Index Catalog // Deep Blue Data

The Impact of COVID-19 on a College Freshman Sample Reveals Genetic and Nongenetic Forms of Susceptibility and Resilience to Stress

Creator:: Turner, Cortney, Khalil, Huzefa, Murphy-Weinberg, Virginia, Hagenauer, Megan, Gates, Linda, Tang, Yu, Weinberg, Lauren, Grysko, Robert, Floran-Garduno, Leonor, Dokas, Thomas, Samaniego, Catherine, Zhao, Zhuo, Fang, Yu, Sen, Srijan, Lopez, Juan, Watson Jr., Stanley, and Akil, Huda
Description:: This research was conducted on freshmen at the University of Michigan. Activity and sleep data from Fitbit is included along with a data dictionary.
Keyword:: Mood Disorder, Polygenic Risk Score, College Freshmen, Resilience, and Susceptibility
Citation to related publication:: Turner, C., Khalil, H., Murphy-Weinberg, V., Hagenauer, M., Gates, L., Tang, Y., Weinberg, L., Grysko, R., Floran, L., Dokas, T., Samaniego, C., Zhao, J., Fang, Y., Sen, S., Lopez, J., Watson Jr, S., Akil, H.: Stress, Genetics and Mood: Impact of COVID-19 on a College Freshman Sample, submitted to PNAS.
Discipline:: Health Sciences

Data for a Mobile Obstetric Referral Emergency System (MORES) to reduce delays in rural Liberia

Creator:: Lee, HaEun, Lori, Jody R, Sieka, Joseph, Reynolds, Christopher W, and Lockhart, Nancy
Description:: Mobile obstetric emergency system (MORES) is a promising intervention to enhance communication between rural health facilities and hospitals and to improve maternal and newborn outcomes.
Keyword:: Obstetric referral, WhatsApp, Mobile health, Referral system, and International Heath
Citation to related publication:: Lee, H., Dahn B., Sieka, J., Nyanplu, A., Reynolds, C., Edson, C., Lockhart, N., & Lori, J. The use of a mobile obstetric emergency system (MORES) to improve obstetric referrals in Bong County, Liberia: A pre/post study. International Journal of Gynecology & Obstetrics. (2023) http://doi.org/10.1002/ijgo.15175
Discipline:: Health Sciences and International Studies

pottery (Mali mp4)

Creator:: Heath, Jeffrey
Description:: Documentary videos of pottery making, notably a four-part documentary of one potter's work. Credits are at the end of videos. Additional documentaries from Mali may be added later.
Keyword:: pottery
Discipline:: Health Sciences

ABC Baby - Data for Developmental Trajectories of Eating Behaviors and Cross-Lagged Associations with Weight Across Infancy

Creator:: Lumeng, Julie C
Description:: Healthy full-term infants were enrolled in a longitudinal study designed to examine the development of infant eating behavior. Infant weight and length was measured, mothers completed questionnaires regarding infant eating behaviors, and infants were weighed and length measured at ages 1, 2, 4, 6 and 10 months. Trajectories of eating behaviors were identified using latent class growth modeling and bivariate analyses examined associations of infant eating behavior trajectory membership with infant and maternal characteristics. Cross-lagged analyses examined associations between BEBQ subscales and infant weight-for-length z-score.
Keyword:: infant, eating, weight gain, and feeding
Citation to related publication:: Harlan McCaffery, Julie Zaituna, Sophie Busch, Niko Kaciroti, Alison L. Miller, Julie C. Lumeng, Katherine L. Rosenblum, Ashley Gearhardt, Megan H. Pesch, Developmental trajectories of eating behaviors and cross-lagged associations with weight across infancy, Appetite, 2023, 106978
Discipline:: Health Sciences

NIH/NCI Co-Clinical Imaging Research Resources Program (CIRP) Diffusion Weighted Imaging Phantom Round Robin

Creator:: Chenevert, Thomas L., Malyarenko, Dariya, Amouzandeh, Ghoncheh, Pickup, Stephen, Zhou, Rong, Manning, Henry Charles, Gamon, Seth T., Shoghi, Kooresh I., Quirk, James D., Sriram, Renuka, Larson, Peder, Lewis, Mickael T., Pautler, Robia G., Kinahan, Paul E., and Muzi, Mark
Description:: Goals of this work quantify repeatability and reproducibility across multiple NIH/NCI Co-Clinical Imaging Research Resources Program (CIRP) preclinical MRI systems in performing diffusion measurement using a standardized acquisition protocol on a shared phantom containing temperature-controlled medium of known diffusivity. To achieve these goals, the CIRP Image Acquisition Data Processing (IADP) working group (WG) performed a round-robin study of an ice water-based DWI phantom using a detailed phantom preparation procedure and standardized DWI acquisition protocol, with both site- and core-lab generated ADC measurements derived from shared datasets.
Keyword:: diffusion MRI, pre-clinical MRI, apparent diffusion coefficient (ADC), repeatability, reproducibility, and accuracy
Citation to related publication:: Tomography 2023, 9, 375–386. https://doi.org/10.3390/tomography9010030
Discipline:: Health Sciences

ABC Baby - Data for Capacity for Regulation of Energy Intake in Response to More Frequent Feedings

Creator:: Lumeng, Julie C
Description:: Healthy full-term infants were enrolled in a longitudinal study designed to examine the development of infant eating behavior. Infant weight and length was measured, mothers completed questionnaires regarding infant eating behaviors, and infant capacity for regulation of energy intake was evaluated by comparing intake between two days: one with feedings given on demand and one with feedings offered hourly. The infant's ability to downregulate intake in response to more frequent feedings was calculated.
Keyword:: infant, eating, weight gain, feeding, and energy regulation
Citation to related publication:: Reynolds, L. A., McCaffery, H., Appugliese, D., Kaciroti, N. A., Miller, A. L., Rosenblum, K. L., ... & Lumeng, J. C. (2023). Capacity for Regulation of Energy Intake in Infancy. JAMA pediatrics, 177(6), 590-598.
Discipline:: Health Sciences

ABC Baby - Data for Characterization of a Vigorous sucking style in early infancy and its predictive value for weight gain and eating behaviors at 12 months

Creator:: Lumeng, Julie C
Description:: Healthy full-term infants were enrolled in a longitudinal study designed to examine the development of infant eating behavior. Infant weight and length was measured, mothers completed questionnaires regarding infant eating behaviors, and infant sucking behavior was quantified using the NFANT device during a typical feeding. The predictive value of the NFANT-generated sucking metrics for infant weight gain was evaluated.
Keyword:: infant, eating, weight gain, and sucking
Citation to related publication:: Feldman, Keith, Katharine Asta, Ashley N. Gearhardt, Julie M. Sturza, Danielle Appugliese, Alison L. Miller, Katherine Rosenblum, Kai Ling Kong, Amanda K. Crandall, and Julie C. Lumeng. "Characterization of a Vigorous sucking style in early infancy and its predictive value for weight gain and eating behaviors at 12 months." Appetite (2023): 106525.
Discipline:: Health Sciences

Engineered immunologic niche monitors checkpoint blockade response and probes mechanisms of resistance

Creator:: Raghani, Ravi M, Urie, Russell R, and Shea, Lonnie D
Description:: The IN were sampled during and after ICB and sequenced to identify gene expression signatures that correlated with sensitivity or resistance. We also analyzed gene expression at the IN prior to ICB treatment to identify markers predicting therapeutic response. Longitudinally interrogating an IN, to monitor changes associated with ICB response, presents a new opportunity to personalize care and investigate mechanisms underlying treatment resistance.
Keyword:: Immunotherapy resistance, Biomaterials, Metastasis, Checkpoint blockade, and Therapy monitoring
Discipline:: Engineering and Health Sciences

Head and Neck Cancer University of Michigan SPORE clinical outcomes analytic dataset

Creator:: Bellile, Emily L, Taylor, Jeremy MG, and Wolf, Gregory T
Description:: The University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) included an epidemiology project that approached every previously untreated adult head and neck squamous carcinoma (HNSCC) patient evaluated in the multidisciplinary Head and Neck Oncology Program of the University of Michigan (UM; Ann Arbor, MI) Comprehensive Cancer Center for participation in our longitudinal epidemiology study. This analytic dataset includes the most commonly requested covariates and outcome variables for survival analysis of this cohort of HNSCC patients. Data cleaning and creation of this analysis dataset was performed with SAS software v 9.3 (Carey,NC) by a biostatistician supporting multiple projects in the University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) and is available in RedCap for UM investigators to join with discipline specific data collected on the same cohort through a de-identified ID link.
Keyword:: Head and Neck Cancer, HNSCC, Squamous Cell Cancer, Epidemiology, Head and Neck Specialized Program of Research Excellence (SPORE). , Cancer, Prognosis, and Survival Analysis
Citation to related publication:: Cigarette use, comorbidities, and prognosis in a prospective head and neck squamous cell carcinoma population. Peterson LA, Bellile EL, Wolf GT, Virani S, Shuman AG, Taylor JM, Rozek LS; University of Michigan Head and Neck Specialized Program of Research Excellence Program. Head Neck. 2016 Dec;38(12):1810-1820. doi: 10.1002/hed.24515. Epub 2016 Jul 19. PMID: 27432208. , Development and Assessment of a Model for Predicting Individualized Outcomes in Patients With Oropharyngeal Cancer. Beesley LJ, Shuman AG, Mierzwa ML, Bellile EL, Rosen BS, Casper KA, Ibrahim M, Dermody SM, Wolf GT, Chinn SB, Spector ME, Baatenburg de Jong RJ, Dronkers EAC, Taylor JMG. JAMA Netw Open. 2021 Aug 2;4(8):e2120055. doi: 10.1001/jamanetworkopen.2021.20055. PMID: 34369988., Amlani, L; Bellile, E; Spector, M; Smith, J; Brenner, C; Rozek, L; Nguyen, A; Zarins, K; Thomas, D; McHugh, J; Taylor, J; Wolf, GT. Expression of p53 and prognosis in patients with head and neck squamous cell carcinoma (HNSCC); Int J Cancer Clin Res 2019, 6:122. DOI: 10.23937/2378-3419/1410122., and Spector ME, Bellile E, Amlani L, Zarins K, Smith J, Brenner JC, Rozek L, Nguyen A, Thomas D, McHugh JB, Taylor JMG, Wolf GT; University of Michigan Head and Neck SPORE Program. Prognostic Value of Tumor-Infiltrating Lymphocytes in Head and Neck Squamous Cell Carcinoma. JAMA Otolaryngol Head Neck Surg. 2019 Nov 1;145(11):1012-1019. doi: 10.1001/jamaoto.2019.2427. PMID: 31486841; PMCID: PMC6735419.
Discipline:: Science and Health Sciences

Data from "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications"

Creator:: Walker, Logan A, Li, Ye, McGlothlin, Maggie, and Cai, Dawen
Description:: These are datasets released from our manuscript "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications". Included in this data release are: `noise16.tif`: a file containing background noise collected from a 1000-frame acquisition of a ORCA-Fusion camera; `noise8.tif`: a file containing the 16-bit data collective above converted into a 8-bit form; `brainbow.tif`: This is a mouse Brainbow image originally published and described in Roossien, et al. Bioinformatics 2019; `bead.tif`: This is a 3D image of 100nm Invitrogen TetraSpeck fluorescent microspheres imaged in a blue channel using a custom microscope; `fly.tif`: This is a 3D image of a fly Bitbow brain collected as described in Li, et al. Front. Neural Circuits 2021; and `neurite.tif`: This is a 3D image of DiD-labeled mouse V1 tissue, collected using a custom microscope.
Keyword:: neuroscience, microscopy, and Bitbow
Discipline:: Health Sciences

The Impact of COVID-19 on a College Freshman Sample Reveals Genetic and Nongenetic Forms of Susceptibility and Resilience to Stress

Data for a Mobile Obstetric Referral Emergency System (MORES) to reduce delays in rural Liberia

pottery (Mali mp4)

ABC Baby - Data for Developmental Trajectories of Eating Behaviors and Cross-Lagged Associations with Weight Across Infancy

NIH/NCI Co-Clinical Imaging Research Resources Program (CIRP) Diffusion Weighted Imaging Phantom Round Robin

ABC Baby - Data for Capacity for Regulation of Energy Intake in Response to More Frequent Feedings

ABC Baby - Data for Characterization of a Vigorous sucking style in early infancy and its predictive value for weight gain and eating behaviors at 12 months

Engineered immunologic niche monitors checkpoint blockade response and probes mechanisms of resistance

Head and Neck Cancer University of Michigan SPORE clinical outcomes analytic dataset

Data from "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications"

Limit your search

Resource type

Creator

Discipline

Language

Search Results

Search Constraints

Search Results

Limit your search