These are datasets released from our manuscript "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications".
Included in this data release are: `noise16.tif`: a file containing background noise collected from a 1000-frame acquisition of a ORCA-Fusion camera; `noise8.tif`: a file containing the 16-bit data collective above converted into a 8-bit form; `brainbow.tif`: This is a mouse Brainbow image originally published and described in Roossien, et al. Bioinformatics 2019; `bead.tif`: This is a 3D image of 100nm Invitrogen TetraSpeck fluorescent microspheres imaged in a blue channel using a custom microscope; `fly.tif`: This is a 3D image of a fly Bitbow brain collected as described in Li, et al. Front. Neural Circuits 2021; and `neurite.tif`: This is a 3D image of DiD-labeled mouse V1 tissue, collected using a custom microscope.
Untargeted lipidomics (Data S1) and targeted metabolomics (Data S2) analysis from in vitro culture of a murine macrophage cell line expressing shRNA targeted to Cardiolipin synthase (CRLS1), referred to as CRLS1 knockdown (KD), or a paired non-target shRNA-expressing (NT-Control). CRLS1 KD and NT-Control macrophages were either directly analyzed (untargeted lipidomics) or stimulated with lipopolysaccharide for a variety of timepoints and then analyzed (targeted metabolomics). Datasets are available as .csv files.
Reynolds M.B. et al. (2023). Cardiolipin coordinates inflammatory metabolic reprogramming through regulation of Complex II disassembly and degradation. Science Advances, 9(5). DOI: 10.1126/sciadv.ade8701
The data and scripts are meant to show how burster dynamics determine response to a single biphasic stimulus. The files include data which show trends in the propensity of termination for different burster types and the MATLAB scripts used to generate this data. The MATLAB scripts also allow the user to generate their own data sets for alternative bursting paths and stimulus parameter combinations. Furthermore, they allow the user to visually examine the effects of single stimuli in the voltage timeseries and in state space. How the user can access these features of the script is described in the file "ReadMe.pdf."
The characterization of HFO networks through functional connectivity analysis and network centrality. Details of the code repository can be found in the README.txt file.
Ionizing radiation acoustic imaging (iRAI) allows online monitoring of radiation’s interactions with tissues during radiation therapy, providing real-time, adaptive feedback for cancer treatments.
Using the data set presented here, this study demonstrated iRAI can image the temporal dose accumulation of a radiaiton treatment plan. Clincial standard treatment plan with both rabbit and patient in vivo were first real-time volumetric visulized by iRAI.
This data set is the rawdata for our paper published in Nature Biotechnology entitled "Real-time, volumetric imaging of radiation dose delivery deep into the liver during cancer treatment ".
An individual participant data meta-analysis was conducted to examine 1) the degree to which bedtime, wake time, and chronotype correlate with posttraumatic stress disorder (PTSD) severity among individuals diagnosed with PTSD, 2) the standardized mean difference in bedtime, wake time, and chronotype for those with and without a PTSD diagnosis, and 3) moderators of these relationships. This deposit includes the full dataset used for data analyses.
No proprietary software is required to open any of these files.
Zalta, A. K., Vanderboll, K., Dent, A. L., Contreras, I. M., Malek, N., Lascano, X. N., Zellner, K. L., Grandhi, J., Araujo, P. J., Straka, K., Liang, C. Z., Czarny, J. E., Martinez, J., & Burgess, H. J. (2023). Sleep timing, chronotype, and posttraumatic stress disorder: An individual participant data meta-analysis. Psychiatry research, 321, 115061. Advance online publication. https://doi.org/10.1016/j.psychres.2023.115061
The intent of the project was to identify all relevant studies and data related to the topic. There are searches for the following databases: Ovid MEDLINE, Elsevier Embase, Wiley Cochrane Central Register of Controlled Trials, and EBSCOhost CINAHL.
Bauer ME, Toledano RD, Houle T, Beilin Y, MacEachern M, McCabe M, Rector D, Cooper JP, Gernsheimer T, Landau R, Leffert L. Lumbar neuraxial procedures in thrombocytopenic patients across populations: A systematic review and meta-analysis. J Clin Anesth. 2020 May;61:109666. doi: 10.1016/j.jclinane.2019.109666. Epub 2019 Dec 4. PMID: 31810860. and Bauer ME, Arendt K, Beilin Y, Gernsheimer T, Perez Botero J, James AH, Yaghmour E, Toledano RD, Turrentine M, Houle T, MacEachern M, Madden H, Rajasekhar A, Segal S, Wu C, Cooper JP, Landau R, Leffert L. The Society for Obstetric Anesthesia and Perinatology Interdisciplinary Consensus Statement on Neuraxial Procedures in Obstetric Patients With Thrombocytopenia. Anesth Analg. 2021 Jun 1;132(6):1531-1544. doi: 10.1213/ANE.0000000000005355. PMID: 33861047.
The intent of the project was to identify all relevant studies and data related to the topic. There are searches for the following databases: Ovid MEDLINE, Elsevier Embase, Clarivate Web of Science, and Wiley Cochrane Central Register of Controlled Trials. The searches yielded 889 citations after duplicates were removed in Endnote X8.
Khouri AN, Adidharma W, MacEachern M, et al. The Current State of Fat Grafting in the Hand: A Systematic Review for Hand Diseases. HAND. February 2022. doi:10.1177/15589447211066347
Data comparing the Simplified Endoscopic Mucosal Assessment for Crohn's Disease (SEMA-CD) from video recordings of colonoscopies to SEMA-CD scoring of their corresponding colonoscopy reports from pediatric patients with Crohn's disease.
The search data supports a literature review project on Psychological Functioning in Pediatric Patients with Single Ventricle Congenital Heart Disease. The data included are the reproducible search strategies (txt file) and the exported results of all citations from all databases (txt, ris, and.nbib files). Both the original search files and updated search files have been included in the deposit.