This research is from the last time step of a 12 hour simulation. The files that are attached with this simulation require the raw data from (doi:10.7302/fwq2-ey41). The python files generate various plots for the paper.
Trung, H.-S., Liemohn, M. W., & Ilie, R. (2019). Steady State Characteristics of the Terrestrial Geopauses. Journal of Geophysical Research: Space Physics, 124(7), 5070–5081. https://doi.org/10.1029/2019JA026636
This database contains six datasets intended to aid in the conception, training, demonstration, evaluation, and comparison of reduced-complexity models for fluid mechanics. The six datasets are: large-eddy-simulation data for a turbulent jet, direct-numerical-simulation data for a zero-pressure-gradient turbulent boundary layer, particle-image-velocimetry data for the same boundary layer, direct-numerical-simulation data for laminar stationary and pitching flat-plate airfoils, particle-image-velocimetry and force data for an airfoil encountering a gust, and large-eddy-simulation data for the separated, turbulent flow over an airfoil.
All data are stored within hdf5 files, and each dataset additionally contains a README file and a Matlab script showing how the data can be read and manipulated. Since all datafiles use the hdf5 format, they can alternatively be read within virtually any other programing environment. An example.zip file included for each dataset provides an entry point for users.
The database is an initiative of the AIAA Discussion Group on Reduced-Complexity Modeling and is detailed in the paper listed below. For each dataset, the paper introduces the flow setup and computational or experimental methods, describes the available data, and provide an example of how these data can be used for reduced-complexity modeling. All users should cite this paper as well as appropriate primary sources contained therein.
Towne, A., Dawson, S., Brès, G. A., Lozano-Durán, A., Saxton-Fox, T., Parthasarthy, A., Biler, H., Jones, A. R., Yeh, C.-A., Patel, H., Taira, K. (2022). A database for reduced-complexity modeling of fluid flows. AIAA Journal 61(7): 2867-2892.
This merged Global Precipitation Measurement (GPM) Core Observatory and atmospheric river dataset contains gridded Goddard Profiling (GPROF) algorithm v7 precipitation rates (Kummerow et al. 2015; Randel et al. 2020), Remote Sensing Systems (RSS) atmospheric water vapor (Meissner et al. 2012), and Mattingly et al. (2018) atmospheric rivers in the North Atlantic and North Pacific oceans. The GPROF precipitation rates and RSS atmospheric water vapor are both derived using the GPM Microwave Imager (GMI) brightness temperature observations. The atmospheric river data is derived from MERRA-2 (Modern-Era Retrospective analysis for Research and Applications Reanalysis, Version 2) integrated water vapor transport (Mattingly et al. 2018).
, The data coverage starts at the beginning of the GPM data record (GPM launched in Feb 2014 and the processed data coverage starts in May 2014). Subsequent years will be added throughout the lifetime of the project.
, The monthly files are compressed into year and basin: either the North Atlantic (NA) or the North Pacific (NP) (e.g., NA_2014) and zipped. The files have the basin name indicated and are by year and month (e.g., gridded_atlantic_201405.nc). The files produced are in NetCDF format ( https://www.unidata.ucar.edu/software/netcdf/) and conform to all standard NetCDF metadata conventions ( http://cfconventions.org/cf-conventions/cf-conventions.html), and Kummerow, C. D., Randel, D. L., Kulie, M., Wang, N. Y., Ferraro, R., Joseph Munchak, S., & Petkovic, V. (2015). The evolution of the Goddard profiling algorithm to a fully parametric scheme. Journal of atmospheric and oceanic technology, 32(12), 2265-2280. https://doi.org/10.1175/JTECH-D-15-0039.1
Mattingly, K. S., Mote, T. L., & Fettweis, X. (2018). Atmospheric river impacts on Greenland Ice Sheet surface mass balance. Journal of Geophysical Research: Atmospheres, 123(16), 8538-8560. https://doi.org/10.1029/2018JD028714
Meissner, T., F. J. Wentz, and D. Draper, 2012: GMI Calibration Algorithm and Analysis Theoretical Basis Document, Remote Sensing Systems, Santa Rosa, CA, report number 041912, 124 pp.
Randel, D. L., Kummerow, C. D., & Ringerud, S. (2020). The Goddard Profiling (GPROF) precipitation retrieval algorithm. Satellite Precipitation Measurement: Volume 1, 141-152. https://doi.org/10.1007/978-3-030-24568-9_8
Research data supporting, 'Flexible Synthesis Scheme and Application of AuNP Surface-Conjugatable Meta-Iodobenzylguanidine Derivatives for Enhanced Cellular Internalization', 10.1021/acsmaterialslett.3c00781, AuNP = Au nanoparticle.
In 10.1021/acsmaterialslett.3c00781, we report the synthesis and application of two metaiodobenzylguanidine (MIBG) derivatives decorated on the surface of AuNPs at high molar ratios; greatly enhanced cellular uptake is observed across neuroblastoma (NB), HeLa, and HEK cell lines.
This dataset consists of synthetic NMR and mass spec data for the small molecules and their intermediates, dark-field microscopy data, inductively-coupled plasma mass spectrometry data, and raw data for characterizing the AuNPs (TEM, DLS, zeta potential).
Flexible Synthesis Scheme and Application of AuNP Surface-Conjugatable Metaiodobenzylguanidine Derivatives for Enhanced Cellular Internalization Natalie S. Potter, Alan McLean, Evan C. Bornowski, Thomas Hopkins, Jingyi Luo, John P. Wolfe, Wei Qian, and Raoul Kopelman ACS Materials Letters Article ASAP DOI: 10.1021/acsmaterialslett.3c00781
Data consists largely of UV-VIs spectra, both raw and analyzed, that were used to calibrate the relevant sensor. A more detailed description of individual files' contents can be found in the ReadMe word document.
images of plants, in nature or specimens, of the family Molluginaceae. The common species in Central Mali are Mollugo nudicaulis (from which a spontaneous "soap" can be made) and Glinus lotoides. See also Aizoaceae (Trianthema, Zaleya), Gisekiaceae (Gisekia), and Limeaceae (Limeus). These families have been combined in various ways in previous classifications.
Bacteria live in a broad range of environmental temperatures that require adaptations of their RNA sequences to maintain function. Riboswitches are regulatory RNAs that change conformation upon binding of typical metabolite ligands to control bacterial gene expression. The paradigmatic small class-I preQ1 riboswitches from the mesophile Bacillus subtilis (Bsu) and the thermophile Thermoanaerobacter tengcongensis (Tte) adopt similar pseudoknot structures when bound to preQ1. Here, we use single-molecule detected chemical denaturation by urea to compare the thermodynamic and kinetic folding properties of the two riboswitches, and the urea-countering effects of trimethylamine N-oxide (TMAO). This data includes the experimental findings and associated analyses detailed in the research article titled "Single-molecule FRET observes opposing effects of urea and TMAO on structurally similar meso- and thermophilic riboswitch RNAs". The data consists of multiple zip files, each representing an experiment that corresponds to the key results in the publication. Each experiment includes movies, qualifying smFRET trajectories, and analysis files related to various conditions within that experimental group.
These images of plants, in nature or as fresh or dried specimens, were made in conjunction with research on languages of the Dogon and Bozo families, along with the isolated language Bangime, in Central Mali between 2006 and 2023. (See also the work "Dogon and Bangime flora terms from central Mali (2023)" in Deep Blue Data: https://doi.org/10.7302/34vf-jk03. The late Pierre Poilecot of CNRS (Montpellier, France) provided invaluable help in the early days. However, I am responsible for the determinations (including taxonomic updates), and I am not a professional botanist. The images range from poor to excellent technical quality. They may be of use for two purposes: a) acquiring a basic knowledge of the flora of the area, for newcomers; b) as vouchers for the determinations in my lexical spreadsheets on the various languages. While the main burst of taxonomic changes due to molecular studies has probably leveled off as of 2023, some revisions at all levels (family, genus, species) will occur over time. The African Flowering Plant Database at url https://africanplantdatabase.ch is especially useful for updates/synonymies at the species level, but tends to lag behind on revisions at the family level., Each "work" for flowering plants in this collection has the title "Mali flora images X" where X is the name of a botanical family. Users who enter at the collection level should search by family (from Acanthacaceae to Zypɣophyllaceae). Large families Poaceae, Malvaceae, and Fabaceae are divided into two or more works, but they will all show up in search results for the family. There is one work for non-flowering plants with title "Mali aa fern fungus lichen images"., Within each work, the individual images have file names like these:
fl_Amaranthaceae_Celosia_trigyna_Beni_10_2011_fl_50035_JH.JPG
fl_Lamiaceae_Hoslundia_opposita_Barato_09_2021_piripirinaw_03_fol_fr_JH.JPG
fl_Zygophyllaceae_Tribulus_terrestris_Sevare_patch_50672_JH.tif
fl_Fabaceae_Caesalpinioideae_mimosoid_Vachellia_(or_Acacia)_nilotica fuwON_1_Barato_09_2021_entire_JH.JPG
They begin with "fl" for flora, the family, the genus, and the species epithet. For Fabaceae, the subfamily and if relevant "mimosoid" (part of subfamily Caesalpinioideae) precedes the genus. These items are separated by underlines (important to note if searching for a genus-species binomial). The remaining items were mostly for my own use. They may include a location (on which see the following paragraph), the date, a crude representation (without IPA symbols or diacritics) of a native name, a five-digit code for my use, a photo number like "2" for the same plant, "JH" to indicate that the image was taken by me or by a member of a project I directed, jpg or occasionally tif for forrmat, and an indicator of what part of the plant is shown: entire, bark, fl[ower], fol[iage], lf (leaf), fr[uit], tr[unk], br[anch], th[orn].
File names can be quite long especially for Fabaceae because of the subfamily names. In lists of files under such works, the file name may be shown in abbreviated form (with ellipsis ...) so that the genus and species terms may not be visible. The only way to find files for a particular species is by searching for that species. Alternatively, all of the files in a work can be downloaded in zip form and users can then see complete file names. The readme's for each work list the included species. , Most of the locations indicated are in the Dogon-speaking area, which includes cliffs, high plateaus, inselbergs, sandy plains, seasonal rivers, and small ponds. Dogon locations include Beni, Tupere, Ségué, Bendiely, Dianwely, Anda, Walo, and Tongo Tongo, among others. The inselbergs and adjoining plains of the montane Songhay are represented mainly by Hombori and Kikara. The Niger and Bani river zone from Mopti to Segou, a mainly Bozo-speaking area that features seasonal floodplains, is represented mainly by Djenne, Barato, and Kolongo. , and Some of these plants are featured in documentary-style videos. There are two collections of such videos from Mali in Deep Blue Data:
Mali documentary videos from 2023 - https://doi.org/10.7302/4851-2c52
Central Mali documentary videos - https://doi.org/10.7302/4jg9-j095
Additional flora-related videos from Mali may be archived at a later date. Some fauna images may also be archived at a later date.
The various Mali collections (flora, videos) will be paralleled in time by comparable collections for southwestern Burkina Faso, and small collections for north-central Côte d'Ivoire, all in Deep Blue Data.
This is a collection of photos of villages located primarily in Central Mali. These photos are primarily of Dogon villages, but there are village photos of other nearby ethnicities, including Bangande, Fulbe, Tuareg, Songay, and Bozo.These photos were taken to document the villages Professor Jeffrey Heath worked in and people he worked with while documenting languages throughout the region. For interactive geographical maps involving these villages see: http://dogonlanguages.org/geography.cfm.
This dataset includes a catalog of events for the Prague, Oklahoma earthquake sequence with uncalibrated and calibrated relative magnitudes that are a product of the relative magnitude method (see Gable & Huang, submitted).
Original earthquake catalog records for the combined catalog used in this analysis and the events used in the relative magnitude to absolute magnitude calibration process are a product of the following studies:
Cochran, E.S., et al. (2020). Activation of optimally and unfavourably oriented faults in a uniform local stress field during the 2011 Prague, Oklahoma, sequence. Geophysical Journal International, 222(1), pp. 153-168. https://doi.org/10.1093/gji/ggaa153
Skoumal, R.J., M.R. Brudzinski, B.S. Currie, & R. Ries (2020). Temporal patterns of induced seismicity in Oklahoma revealed from multi-station template matching. Journal of Seismology, 24, pp. 921-935. https://doi.org/10.1007/s10950-019-09864-9
Sumy, D.F., et al. (2014). Observations of static Coulomb stress triggering of the November 2011 M5.7 Oklahoma earthquake sequence. Journal of Geophysical Research: Solid Earth, 119(3), 1904-1923. https://doi.org/10.1785/0120210115
images of plants in nature or specimens, family Anacardiaceae. Includes Anacardium (cashew) and Mangifera (mango). Genus Ozoroa was included in Heeria in the past.
images of plants in nature or specimens, family Annonaceae. Annona reticulata and A. squamosa are planted in courtyards for their fruits (sweetsop). Xylopia is an imported spice ("grains of Selim").
images of plants, in nature or specimens, of family Bixaceae. Cochlospermum tinctorium was photographed in an ethnomedicinal garden; it has not been observed in the wild in the zone covered.
images of flora from nature or of specimens, family Brassicaceae (formerly Cruciferae). Most of the native plants of this family are Saharan, if Cleomaceae is treated as a separate family as in this collection.
images of flora from nature or of specimens, family Burseraceae. Commiphora africana produces a gum (bdellium) known as albarkante in Mali and widely burned as incense.
images of plants, in nature or specimens, of family Fabaceae (legumes), subfamily Caesalpinioideae, excluding mimosoids (e.g. acacias). The genus Cassia has been divided into Cassia (sensu stricto), Chamaecrista, and Senna.
images of plants, in nature or specimens, of family Fabaceae (legumes), subfamily Caesalpinioideae, mimosoid clade, former Acacia spp. (sensu lato). The acacias were split in 2011 into several genera: African acacias were assigned to Faidherbia, Senegalia, and Vachellia. Acacia (sensu stricto) was delimited to Australia (due to strong-arming from the Australian timber industry), even though the type species was Acacia (now Vachellia) nilotica. Acacia ehrenbergiana was renamed Vachellia flava, in other cases the species epithet did not change when the genus changed. Many botanists continue to use Acacia for the entire complex, others recognize Faidherbia but retain Acacia for Senegalia and Vachellia. By strict botanical rules, Acacia should be limited to "Vachellia".
images of plants, in nature or specimens, of plants of the family Hernandiaceae. Genus Gyrocarpus, the only one present in the zone, is sometimes placed in its own family Gyrocarpaceae.
images of plants, in nature or specimens, of family Hydrocharitaceae. Included is genus Najas, which is sometimes elevated to family status (Najadaceae). Najas spp. are difficult for a nonspecialist to distinguish from each other and from Lagarosiphon. Ottelia is easily recognized.
images of plants, in nature or specimens, of family Lami.aceae (synonym Labiatae). Leucas and Leonotis genera overlap and may be merged. Gmelina and Vitex have been transferreed to Lamiaceae from Verbenaceae but are still listed as Verbenaceae in some websites.
images of plants, in nature or specimens, of family Lauraceae. Cassytha is a native plant. Laurus nobilis (a kind of bay leaf) is an imported dried leaf used as a spice especially in Songhay cuisine.
images of plants, in nature or specimens, of family Limeaceae. This family has recently been separated from Molluginaceae. Only Limeum pterocarpum is widespread in Central Mali.
images of plants, in nature or specimens, of family Loranthaceae (mistletoe). Englerina has yellow flowers. Tapinanthus spp. have red flowers and are difficult to distinguish from each other. Tapinanthus bangwensis is the common species in Central Mali.
images of plants, in nature and specimens, of family Lythraceae. Lawsonia is the henna bush, planted in towns. Henna is a dark pigment used in body decorations, especially hands and feet.
images of plants, in nature or specimens, of family Malvaceae, genera I to Z. Malvaceae (sensu lato) now includes former Bombacaceae (Adansonia, Ceiba, Bombax), Tiliaceae (Grewia, Corchorus, Triumfetta), and Sterculiaceae (Cola, Sterculia, Waltheria).
images of plants, in nature or specimens, of family Malvaceae, genus Hibiscus. H. sabdariffa (roselle) is cultivated. H. esculentus (okra) is not widely cultivated in this zone. Of native species, H. micranthus can be confused with H. pseudohirtus.
images of plants, in nature or specimens, of the family Zingiberaceae. In Central Mali, the relevant species are Zingiber (ginger) and melegueta pepper (Aframomum). Ginger is cultivated or imported, and melegueta pepper is imported and sold as a spice or medicine.
images of flora from nature or of specimens, family Cleomaceae. This family was previously part of Capparaceae, and is now sometimes included in Brassicaceae.
images of plants, in nature or specimens, of family Moringaceae. The local species is Moringa oleracea, planted here and there in villages chiefly for the foliage which is made into a sauce.
images of plants, in nature or specimens, of family Nyctaginaceae. The genus Boerhavia has been revised since our collecting began and it is best to consider all of these images to be "Boerhavia sp.", though mostly B. coccinea.
images of plants, in nature or specimens, of family Portulacaceae (purslanes). Portulaca oleracea, P. quadrifida, and P. foliosa are widespread weeds, P. grandiflora is an ornamental in courtyards. Specimens deteriorate quickly. Except when flowering, P. oleracea can be confused with Trianthema portulacastrum (Aizoaceae).
images of plants, in nature or specimens, of family Phyllanthaceae. Phyllanthus spp. and Flueggea occur wild in Central Mali. This family was formerly included in Euphorbiaceae.
images of plants, in nature or specimens, of family Nymphaeaceae (true water lilies, compare Menyanthaceae). Nymphaea lotus is the largest species and has distinctive dentate leaf margins. N. maculata and N. micrantha are smaller; N. maculata has roughly circular leaves, while N. micrantha has more oval-shaped leaves and usually a tuft of hairs on top of the leaf next to the stem axis.
images of plants, in nature or specimens, of the family Meliaceae. Azadirachta (neem tree) is nonnative but is planted everywhere in Malian villages and cities. Khaya ("caïlcédrat") was formerly the boulevard tree of preference in cities in the colonial period; it is native to West Africa but occurs in the wild mainly farther south.
images of plants, in nature or specimens, of family Onagraceae. The local genus is Ludwigia. L. hyssopifolia and L. erecta are the two species known in Central Mali away from the main rivers (where other spp. are also found).
images of plants, in nature or specimens, of family Turneraceae. Recently the family Turneraceae including Tricliceras was merged into Passifloraceae in one botanical system, but some botanists reject this. Tricliceras is a weed in villages.
images of plants, in nature or specimens, of family Myrtaceae. Syzygium is the local native species and is featured here. Syzygium is rare in Central Mali but was found on the summit of Gandamiya mountain near Douentza. It is common farther south. The family also includes guava, clove, and eucalyptus.
images of plants, in nature or specimens, of family Verbenaceae. This family has been sharply reduced by the transfer of many genera to Lamiaceae (Vitex, Gmelina, Clerodendrum).
images of plants, in nature or specimens, of family Orobanchaceae. The local species is Striga hermonthica, a root parasite of millet and other crop plants. The family (like Plantaginaceae) was recently separated from Scrophulariaceae, but family-level taxonomy remains controversial.
images of plants, in nature or specimens, of family Malphighiaceae. The family is represented in rocky areas of Central Mali by Acridocarpus monodii, which is endemic to Mali and has become rare (and threatened).
images of plants in nature or specimens, family Amaranthaceae. The ex-Chenopodiaceae are listed as Amaranthaceae_Chenopodioideae. Our specimens of the cultivated amaranth (a sauce vegetable) are listed as Amaranthus_cf._dubius/hybridus.
images of flora from nature or of specimens, family Cucurbitaceae . There are some difficulties involving determinations of wild melons with protrusions (horns), Cucumis pustulatus/metuliferus/prophetarum. Cultivated spp. are Lagenaria (gourd, calabash), Citrullus lanatus (watermelon), and Cucurbita (squash/pumpkin).
Mobile obstetric emergency system (MORES) is a promising intervention to enhance communication between rural health facilities and hospitals and to improve maternal and newborn outcomes.
Lee, H., Dahn B., Sieka, J., Nyanplu, A., Reynolds, C., Edson, C., Lockhart, N., & Lori, J. The use of a mobile obstetric emergency system (MORES) to improve obstetric referrals in Bong County, Liberia: A pre/post study. International Journal of Gynecology & Obstetrics. (2023) http://doi.org/10.1002/ijgo.15175
images of plants, in nature or specimens, of family Fabaceae, subfamily Faboideae, genera T to Z. Vigna unguiculata is cultivated cowpea (the local "beans"). Vigna subterranea (ex Vouandzeia) is cultivated groundnut (resembles peanut but harder).
images of plants, in nature or specimens, of family Plantaginaceae (sometimes called Veronicaceae). This family was recently separated from Scrophulariaceae (sensu lato), and taxonomy of these families remains unstable. Scoparia is an important medicinal plant.