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- Creator:
- Salaree, Amir, Spica, Zack, and Huang, Yihe
- Description:
- The items in this bundle are supporting videos to a study of subsea seismo-acoustics carried out regarding an earthquake in the Persian Gulf. The main data used in the study is a diver's recording of the acoustic waves from the earthquake. The epicenter and topography data used in this study are publicly available as cited in the README.txt file.
- Keyword:
- Seismo-acoustics, Persian Gulf, Divers’ Microphones, Seismic Hazard, Early Warning
- Discipline:
- Science
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- Creator:
- Gliske, Stephen V and Stacey, William C
- Description:
- This data is part of a large program to translate detection and interpretation of HFOs into clinical use. A zip file is included which contains hfo detections, metadata, and Matlab scripts. The matlab scripts analyze this input data and produce figures as in the referenced paper (note: the blind source separation method is stochastic, and so the figures may not be exactly the same). A file "README.txt" provides more detail about each individual file within the zip file.
- Keyword:
- hfo, high frequency oscillation, ripple, fast ripple, blind source separation, non-negative matrix factorization, and temporal variability
- Discipline:
- Science, Engineering, and Health Sciences
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- Creator:
- Gliske, Stephen V and Stacey, William C
- Description:
- This data repository includes the quantitative features of high frequency, intracranial EEG along with all necessary scripts to reproduce the figures of the accompanying manuscript.
- Keyword:
- high frequency oscillation, HFO, high frequency activity, and epilepsy
- Citation to related publication:
- (under review)
- Discipline:
- Science, Engineering, and Health Sciences
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- Creator:
- Mark Flanner
- Description:
- This dataset includes spectrally-resolved optical properties for volcanic ash particles from the 2010 Eyjafjallajökull volcanic eruptions. These properties were used in the climate simulations described by Flanner et al. (2014, doi:10.1002/2014JD021977) to quantify ash radiative forcing from the eruptions.
- Keyword:
- ash, volcano, aerosols, Eyjafjallajökull, climate, and radiative transfer
- Citation to related publication:
- Flanner, M.G., Gardner, A.S., Eckhardt, S., Stohl, A., & Perket, J. (2014). Aerosol radiative forcing from the 2010 Eyjafjallajökull volcanic eruptions. Journal of Geophysical Research: Atmospheres. https://doi.org/10.1002/2014JD021977
- Discipline:
- Science
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- Creator:
- Singer, Kanakadurga
- Description:
- Supplementary Figure 1. Tissue weights in response to HFD feeding and CL treatment. (A) GWAT weight as % of body weight (B) IWAT weight as % of body weight (C) BAT weight as % of body weight (D) Liver weight as % of body weight. N=7-12 /group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001; error bars are SEM. Comparisons of M ND PBS vs F ND PBS are shown as #p<0.05, ##p<0.01, ###p<0.005 and M HFD PBS vs F HFD PBS are shown as &p<0.05, &&p<0.01, &&&p<0.005, &&&&p<0.0001., Supplementary Figure 2. Free glycerol estimation in lean and obese male and female WAT and BAT depot explants with ADRB3 stimulated lipolysis. Free glycerol estimation in lean and obese (A) GWAT (B) IWAT (C) BAT explant tissues. Free glycerol released calculated as fold change over basal conditions in lean and obese (D) GWAT (E) IWAT (F) BAT explant tissues. N=8 /group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001; error bars are SEM. Comparisons of M ND PBS vs F ND PBS are shown as #p<0.05, ##p<0.01, ###p<0.005 and M HFD PBS vs F HFD PBS are shown as &p<0.05, &&p<0.01, &&&p<0.005, &&&&p<0.0001., Supplementary Figure 3. Gene expression (A) Akt1 and (B) Glut4 gene expression in obese male and female GWAT with and without ADRB3 stimulation. A.U., arbitrary units, N=5-8; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001., Supplementary Figure 4. Flow cytometry assessment of ATMs in lean and obese IWAT SVF. Quantitation of (A) IWAT percent ATMs (B) IWAT CD11c+ ATMs (C) IWAT CD11c-ATMs (D) IWAT dendritic cells (DC) numbers, N=7-12/group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001. , Supplementary Figure 5. Lipidomic assessment of lipid mediators in obese male and female GWAT. (A) Relative hydroxy fatty acids (FAHFA) (B) Phosphatidylserine (PS) (C) Phosphatidylcholine (PC) (D) Lyso-PC (E) Phosphatidylethanolamine (PE) (F) Phosphatidylglycerol (PG) (G) Phosphatidylinositol (PI) content in obese male and female GWAT with and without CL treatment. N=6/group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001., and Curation note: Title of deposit changed from "Supplementary Materials Lipolysis Paper" Dec. 20, 2018 to more closely reflect association with the paper these materials support.
- Discipline:
- Science
-
- Creator:
- Srodawa, Kristy, Cerda, Peter A, Davis Rabosky, Alison R, and Crowe-Riddell, Jenna M
- Description:
- Snake venom research has historically focused on front-fanged species (Viperidae and Elapidae), limiting our knowledge of venom evolution in rear-fanged snakes across their ecologically-diverse phylogeny. Three finger toxins (3FTxs) are a known neurotoxic component in the venoms of some rear-fanged snakes (Colubrinae, Colubridae), but it is unclear how prevalent 3FTxs are both in expression within venom glands and more broadly among colubrine species. Here, we used a transcriptomic approach to characterize the venom expression profiles of four species of colubrine snakes from Neotropics that were dominated by 3FTx expression (in the genera Chironius, Oxybelis, Rhinobothryum, and Spilotes) and reconstructed the gene trees of 3FTxs. Overall, our results highlight the importance of exploring the venoms of understudied species in reconstructing the full evolutionary history of toxins across the tree of life.
- Keyword:
- snake venom, neurotoxin, molecular evolution, gene families, and opisthoglyphous
- Citation to related publication:
- Srodawa, K., Cerda, P.A., Davis Rabosky, A.R., Crowe-Riddell, J.M. Evolution of Three Finger Toxin Genes in Neotropical Colubrine Snakes (Colubridae). Toxins 2023, 15(9), 523; https://doi.org/10.3390/toxins15090523
- Discipline:
- Science
-
- Creator:
- Yue, Min, Kim, Jae Hyun, Evans, Charles R. , Kachman, Maureen, Erb-Downward, John R., D’Souza, Jennifer , Foxman, Betsy, Adar, Sara D. , Curtis, Jeffrey L. , and Stringer, Kathleen A.
- Description:
- This was a small descriptive study to determine whether short chain fatty acids (SCFAs) are detectable in water. It is part of a larger study that assessed the utility of exhaled breath condensate (EBC) as a biofluid for microbiome assays.
- Keyword:
- microbiome, short chain fatty acids, pulmonary, bronchoalveolar lavage fluid, exhaled breath condensate, and water
- Citation to related publication:
- Yue, M., Kim, J. H., Evans, C. R., Kachman, M., Erb-Downward, J. R., D’Souza, J., Foxman, B., Adar, S. D., Curtis, J. L., & Stringer, K. A. (2020). Measurement of Short-Chain Fatty Acids in Respiratory Samples: Keep Your Assay above the Water Line. American Journal of Respiratory and Critical Care Medicine, 202(4), 610–612. https://doi.org/10.1164/rccm.201909-1840LE
- Discipline:
- Science
-
- Creator:
- Carlson, Zachary
- Description:
- Data repository for supplemental data for manuscript. Article and data set are currently under review by publisher. Email for more information.
- Citation to related publication:
- Carlson, Z., Hafner, H., Mulcahy, M., Bullock, K., Zhu, A., Bridges, D., Bernal-Mizrachi, E., & Gregg, B. (2020). Lactational metformin exposure programs offspring white adipose tissue glucose homeostasis and resilience to metabolic stress in a sex-dependent manner. American Journal of Physiology-Endocrinology and Metabolism, 318(5), E600–E612. https://doi.org/10.1152/ajpendo.00473.2019
- Discipline:
- Science
-
- Creator:
- Tronson, Natalie C and Tchessalova, Daria
- Description:
- The main goal of this research was to identify potential molecular pathways that contribute to memory dysregulation and decline that persists long after illness or inflammation. We have previously established a subchronic immune challenge model that results in memory impairments months after the inflammatory challenge. This project aimed to determine whether memory impairments were accompanied by transcriptional dysregulation in memory related brain region (the hippocampus). These data show the differential gene expression as log2fold change (and p-value) in males and females 3 months after immune challenge (Supp Tables 1 and 2); after a subsequent immune challenge (Supp Tables 3 and 4); the differential regulation of genes in males and females (Supp Table 5); genes differentially expressed in the hippocampus of males and females at baseline (Supp Table 6) and the differential regulation of those genes in males and females after immune challenge (Supp Tables 7,8).
- Keyword:
- hippocampus, lipopolysaccharide, differential gene expression, RNA sequencing, neuroimmune, sex differences, learning and memory, and inflammation
- Citation to related publication:
- Tchessalova, D., & Tronson, N. C. (2019). Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge. BioRxiv, 566570. https://doi.org/10.1101/566570
- Discipline:
- Science and Health Sciences
-
- Creator:
- Vani Archaeological Survey
- Description:
- The site of Sakakile (“Place of Beads”) lies 3 km upstream of the village of Sulori, on and around a small promontory on the left bank of the river, formed by a bend in the river and oriented southwest-northeast. This low and level promontory must always have made for a convenient crossing place, and there is now a log bridge running from the right bank of the river to the downstream end of the promontory. South of the promontory is a hill oriented east west from which much of the pottery found on the promontory appears to have eroded. The region around the river crossing is divided topographically into three distinct areas: Kvabiskari (“Place of the Cave/Gorge”), located downstream of the crossing and on the right (north) bank of the river; Sakakile, located on the promontory upstream of the crossing and on the left (south) bank of the river; and Likheti, located upstream of and uphill from Sakakile. Luka Dvalishvili, a resident of Sulori and the owner of the plot of land on the promontory, found a hoard of approximately 700 coins (including a silver Croesid) at Sakakile in the 1970s. At more or less the same time, another local farmer named Generi Paikidze found a bronze axe head here as well. After these chance finds, the Vani excavation team opened up two trenches on northern slope of the hill south of the river, where it slopes down to the low, level promontory of Sakakile. The excavations revealed a mixed assemblage of ceramics eroded from the hill south of the promontory, dating from the 8th-1st century B.C. (Iron Age, Classical, and Hellenistic). The only in-situ pottery assemblage was excavated on the hilltop and dates to the 6th-4th century B.C. Northeast of the hill, in the area where the bronze axe head was supposedly found (dated to the 7th century B.C.), the cobblestone foundation of an apsidal structure was excavated, along with clay tiles and metal implements. The excavation report concludes that occupation on the site began in the 7th-6th century, while the period of most intensive development was the 5th-4th century B.C. We recorded the locations of two trenches from the previous excavations and collected pottery from the eroding northern slope of the hill that forms the southern boundary of the promontory.
- Keyword:
- Iron Age, Late Hellenistic, Hoard, Settlement, and Stray Find
- Citation to related publication:
- In 1984, a chance find of a bronze axe was reported from the area known as Sakakile. In the following year, the Vani excavation team began excavations on the northern slope of the hill south of the river. In 1990 a hoard of 607 coins was found in the village of Sulori. A brief survey of the are was conducted in 2008., Lordkipanidze, O. 1986. Argonavtika da dzveli kolkheti [Argonautics and ancient Colchis]. Tbilisi. pp. 82-83. (In Georgian.), Lordkipanidze, O. D., R. V. Puturidze, D. D. Kacharava, V. A Tolordava, M. S. Pirtskhalava, A. M Chqonia, N. N. Matiashvili, D. V. Akhvlediani, G. Sh. Naridze, and G. A. Inauri. 1987. Raboty Vanskoi ekspeditsii [Work of the Vani archaeological expedition]. Polevye arkheologicheskiye issledovaniya v 1984-85 godakh [Field archaeological investigations in 1984-85]. Tbilisi. pp. 54-55. (In Russian.), Inauri, G. 1990a. Arkheologicheskiye razvedki v s. Sulori [Archaeological explorations in the village of Sulori]. Prichernomorye v VII-V vv. do n. e. Pismennye istochniki i arkheologiya. Materialy V Mezhdunarodnogo simpoziuma po drevnei istorii Prichernomorya. Vani – 1987 [The Black Sea littoral in the 7th-5th centuries B.C. Literary sources and archaeology (Problem of authenticity). Materials of the 5th International symposium dedicated to the problems of the ancient history of the Black Sea littoral. Vani – 1987]. Tbilisi. pp. 276-279. (In Russian.), Inauri, G. 1990b. Le territoire de Vani. Un compte rendu des recherches archéologiques. Le Pont-Euxin vu par les grecs. Sources écrites et archéologique. Symposium de Vani (Colchide), Septembre-Octobre 1987, Otar Lordkipanidze et Pierre Lévêque, ed. Tea Khartchilava et Evelyne Geny. Centre de Recherches d’Histoire Ancienne, Vol. 100. Paris: Annales Littéraires de l’Université de Besançon. pp. 249-252. (In French.), Lébanidzé, L. 1999. Le trésor monétaire de Sulori. La Mer Noire zone de contacts. Actes du VIIe Sympsium de Vani (Colchide) – 26-30.IX.1994. Paris. p. 155-158., Lordkipanidze, Otar. 2002. Dzeli kartuli civilizaciis sataveebtan [The sources of ancient Georgian civilization]. Tbilisi. pp. 206-7. (In Georgian.), and Kharabadze, S. 2008. “Vanis Qveq’nis” Arqeologiuri Ruk’a (dzv.ts. VIII – akh.ts. III ss.). (Archaeological Map of the Vani Land, 8th Century BC – 3rd Century AD). Tsardgenilia Doqt’oris Ak’ademiuri Khariskhis Mosap’oveblad. Saqartvelos T’eqnik’uri Universit’et’i. Tbilisi, 0175, Saqartvelo. Seqt’emberi. p. 20. (In Georgian with an English summary.)
- Discipline:
- Science and Humanities