME Calibration Accuracy Across Orbital Environments: - Python 3.7+ - ESA Swarm Simulation Data 50 Hz: Level 1B MAGx_HR ( https://swarm-diss.eo.esa.int). Comparison Simulations of Single Sensor Attitude Indepedent Calibration Methods: - Python 3.7+ - ESA Swarm Simulation Data 50 Hz: Level 1B MAGx_HR ( https://swarm-diss.eo.esa.int). Definitions: CHIME- protagonist of the dataset and accompanying manuscript, the self-calibrating magnetometer Scale Factor (SF), Non-Orthogonality (NO)- forms of magnetic sensor error PNI RM3100- internal magnetic sensor in CHIME Bartington HC1 Coil- calibration tool for the RM3100 and CHIME, a Helmholtz coil itself. ESA - European Space Agency
- Keyword:
- magnetometer, calibration, Helmholtz, spacecraft, and remote sensing
- Citation to related publication:
- Dorman, C.J., Vata, J., Ojeda, L. V., Moldwin, M.B., The CHIME Magnetometer: A Self-Calibrating Approach for Enhanced Accuracy in Spaceborne Applications, Forthcoming.
- Discipline:
- Engineering
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses through the EPA’s national School Bus Rebate Program on attendance, educational performance, and community air quality (PM2.5). Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the changes in school district average attendance, test scorers (reading language arts and math), and PM2.5 levels after vs before the 2012 through 2017 lotteries by funding selection status.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, Attendance, Test scores, Educational performance, PM2.5, Air pollution, and Air quality
- Citation to related publication:
- Adar SD, Pedde M, Hirth R, Szpiro A. 2024. Assessing the National Health, Education, and Air Quality Benefits of the United States Environmental Protection Agency’s School Bus Rebate Program: A Randomized Controlled Trial Design. Research Report 221. Boston, MA: Health Effects Institute. https://www.healtheffects.org/publication/assessing-national-health-education-and-air-quality-benefits-united-states-environmental
- Discipline:
- Health Sciences
-
- Creator:
- Heath, Jeffrey
- Description:
- Tebul Ure is a Dogon language spoken on the heights in a horseshoe valley between Bamba and Yanda on the eastern edge of the Dogon (Bandiagara) plateau in central Mali. A grammar is drafted but incomplete as of May 2018. Texts were transcribed from dictation in 2012 in the Tebul area, and others were recorded digitally in 2015 at a nearby town on the plateau. Six of the 2015 texts have been transcribed. The texts are included at the end of the grammar. I grant permission to other linguists to transcribe, translate, or analyse any texts that remain untranscribed beginning 2022.
- Keyword:
- Tebul Ure, Dogon, Mali, Audio, and Recording
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Renno, Nilton O., Mohan, Paul, Musko, Stephen, and Madathil, Rohan
- Description:
- The file named "Raw_Reference+OIDU_Data.xlsx" contains both raw data from the Phenom 300 reference scientific measurements and raw data from measurements by the Icing Detection System (IDS) Optical Icing Detection Unit (OIDU) installed in the Phenom 300. Each tab of the file named "Raw_Reference+OIDU_Data.xlsx" contains data from a specific flight with the flight number in the tab. Each tab contains columns for measurement time (in seconds of the UTC day), 905 nm OIDU signal (in counts), 1525 nm signal (in counts), 1635 nm signal (in counts), flight altitude (in ft), air temperature (in degrees C), liquid water content -LWC (in g/m^3), total water content -TWC (in g/m^3), ice water content -ICW (in g/m^3), and median volume diameter -MVD (in micron)., The file named "Raw_MRU_Data.xlsx" contains raw data from measurements made by the microwave resonator unit (MRU). The various columns contain data from engineering measurements and icing detection measurements. The data scientific relevant are in column A -the time stamp in UNIX time, column B -the time stamp in seconds of the GMT day, column G -the peak resonator frequency (Hz), and column H -the resonance quality factor (non-dimensional)., and The file named "Appendix-C-O_Data_Explained.xlsx" contains processed data from measurements by the Phenom 300 reference scientific measurements and processed data from measurements by the Icing Detection System (IDS) Optical Icing Detection Unit (OIDU) installed in the Phenom 300. As explained in Renno et al. (2025), the raw data was reduced by removing data points reported to contain measurement errors (identified by the NAN code in the data) and in-cloud measurements in which TWC ≤ 0 or MVD ≤ 0 before being analyzed. Each data column is described in the first tab.
- Keyword:
- aircraft icing
- Citation to related publication:
- Renno et al. (2025), A New Type of Aircraft Icing Detection System, Nature Scientific Research.
- Discipline:
- Engineering
-
- Creator:
- Camper, SA, Brinkmeier, ML, George, AS, Cheung, LYM, Mills, RE, and Melamed, P
- Description:
- We used FastQC to trim poor quality reads and Tuxedo Suite, TopHat, and Bowtie for alignment. Read counts are expressed in transcripts per kilobase million (TPM). and Bulk RNA seq data has been deposited in Geo (GSE277389). Embryonic pituitary cDNA clone end sequences are deposited at https://fantom.gsc.riken.jp/data/.
- Keyword:
- pituitary gland gene expression
- Discipline:
- Health Sciences
-
- Creator:
- Heath, Jeffrey
- Description:
- Documentary fieldwork on Tebul Ure and other Dogon languages (grammars, lexicons, texts, audio, video). This deposit contains only audio recordings but links out to other pieces of the work.
- Keyword:
- Tebul Ure, Dogon, and Audio
- Discipline:
- Humanities
-
- Creator:
- Gable, Sydney L and Huang, Yihe
- Description:
- This dataset includes a catalog of events for the 2019 Ridgecrest, CA earthquake sequence with calibrated relative moment magnitude estimates. We include results from all cases described in Gable and Huang 2024b.
- Keyword:
- relative magnitude, earthquakes, earthquake magnitude, moment magnitude, and local magnitude
- Citation to related publication:
- Gable, S.L., and Y. Huang (2024). Quantifying Magnitude Uncertainty of the 2019 Ridgecrest Earthquake Sequence Through a Sensitivity Study of the Relative Magnitude Method. Bull. Seismol. Soc. Am. (in production)
- Discipline:
- Science
-
- Creator:
- Colón-Rodríguez, Stephanie, Liemohn, Michael, and Raines, Jim
- Description:
- During its trajectory, Wind spent a significant amount of time in the magnetotail, where its SupraThermal Ion Composition Spectrometer (STICS) measured the mass and mass per charge of protons, alpha particles, and heavy ions with an energy/charge ratio up to 226 keV/e. Although STICS originally aimed to measure the abundance of these ion species in the solar wind, its measurements within the magnetosphere from 1995 to 2002 help us identify preferential entry between the different solar wind ion species. This study statistically analyzes how the ratio between solar wind heavy ions and alpha particles (Heavies Solar Wind / He2+) varies for different upstream conditions and locations within the magnetosphere: northward vs. southward Interplanetary Magnetic Field (IMF), low vs. high solar wind density (Nsw), low vs. high solar wind dynamic pressure (PDyn), slow vs. fast solar wind (Vsw), and dawn vs. dusk. Our results indicate that the HeaviesSolar Wind enter the magnetosphere more efficiently than He2+ during northward IMF and that the Heavies Solar Wind / He2+ ratios decrease during high PDyn. In addition, the Heavies Solar Wind / He2+ ratios exhibit a dawn-dusk asymmetry, highly skewed towards the dawn side for all upstream cases likely due to charge-exchange processes.
- Keyword:
- Magnetosphere, Wind STICS, Solar wind heavy ions, Alpha particles, dawn-dusk asymmetry
- Citation to related publication:
- Colón-Rodríguez, S., Liemohn, M. W., & Raines, J. M (2024). Solar wind heavy ions and alpha particles within Earth’s magnetosphere and their variability with upstream conditions. Journal of Geophysical Research Space Physics. In preparation.
- Discipline:
- Science
-
- Creator:
- Alvarado, Roman, Hodges, Cameron, Sukovich, Jonathan, Greve, Joan, and Meiners, Jens-Christian
- Description:
- We study the pathophysiology of spinal cord decompression sickness. We saturated ex-vivo bovine spinal cord tissue with nitrogen, partially decompressed the samples to induce bubble formation, and then probed the mechanical response of the surrounding tissue by pressure-cycling.
- Keyword:
- Decompression Sickness
- Citation to related publication:
- Alvarado, et al. (2024). Mechanical Damage to Spinal Cord Tissue from Decompression Bubble Expansion. To be submitted to Journal of Neurotrauma
- Discipline:
- Science
-
- Creator:
- Esquivel, Amanda and Ajdaroski, Mirel
- Description:
- The ability to accurately measure tibiofemoral angles during various dynamic activities is of clinical interest. The purpose of this study was to determine if inertial measurement units (IMUs) can provide accurate and reliable angle estimates during dynamic actions. A tuned quaternion conversion (TQC) method tuned to dynamics actions was used to calculate Euler angles based on IMU data and these calculated angles were compared to a motion capture system (our “gold” standard) and a commercially available sensor fusion algorithm. Nine healthy athletes were in-strumented with APDM Opal IMUs and asked to perform nine dynamic actions; five participants were used in training the parameters of the TQC method with the remaining four used to test validity.
- Keyword:
- wearable sensors
- Citation to related publication:
- Ajdaroski M, Esquivel A. Can Wearable Sensors Provide Accurate and Reliable 3D Tibiofemoral Angle Estimates during Dynamic Actions? Sensors. 2023; 23(14):6627. https://doi.org/10.3390/s23146627
- Discipline:
- Engineering
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Cranium of Castoroides (University of Michigan Museum of Paleontology catalog number UMMP VP 3110) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data resulting from a merge of two separate scans are offered here as a series of unsigned 16-bit integer TIFF images. There may be slight differences in voxel grey values between the two parts. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Castoridae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and 31eda2a8-fcbc-8f52-1990-0958711906a3
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Cranium of Castoroides (University of Michigan Museum of Paleontology catalog number UMMP VP 3110) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, Castoridae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and 31eda2a8-fcbc-8f52-1990-0958711906a3
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Cranium of Castoroides (University of Michigan Museum of Paleontology catalog number UMMP VP 3110) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Castoridae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and 31eda2a8-fcbc-8f52-1990-0958711906a3
- Discipline:
- Science
-
- Creator:
- Dhillon, Paramveer, Panda, Anmol, and Hemphill, Libby
- Description:
- The internet has significantly transformed how news is produced, consumed, and distributed. As a result, the news industry has transitioned from ad-supported to subscription-based models regulated by digital paywalls. In light of this disruption, it’s crucial to investigate not only how news consumers adapt to this change but also how economic incentives shape content coverage. We analyzed the staggered adoption of digital paywalls by 17 regional U.S. newspapers over 17 years in a difference-in-difference framework to examine the impact of paywall adoption on topical news content coverage. Our results reveal a small but significant decrease in local and soft news coverage, with varying effects across different urban contexts. Specifically, local news coverage experienced a more substantial decline in smaller cities (population < 500,000) and regions experiencing an influx of younger residents (age < 40 years). Conversely, soft news coverage increased in areas with a younger demographic influx, indicating a strategic shift by newspapers to cater to digital-savvy audiences and adapt to changing consumption patterns. Our findings underscore the delicate balance between financial imperatives and editorial choices in the newspaper industry and highlight the need for ongoing research into the effects of digital monetization strategies on journalistic content creation, media plurality, and civic accountability.
- Keyword:
- news media; paywalls; causal inference
- Discipline:
- Social Sciences
-
- Creator:
- GLERL
- Description:
- The survival and beta models forecasting ice cover around the Apostle Island National Lakeshore use Lake Superior surface water temperature data collected from the Great Lakes Environmental Research Laboratory (GLERL). GLERL hosts Lake Superior surface water temperature data pre-1995 from the Large Lake Thermodynamics Model (LLTM) and post-1995 from the Great Lakes Surface Environmental Analysis (GLSEA). The pre-1995 data is currently being moved and is unavailable from GLERL, and therefore, the (entire) surface water temperature record used by the models is hosted here. Please see the methods for direct data access links. The LLTM, the source of the pre-1995 data, is described in Croley II, T. E., & Assel, R. A. (1994). A one-dimensional ice thermodynamics model for the Laurentian Great Lakes. Water Resources Research, 30(3), 625–639. Documentation on GLSEA can be found on their website.
- Keyword:
- Lake Superior, Surface Water Temperature, LLTM, GLSEA, and Apostle Islands
- Discipline:
- Science
-
- Creator:
- Dumlao, James M. Zumel and Teplitskiy, Misha
- Description:
- The data sources and methods used to process the raw data are described in the paper forthcoming in Science and the associated Supplementary Information. A preprint for an earlier version of this paper is available here: https://osf.io/preprints/socarxiv/754e3. These data are anonymized (see Methodology for details). Consequently, running the same code on these data vs. the data in the paper does not yield *identical* results but qualitatively similar ones.
- Keyword:
- peer review, double-anonymization, geographic diversity, homophily, fairness, and bias
- Citation to related publication:
- J. M. Z. Dumlao, M. Teplitskiy, Science, forthcoming. and Zumel Dumlao, J. M. and M. Teplitskiy. 2023. “The Effect of Reviewer Geographical Diversity on Evaluations Is Reduced by Anonymizing Submissions”. Retrieved (osf.io/preprints/socarxiv/754e3).
- Discipline:
- Science and Social Sciences
-
Neuronal splicing of the unmethylated histone H3K4 reader, PHF21A, prevents excessive synaptogenesis
- Creator:
- Nagai, Masayoshi, Porter, Robert S., Miyasato, Maxwell, Wang, Aijia, Gavilan, Cecilia M., Hughes, Elizabeth D., Wu, Michael C., Saunders, Thomas L., and Iwase, Shigeki
- Description:
- LSD1 histone H3K4 demethylase and its binding partner PHF21A, a reader protein for unmethylated H3K4, both undergo neuron-specific microexon splicing. The LSD1 neuronal microexon weakens H3K4 demethylation activity and can alter the substrate specificity to H3K9 or H4K20. Meanwhile, the PHF21A neuronal microexon interferes with nucleosome binding. However, the temporal expression patterns of LSD1 and PHF21A splicing isoforms during brain development remain unknown. In this work, we report that neuronal PHF21A isoform expression precedes neuronal LSD1 isoform expression during human neuron differentiation and mouse brain development. The asynchronous splicing events resulted in stepwise deactivation of the LSD1-PHF21A complex in reversing H3K4 methylation. We further show that the enzymatically inactive LSD1-PHF21A complex interacts with neuron-specific binding partners, including MYT1-family transcription factors and post-transcriptional mRNA processing proteins such as VIRMA. The interaction with the neuron-specific components, however, did not require the PHF21A microexon, indicating that the neuronal proteomic milieu, rather than the microexon-encoded PHF21A segment, is responsible for neuron-specific complex formation. These results indicate that the PHF21A microexon is dispensable for neuron-specific protein-protein interactions, yet the enzymatically inactive LSD1-PHF21A complex might have unique gene-regulatory roles in neurons.
- Citation to related publication:
- Nagai, M., Porter, R. S., Miyasato, M., Wang, A., Gavilan, C. M., Hughes, E. D., Wu, M. C., Saunders, T. L., Iwase, S. Neuronal splicing of the unmethylated histone H3K4 reader, PHF21A, prevents excessive synaptogenesis. Journal of Biological Chemistry (2024).
- Discipline:
- Science
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses on student attendance through the EPA’s national School Bus Rebate Program. Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the change in school district level attendance rates after vs before the 2012 through 2017 lotteries by funding selection status . We used overall district attendance rates since rates were not available for only school-bus riders.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, and School Attendance
- Citation to related publication:
- Pedde, M., Szpiro, A., Hirth, R. et al. Randomized design evidence of the attendance benefits of the EPA School Bus Rebate Program. Nat Sustain (2023). https://doi.org/10.1038/s41893-023-01088-7
- Discipline:
- Health Sciences
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses on students' educational performance through the EPA’s national School Bus Rebate Program. Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the change in school district level reading and language arts and math standardized test scores after vs before the 2012 through 2016 lotteries by funding selection status . We used overall district average standardized test scores since rates were not available for only school-bus riders.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, and Student standardized testing
- Citation to related publication:
- Pedde, M., Szpiro, A., Hirth, R., Adar, S. School Bus Rebate Program and Student Educational Performance Test Scores. JAMA Network Open (2024). https://doi.org/10.1001/jamanetworkopen.2024.3121
- Discipline:
- Health Sciences
-
- Creator:
- A. Abeid, Bachir , L. Fabiilli, Mario , Aliabouzar, Mitra, and Estrada, Jon B.
- Description:
- Images of droplet dynamics during and after optical excitation experiments were recorded in the ultra-fast regime at 1 million frames per second (fps) while the low-speed, quasi-static evolution was carried at 1 fps. During both the inertial and quasi-static phases, we record 1–3 frames in the reference configuration prior to the arrival of the laser-pulse to distinguish the bubble from the background. Lastly, due to the complex physics of plasma formation and chemistry, forward simulations begin at the time when the bubble reaches its maximum expansion
- Keyword:
- optical droplet vaporization, cavitation, viscoelasticity, ultra-high-speed imaging, hydrogel, numerical modeling.
- Citation to related publication:
- Abeid, Bachir A, et al. (2024). Experimental and numerical investigations of ultra-high-speed dynamics of optically induced droplet cavitation in soft materials
- Discipline:
- Science and Engineering
-
- Creator:
- Hawes, Jason K
- Description:
- Most of this deposit is composed of a step-by-step explanation of how to replicate the work conducted in Chapters 2 and 5 of my dissertation (available in DeepBlue Documents under the title Urban Agriculture: Good for People, Places, and Planet?). Very little actual data is catalogued here, instead largely relying on links to the secondary datasets online. In fact, this is an intentional choice, since any replication would likely want updated data to produce more real-time results. This deposit is intended to accompany the dissertation and may not be the final version of these two manuscripts or their associated methods. For more up-to-date methods and analysis, please search Google Scholar or your affiliated library for Jason Hawes and some combination of keywords including urban agriculture, scaling-up, tradeoffs, or the names of the cities in question.
- Keyword:
- urban agriculture, tradeoffs, remote sensing, and multi-criteria analysis
- Discipline:
- Social Sciences
-
- Creator:
- Wu, Wenbing, Kadar, Alain, Lee, Sang Hyun, Jung, Hong Ju, Park, Bum Chul, Raymond, Jeffery, Tsotsis, Thomas, Cesnik, Carlos, Glotzer, Sharon, Goss, Valerie, and Kotov, Nicholas
- Description:
- The goal of this project is to relate properties of nanowire networks to their structure. The structure of these networks was determined from electron and atomic force microscopy, which were used as the basis for property predictions. Properties include sheet resistance, conductive anisotropy, absorption spectra, and current capacity.
- Keyword:
- structural complexity, nanowires, graph theory (GT), complex particle systems, complex composites, correlated disorder
- Citation to related publication:
- Preprint: https://arxiv.org/pdf/2310.15369
- Discipline:
- Engineering
-
- Creator:
- El Shair, Zaid A., Abu-raddaha, Abdalmalek , Cofield, Aaron, Alawneh, Hisham, Aladem, Mohamed, Hamzeh, Yazan, and Rawashdeh, Samir A.
- Description:
- The SID dataset was curated to support advanced research in autonomous driving systems, particularly focusing on perception under adverse weather and lighting conditions. This dataset encompasses over 178k high-resolution stereo image pairs organized into 27 sequences, reflecting a rich variety of conditions such as snow, rain, fog, and low light. It covers dynamic changes in driving scenarios and environmental backgrounds, including university campuses, residential streets, and urban settings. The dataset is designed to challenge perception algorithms with scenarios such as partially obscured camera lenses and varying visibility, promoting the development of robust computer vision models. No specialized software or scripts are necessary for accessing the image data, as the files are provided in standard PNG format. However, researchers and developers may require their image processing and computer vision toolkits to utilize the dataset effectively in their work.
- Keyword:
- Autonomous Driving, Adverse Weather, Stereo Vision, Image Dataset, Computer Vision, and Perception Algorithms
- Citation to related publication:
- El-Shair, Z.A., Abu-raddaha, A., Cofield, A., Alawneh, H., Aladem, M., Hamzeh, Y. and Rawashdeh, S.A., 2024, July. SID: Stereo Image Dataset for Autonomous Driving in Adverse Conditions. In NAECON 2024-IEEE National Aerospace and Electronics Conference (pp. 403-408). IEEE.
- Discipline:
- Engineering
-
- Creator:
- Ye, Zhengwei and Mi, Zetian
- Description:
- Generation of C2+ compounds using sunlight, carbon dioxide, and water provides a promising path for carbon neutrality. The exploration of a catalyst to break the bottleneck of C-C coupling, for constructing a rational artificial photosynthesis integrated device, is at the core. Herein, based on operando spectroscopy measurements, theoretical calculations, and feedstock experiments, it is discovered that gold, in conjunction with iridium, can catalyze the reduction of CO2, achieving C-C coupling by insertion of CO2 into -CH3. Owing to a combination of optoelectronic and catalytic properties, the assembly of AuIr with InGaN nanowires on silicon (AuIr@InGaN NWs/Si) enables the achievement of a C2H6 activity of 58.8 mmol‧g-1‧h-1 with a turnover number of 54,595 over 60 hours. A light-to-fuels efficiency of ~0.59% for solar fuels production from CO2 and H2O is achieved without any other energy inputs. This work provides a carbon-negative path for producing higher order C compounds.
- Keyword:
- Carbon dioxide reduction and Photocatalysis
- Discipline:
- Science
-
- Creator:
- Quartey, Nii-Boi A and Liemohn, Michael W
- Description:
- This dataset contains results from the BATS-R-US multispecies MHD code simulating the solar wind interaction at Mars at the following orbital and solar cycle locations: solar maximum at perihelion, solar maximum at aphelion, solar minimum at perihelion, solar minimum at aphelion. These simulations contain results with and without the crustal magnetic fields and includes variables such as the magnetic field and ion density.
- Keyword:
- mars, magnetosphere, magnetotail, current sheet, asymmetry, multispecies, multifluid, MHD, and MAVEN
- Discipline:
- Science
-
- Creator:
- Aluko, Olanrewaju
- Description:
- This investigation utilizes a new and more accurate multiscale analysis that combines molecular dynamics and polycrystalline theory with micromechanics to capture the influence of the amorphous boron nitride interphase thickness on the mechanical properties of the SiC/SiC composites.
- Keyword:
- Multiscale; Reinforce; Micromechanics; Interphase
- Citation to related publication:
- O. Aluko .The Impact of the Interphase thickness on the Elastic Properties of Unidirectional SiC/SiC Composites. Forthcoming.
- Discipline:
- Engineering
-
- Creator:
- An, Yifu
- Description:
- We have ported our MHD code, BATSRUS ( https://github.com/SWMFsoftware/BATSRUS), to the GPU. This dataset contains the input parameters and raw timing results for the Paper (being revised). To reproduce the results on the supercomputers Frontera and Pleiades, the user need to load modules nvhpc 20.7 for compiling on frontera, nvhpc 24.3-nompi + mpi-hpe/mpt for compiling on Pleiades. and Abstract: BATSRUS, our state-of-the-art extended magnetohydrodynamic code, is the most used and one of the most resource-consuming model in the Space Weather Modeling Framework. It is ever our objective to improve its efficiency and speed with emerging techniques, such as GPU acceleration. To utilize the GPU nodes on modern supercomputer, we port BATSRUS to GPUs with the OpenACC API. Porting the code to a single GPU requires to rewrite and optimize the most used functionalities of the original code into a new solver, which accounts for around 1% of the entire program. To port it to multiple GPUs, we implement a new message passing algorithm to support its unique block adaptive grid feature. We conduct weak scaling tests on as many as 64 GPUs on two supercomputers, and find good performance for up to 16 GPUs. The program is able to retain 65-80% parallel efficiency within one node (up to 4 GPUs), and 40-60% efficiency for 16 GPUs. Applications on more GPUs have reduced efficiency but remain operationally meaningful. Profiling shows that the loss of efficiency is due to the communication latency between supercomputer nodes. We also demonstrate our ability to run representative magnetosphere simulations on GPUs. The performance for a single V100 GPU is about the same as 140 Intel Xeon E5-2680v4 ''Broadwell'' CPU cores, and it runs about twice as fast as real time. The code can run 4 times faster than real time on 4 V100 or 16 RTX 5000 GPUs.
- Keyword:
- BATSRUS, GPU, and MHD simulation
- Citation to related publication:
- An, Y., Chen, Y., Zhou, H. and Toth, G. (2024). BATSRUS GPU: Faster than Real Time Magnetospheric Simulations with a Block Adaptive Grid Code. Being revised.
- Discipline:
- Engineering
-
- Creator:
- MacEachern, Mark
- Description:
- The search data supports a literature review project on lifestyle therapies for the management of atrial fibrillation. The data included in the dataset are the reproducible search strategies (in docx) and the exported results of all citations from all databases (txt and ris files). These searches and exported result files contain all citations originating from the database searches that were considered for inclusion.
- Keyword:
- literature searches, atrial fibrillation, lifestyle therapy, and lifestyle therapies
- Citation to related publication:
- Abdul-Aziz AA, Altawil M, Lyon A, MacEachern M, Richardson CR, Rubenfire M, Pelosi F Jr, Jackson EA. Lifestyle Therapy for the Management of Atrial Fibrillation. Am J Cardiol. 2018 May 1;121(9):1112-1117. doi: 10.1016/j.amjcard.2018.01.023. PubMed PMID: 29650239., https://www.ncbi.nlm.nih.gov/pubmed/29650239, and https://doi.org/10.1016/j.amjcard.2018.01.023
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P and Criss, Cory N
- Description:
- While collaboration with industry is paramount to innovation, the recent emphasis on industrial relationship transparency has sparked new guidelines, research studies, and standardizations focused on re-defining conflict of interest. There is limited data on defining the specific financial amount wherein a conflict of interest is relevant. This study is the first to assess the potential financial effects on high-quality clinical data, or the “indirect sponsorship”.
- Keyword:
- Sponsorship, Indirect sponsorship, Surgery, Robotic surgery, and DaVinci
- Citation to related publication:
- Criss CN, MacEachern MP, Matusko N, Dimick JB, Maggard-Gibbons M, Gadepalli SK. The Impact of Corporate Payments on Robotic Surgery Research: A Systematic Review. Ann Surg. 2019 Mar; 269 (3): 389-396. doi: 10.1097/SLA.0000000000003000. PMID: 30067545. https://doi.org/10.1097/SLA.0000000000003000
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P
- Description:
- The dataset represents the complete search strategies for all literature databases searched during the systematic review. The Endnote and Excel files of all citations considered for inclusion in the review are also included.
- Keyword:
- systematic review, pharmacy, education, addiction, and substance abuse
- Citation to related publication:
- Andrew J. Muzyk, Emily Peedin, Juliana Lipetzky, Haley Parker, Mark P. McEachern & Kelan Thomas (2017) Substance use education in US schools of pharmacy: A systematic review of the literature, Substance Abuse, 38:4, 455-463, https://doi.org/10.1080/08897077.2017.1341448 and https://www.ncbi.nlm.nih.gov/pubmed/28605276
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P
- Description:
- The dataset represents the complete search strategies for all literature databases searched during the systematic review. The Endnote library that contains all citations is also included.
- Keyword:
- Systematic review, Anti-osteoporotic drugs, Fractures, Surgery, and Meta-analysis
- Citation to related publication:
- Saito, T., Sterbenz, J.M., Malay, S. et al. "Effectiveness of anti-osteoporotic drugs to prevent secondary fragility fractures: systematic review and meta-analysis." Osteoporosis International (2017) 28: 3289. https://doi.org/10.1007/s00198-017-4175-0 and https://www.ncbi.nlm.nih.gov/pubmed/28770272
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P MLIS, Bennett, Katelyn G MD, Preminger, Aviva MD, Berlin, Nicolas MD, and Vercler, Christian J MD
- Description:
- The dataset includes the reproducible search strategies for all literature databases searched during the review, the key articles used to generate relevant search terms and test the effectiveness of the searches, the Endnote library that has all citations considered for inclusion, a flow chart describing the screening process, and the screening forms used for inclusion and exclusion.
- Keyword:
- Plastic surgery, Professionalism, Surgery, and Social media
- Citation to related publication:
- Bennett K, Berlin N, MacEachern MP, Buchman S, Vercler C. (2018). The ethical and professional use of social media in surgery - A systematic review of the literature. Plastic and Reconstructive Surgery, 142(3), 388e-398e. PMID: 30148789. https://doi.org/10.1097/prs.0000000000004692
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P
- Description:
- The dataset represents the complete, reproducible search strategies for all literature databases searched during the systematic review. The Endnote file and the Endnote import files contain all citations considered for inclusion in the review.
- Keyword:
- addiction, nursing, systematic review, education, and substance use
- Citation to related publication:
- Smothers, Zachary MBS; Reynolds, Victoria PharmD; McEachern, Mark MLIS; Derouin, Anne L. DNP, RN, CPNP, FAANP; Carter, Brigit M. PhD, RN, CCRN; Muzyk, Andrew PharmD Substance Use Education in Schools of Nursing, Nurse Educator: May/June 2018 - Volume 43 - Issue 3 - p 136-139. https://doi.org/10.1097/NNE.0000000000000449 and https://www.ncbi.nlm.nih.gov/pubmed/28858952
- Discipline:
- Health Sciences
-
- Creator:
- Berlin, Nicholas and MacEachern, Mark
- Description:
- This systematic review and meta-analysis assesses decision aids in the context of patients considering post-mastectomy breast reconstruction. and NOTE: An updated Read Me file was added to this data set on May 24, 2018 replacing the original.
- Keyword:
- Post-mastectomy, Decision-making, Systematic review, Decision aids, Meta-analysis, and Breast reconstruction
- Citation to related publication:
- Berlin NL, Tandon VJ, Hawley ST, et al. Feasibility and Efficacy of Decision Aids to Improve Decision Making for Postmastectomy Breast Reconstruction: A Systematic Review and Meta-analysis. Med Decis Making. 2019;39(1):5–20. https://doi.org/10.1177/0272989X18803879
- Discipline:
- Health Sciences