Index Catalog // Deep Blue Data

Data for "Comparison of Anorectal Function Measured using Wearable Digital Manometry and a High Resolution Manometry System." article (PLOS ONE) PONE-D-20-01826R1

Creator:: Attari, Ali
Description:: Please refer to the "README.txt" for more details., MATLAB R2018a (Mathworks, Natick, MA, USA) was used to process this data., and Excel (Microsoft Office) was used to store survey data on the comfort of both systems and also to provide absolute and relative intraobserver variablities for the DM device.
Keyword:: Digital Manometry
Citation to related publication:: Comparison of anorectal function measured using wearable digital manometry and a high resolution manometry system Attari A, Chey WD, Baker JR, Ashton-Miller JA (2020) Comparison of anorectal function measured using wearable digital manometry and a high resolution manometry system. PLOS ONE 15(9): e0228761. https://doi.org/10.1371/journal.pone.0228761
Discipline:: Engineering, Science, and Health Sciences

Literature search files for A Scoping Review of Strategies to Increase Black Enrollment and Retention in Cancer Clinical Trials

Creator:: Saylor, Kate M., Arring, Noël M., Aduse-Poku, Livingstone, Jiagge, Evelyn, Walker, Eleanor, White-Perkins, Denise, Israel, Barbara, Hinebaugh, Analise, Harb, Rayya, DeWitt, Jillian, Molnar, Maxim, Wilson-Powers, Eliza, and Brush, Barbara L.
Description:: The search data supports a literature review project on Strategies to Increase Black Enrollment and Retention in Cancer Clinical Trials. This dataset includes the reproducible search strategies (txt file) and the exported results of all citations from all databases (txt, ris, and.nbib files). These searches and exported result files contain all citations originating from the database searches that were considered for inclusion.
Keyword:: African American, Cancer, Neoplasm, clinical trials, and Minority Recruitment
Discipline:: Health Sciences

Supporting data and scripts for the paper "Interictal high frequency background activity as a biomarker of epileptogenic tissue"

Creator:: Gliske, Stephen V and Stacey, William C
Description:: This data repository includes the quantitative features of high frequency, intracranial EEG along with all necessary scripts to reproduce the figures of the accompanying manuscript.
Keyword:: high frequency oscillation, HFO, high frequency activity, and epilepsy
Citation to related publication:: (under review)
Discipline:: Science, Engineering, and Health Sciences

Lu-177 DOTATATE Anonymized Patient Datasets: Multi-Time Point Lu-177 Planar Whole Body Scans

Creator:: Dewaraja, Yuni K and Van, Benjamin J
Description:: This publication contains anonymized planar whole body images of two patients. Patient scans were taken at 4 different time points in the week following a therapeutic dose of Lu-177 DOTATATE. Both anterior and posterior views are provided. All images are in DICOM format.
Keyword:: Lu-177, Lutathera, Dosimetry, Radionuclide, and Planar
Discipline:: Health Sciences

Lu-177 DOTATATE Anonymized Patient Datasets: Lu-177 SPECT Projection Data and CT-based Attenuation Coefficient Maps

Creator:: Dewaraja, Yuni, K and Van, Benjamin J
Description:: This publication contains the anonymized SPECT/CT scans of two patients. Patient scans were taken at 4 different time points in the week following a therapeutic dose of Lu-177 DOTATATE. Each of the scans contains 5 subfolders, 3 of which contain SPECT projection data used for reconstructing SPECT images, and 2 contain the linear attenuation coefficient maps for the CT scans that correspond to each patients SPECT projections. All images are in DICOM format.
Keyword:: Lu-177, Dosimetry, Radionuclide, SPECT, and CT
Discipline:: Health Sciences

Action current data for investigating the development and organization of GnRH neuron activity in mice.

Creator:: Dulka, Eden A
Description:: This data is a subset of that originally produced as part of an effort to characterize GnRH neuron activity during prepubertal development in control and PNA mice and investigate the potential influences of sex and PNA treatment on this process (1). It was later used in (2) to further investigate the firing patterns of GnRH neurons in these categories of mice and determine how these patterns might differ based on age and treatment condition. The data files can be opened and examined using Wavemetric's Igor Pro software. Code used to further examine and visualize the data can be found at https://gitlab.com/um-mip/mc-project-code. This research was supported by National Institute of Health/Eunice Kennedy Shriver National Institute of Child Health and Human Development R01 HD34860 and P50 HD28934. (1) Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone (GnRH) neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3941-3953 (2) Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
Keyword:: action potential, Monte Carlo, polycystic ovary syndrome, puberty, and androgen
Citation to related publication:: Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3943-3953. https://dx.doi.org/10.1210%2Fen.2017-00768 and Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
Discipline:: Health Sciences

Analyzing Reviewer Responses to Systematic Review Search Methodology through Open Peer Review

Creator:: Townsend, Whitney A, MacEachern, Mark P, and Song, Jean
Description:: We conducted a search through BioMed Central's 54 medicine and public health journals that provide OPR documentation in order to identify systematic review papers published in 2017. For each article we determined if OPR data, reviewer and author comments, were accessible. If so, we assessed the search methodology and reporting quality of the search process with a grading rubric based on PRISMA and PRESS standards, and then mined peer reviewer comments for references to the search methodology.
Keyword:: Systematic Reviews, Peer Review, Open Peer Review, Methodology, Research Methods, and Reporting
Discipline:: Health Sciences

Lu-177 DOTATATE Anonymized Patient Datasets: Lu-177 SPECT Time Integrated Activity Maps

Creator:: Dewaraja, Yuni K and Van, Benjamin J
Description:: This publication contains anonymized time integrated activity maps for two patients. SPECT/CT scans were taken at 4 different time points in the week following a therapeutic dose of Lu-177 DOTATATE and combined into a single activity map for each patient. All images are in DICOM format.
Keyword:: Lu-177, Dosimetry, Radionuclide, SPECT, and CT
Discipline:: Health Sciences

Lu-177 DOTATATE Anonymized Patient Datasets: Pre-therapy Diagnostic Images

Creator:: Dewaraja, Yuni K and Van, Benjamin J
Description:: This publication contains anonymized diagnostic imaging scans of two patients. The images provided are pre-therapy scans used by clinicians for diagnosis and for selecting patients for treatment with Lu-177 DOTATATE. Multiple imaging modalities are present including diagnostic CT, MRI, and Ga68 PET, depending on the selected patient. All images are in DICOM format.
Keyword:: Lu-177, Lutathera, Dosimetry, Radionuclide, CT, MRI, and PET
Discipline:: Health Sciences

Literature search files for Firearm violence among LGBTQ+ communities: A scoping review and future directions

Creator:: Saylor, Kate M., King, Wesley M., and Gamarel, Kristi E.
Description:: The search data supports a literature review project on Firearm violence among LGBTQ+ communities. The data included in the dataset are the reproducible search strategies (txt file) and the exported results of all citations from all databases (txt, ris, and.nbib files). These searches and exported result files contain all citations originating from the database searches that were considered for inclusion.
Keyword:: LGBTQ, Transgender, Firearms
Discipline:: Health Sciences

Data for "Comparison of Anorectal Function Measured using Wearable Digital Manometry and a High Resolution Manometry System." article (PLOS ONE) PONE-D-20-01826R1

Literature search files for A Scoping Review of Strategies to Increase Black Enrollment and Retention in Cancer Clinical Trials

Supporting data and scripts for the paper "Interictal high frequency background activity as a biomarker of epileptogenic tissue"

Lu-177 DOTATATE Anonymized Patient Datasets: Multi-Time Point Lu-177 Planar Whole Body Scans

Lu-177 DOTATATE Anonymized Patient Datasets: Lu-177 SPECT Projection Data and CT-based Attenuation Coefficient Maps

Action current data for investigating the development and organization of GnRH neuron activity in mice.

Analyzing Reviewer Responses to Systematic Review Search Methodology through Open Peer Review

Lu-177 DOTATATE Anonymized Patient Datasets: Lu-177 SPECT Time Integrated Activity Maps

Lu-177 DOTATATE Anonymized Patient Datasets: Pre-therapy Diagnostic Images

Literature search files for Firearm violence among LGBTQ+ communities: A scoping review and future directions

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