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- Creator:
- Wang, Yi and Hendy, Ingrid L.
- Description:
- The dataset contains bulk sedimentary d15N, TOC, and TN data measured every 2 mm on the core SPR0901-03KC. Flood and turbidite layers are shaded with blue and orange in the files. and This work is supported by NSF OCE-1304327.
- Keyword:
- d15N, total organic carbon, nitrogen isotopes, SPR0901-03KC, and Santa Barbara Basin
- Citation to related publication:
- Wang, Y. , Hendy, I. L. and Thunell, R. (2019), Local and remote forcing of denitrification in the Northeast Pacific for the last 2000 years. Paleoceanography and Paleoclimatology. Volume 34, issue 8, pages 1517-1533. https://doi.org/10.1029/2019PA003577
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bunoge (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Bunoge, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
Burials
User Collection- Creator:
- Vani Archaeological Survey
- Description:
- Burials documented by the Vani Archaeological Survey
- Keyword:
- Burial
19Works -
Burkina Faso documentary videos
User Collection- Creator:
- Heath, Jeffrey G.
- Description:
- This is a collection of mostly short documentary-style videos related to linguistic fieldwork in southwestern Burkina Faso. The initial batch consists of videos produced in 2023, and others will be added. Versions of some of these videos overdubbed in native languages will also be produced for local consumption in Burkina. Most of the videos document everyday practical activities; some also feature useful native plants and insects. This collection is parallel to collections of videos from neighboring Mali: see "Central Mali documentary videos" (with documentaries produced up to 2018) and "Mali documentary videos from 2023 on" for the newer ones. A small collection from north-central Côte d'Ivoire is also in the works. Within each collection, the videos are organized into "works" based on the general type of activity documented.
- Keyword:
- Burkina Faso and documentary videos
- Discipline:
- Humanities
7Works -
- Creator:
- Lynch, Erin and van der Pluijm, Ben
- Description:
- High-resolution, low-angle XRD analysis of oriented clay samples (.txt files) and TC/EA, Mass Spectronometric analysis of oxygen and hydrogen isotopes (.xslx files)
- Keyword:
- fault gouge and geofluids
- Citation to related publication:
- In submission
- Discipline:
- Science
-
- Creator:
- Crisp, Dakota N., Parent, Rachel, Nakatani, Mitsuyoshi, Murphy, Geoffrey G. , and Stacey, William C.
- Description:
- This data and scripts are meant to test and show that seizure onset dynamics can be modulated using anti-epileptic drugs. A zip file is included that contains all waveform data, MATLAB processing scripts, and metadata. The MATLAB scripts allow for visual review validation and objective feature analysis. The file includes various README files explaining the scripts and their relationships in greater detail.
- Keyword:
- Bifurcation, Epilepsy, Seizure, and Electrophysiology
- Discipline:
- Health Sciences, Engineering, and Science
-
- Creator:
- Folz, Jeff
- Description:
- This data set includes four zipped files each containing unprocessed cell images from a single cell line collected as raw data, the scripts used to process these images and tabular files with the processed data outputs. This data set supports the PLOS ONE publication, "Cell-morphodynamic phenotype classification with application to cancer metastasis using cell magnetorotation and machine-learning."
- Discipline:
- Science
-
- Creator:
- Forrest, Stephen R., Panda, Anurag, Qu, Yue, Che, Xiaozhou, Coburn, Caleb, and Burlingame, Quinn
- Description:
- Mathematica Diffusion Simulation: Programmed by Coburn, Caleb. Simulation of diffusion in organic heterostructures, including least square fits and statistical goodness of fit analysis. Used to calculate fits to transient data in Fig 1, 3 and Extended Data Fig.2. Example data file included for download Matlab Montecarlo simulation: Programmed by Coburn, Caleb. Montecarlo simulation of charge diffusion on a cubic lattice to determine lateral diffusion length as a function of barrier height, assuming thermionic emission over the barrier. Matlab 2D Diffusion Simulation:Programmed by Coburn, Caleb. Modified from BYU Physics 430 Course Manual. Simulates diffusion around a film discontinuity, such a cut. Used to generate fits to Extended Data Fig. 1
- Keyword:
- Organic semiconductors and Charge diffusion
- Citation to related publication:
- Burlingame, Q., Coburn, C., Che, X., Panda, A., Qu, Y., & Forrest, S. R. (2018). Centimetre-scale electron diffusion in photoactive organic heterostructures. Nature, 554(7690), 77-80. https://doi.org/10.1038/nature25148
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos produced in the course of linguistic fieldwork. Most are presented here in three different video formats. "Gardening Diondiori" illustrates dry-season farming mostly of cash crops using ground water (springs, drying ponds and rivers, underground water sources). The other videos in this block are of ordinary rainwater agriculture done in the rainy season, featuring Dogon people and, in the case of "Rice harvest and threshing," Bangande (speakers of Bangime), who have the same agricultural methods. The principal rainy season crop in the zone is millet (Cenchrus spicatus), but most of the documentaries here are about secondary crops (cowpea, fonio, groundnut, peanut, groundnut, roselle, rice, sesame, sweet potato). "Driving off grain-eating birds" is based on an unsteady cellphone video brought to us, except for the final segments which we shot.
- Keyword:
- Mali, Dogon, and agriculture
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos made in the course of linguistic fieldwork. Includes blacksmithing, hide tanning, weaving, cotton spinning, weaving, reed flute making, pottery making, and construction in Dogon villages, and exotic traditional hair styling in Hombori (Songhay). Some of the videos are "compilations" of many short clips, others are in standard documentary form.
- Keyword:
- Mali, Dogon, Hombori, weaving, pottery, spinning, reed flute making, tanning, and coiffure
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Documentaries about festivals (some annual, some less often) and ceremonial events, filmed in the course of linguistic fieldwork in central Mali. Those relating to Dogon are: Bamba fishfest 2010; Degeju festival at Yendouma 2012; Dogon cowfest at Pergue 2011; Ginna Dogon 2011 Bandiagara; Koira Bery festival 2010; Songho circumcision 2010; Tomtoms of Tupere; and Yanda huntfest 2010. Bangande (speakers of Bangime) are represented in Tabaski at Bounou (the Muslim feast of the ram). Fulbe are represented in Cowfest at Bamguel 2011 (cowfests are a Fulbe specialty, but the Dogon of Pergue have their own). Songhay is represented by Coronation at Hombori 2011 (the enthronment or "intronisation" of a new king of Hombori). Videos are available in multiple formats.
- Keyword:
- Mali, Dogon, Songhay, Fulbe, and Bangande
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
Central Mali documentary videos
User Collection- Creator:
- Heath, Jeffrey G.
- Description:
- Short documentary videos of practical activities and cultural events of Dogon, Fulbe, Songhay, and Bangande ethnic groups of eastern Central Mali. The videos were byproducts of linguistic research on the local language. They are presented here in three formats: wmv, avi, and either qt or mov. See the "readme" files in each work for a summary of the videos in it. and The footage was shot with various digital cameras. The oldest videos (2010 and one or two from 2011) were edited using iMovie. The later videos were edited using AVS editing software. Several of the 2010 videos, referred to as "compilations," are simple sequences of short clips that combine to illustrate a complex activity such as extracting oil from nuts. The later videos are in more flowing documentary form with overlaid titles in English. In some cases, vocabulary from the relevant native language is included in the titles.
- Keyword:
- Mali and Dogon
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
7Works -
- Creator:
- Heath, Jeffrey
- Description:
- These are documentaries made in the course of linguistic fieldwork in central Mali. Most are presented here in three different video formats. All of those in the present group are of Dogon people. Beni village near Douentza figures in many of them. "Cooked spiced millet with roselle leaves" and "steamed cowpeas with millet" are from Walo village. "Cream of millet with tamarind" is from Bendiely village. "Beer brewing" is from Yanda village. "Groundnuts roasted and boiled" is from near Sévaré. "Macari" is from Kowo village near Sévaré. See also the separate works "Central Mali agriculture documentaries" and "Central Mali herding and dairy documentaries".
- Keyword:
- Mali, Dogon, food preparation, and beer brewing
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
Central Mali geography photos
User Collection- Creator:
- Heath, Jeffrey G.
- Description:
- This is a collection of photos of villages located primarily in Central Mali. These photos are primarily of Dogon villages, but there are village photos of other nearby ethnicities, including Bangande, Fulbe, Tuareg, Songay, and Bozo.These photos were taken to document the villages Professor Jeffrey Heath worked in and people he worked with while documenting languages throughout the region. For interactive geographical maps involving these villages see: http://dogonlanguages.org/geography.cfm.
- Keyword:
- Jamsay, Bangime, Tamashek, Ampari, Bannkan Tey, Ben Tey, Atlantic Fulfulde, Bunoge, Dogul Dom, Donno So, Mombo, Najamba-Kindige, Nanga, Penange, Tebul Ure, Tengou-Togo, Tiranige, Tommo So, Toro So, Tomo Kan, Toro Tegu, Yanda Dom, Moore, Bozo Jenama, Manding Bambara, Fulankiriya, Humburi Senni, Dogon, Fulbe, Bozo, Songhay, Tuareg, and Bangande
- Citation to related publication:
- www.dogonlanguages.org, http://dogonlanguages.org/geography.cfm, and http://dogonlanguages.org/sources/gpsdogonspreadsheetforllmap
- Discipline:
- Humanities
27Works -
- Creator:
- Heath, Jeffrey
- Description:
- These videos were produced in the course of linguistic fieldwork in central Mali. They are presented here in multiple video formats. The cattle herders par excellence in the zone are traditional Fulbe, who enter towns and Dogon villages to sell fresh and curdled milk along with butter.
- Keyword:
- Mali, Fulbe, cattle herding, and curdled milk
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- These videos were shot in Dogon villages. They show how wild foods (insects and plants) are obtained and consumed. Most are presented here in three video formats.
- Keyword:
- Mali, Dogon, honey, edible insects, and water lilies
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos done in the course of linguistic fieldwork in Central Mali. They are presented here in two or three video formats. The videos show how Dogon villagers press oil from nuts and fruit pits, make liquid soda ash (French potasse), and make soap. Some are in standard documentary form, some early ones ("compendiums") are sequences of brief clips. Most were made in Beni village or in the Douentza area.
- Keyword:
- Mali, Dogon, vegetable oils, soapmaking, and soda ash
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Documentary-style videos about villages and social relations in Dogon country. Documentaries are given in two or three video formats each.
- Keyword:
- Mali, Dogon, and villages
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Wu, Ziyou, Brunton, Steven L, and Revzen, Shai
- Description:
- These codes were produced as part of the Army Research Office Multi-University Research Initiative ARO MURI W911NF-17-1-0306 "From Data-Driven Operator Theoretic Schemes to Prediction, Inference, and Control of Systems" The code can be run using the runAll.sh shell script (in Linux and OS-X); code should work similarly under windows.
- Keyword:
- DMD, dimensionality reduction, dynamical systems, and nonlinear dynamics
- Discipline:
- Engineering and Science
-
- Creator:
- Eby, David W and Molnar, Lisa J
- Description:
- Data are contained in an Excel spreadsheet formatted such that each row is a separate participant and each column is a separate question. This file is called: EbyEtAl-TransportCaregiver. A data dictionary that gives the text for each question and the response categories mappings is contained in another Excel Spreadsheet. This file is called: EbyEtAl-TransportCaregiverDictionary. The text of the survey, the development of weights, and response rate calculations can be found in the Deep Blue report discussed previously.
- Keyword:
- Caregiver Burden, Driving, and Automobile
- Discipline:
- Social Sciences
-
- Creator:
- Liu, Meichen
- Description:
- The Brune source model is widely used in studies of complex earthquakes with multiple episodes of high moment release (i.e., multiple subevents). In this study, we investigate how corner frequency estimates of earthquakes with multiple subevents are biased if they are based on the Brune source model. By assuming complex sources as a sum of multiple Brune sources, we analyze 1,640 source time functions (STFs) of Mw 5.5-8.0 earthquakes in the SCARDEC catalog to estimate the corner frequencies, onset times, and seismic moments of subevents. We identify more subevents for strike-slip earthquakes than dip-slip earthquakes, and the number of resolvable subevents increases with magnitude. We find that earthquake corner frequency correlates best with the corner frequency of the subevent with the highest moment release (i.e., the largest subevent). This suggests that, when the Brune model is used, the estimated corner frequency and therefore the stress drop of a complex earthquake is determined primarily by the largest subevent rather than the total rupture area. and Our results imply that the stress variation of asperities, rather than the average stress change of the whole fault, contributes to the large variance of stress drop estimates.
- Citation to related publication:
- Meichen Liu, Yihe Huang, Jeroen Ritsema. 2021. Characterizing Multi-Subevent Earthquakes Using the Brune Source Model [Preprint]. https://essoar.org (2021) DOI: doi.org/10.1002/essoar.10507564.1
- Discipline:
- Science
-
- Creator:
- Hoover, Lindzey V
- Description:
- This study investigated the mediating role of emotion dysregulation in the association between childhood trauma and food addiction. Participants (n=310) completed self-report measures of food addiction, childhood trauma experiences, emotion dysregulation, and demographic variables. Pearson zero-order correlations were conducted to identify potential covariates. Age, socioeconomic status, BMI, and education were significantly associated with study variables and were included as covariates in analyses. Moderated mediational analyses were used to investigate whether DERS (emotion regulation) mediated the association between the CTQ (childhood trauma) and YFAS2.0 (food addiction) and to explore whether gender identity (men vs women) moderated this association. Emotion dysregulation partially mediated associations between food addiction and childhood trauma. Gender moderated associations between childhood trauma and emotion dysregulation as well as childhood trauma and food addiction. Both moderating pathways were significantly stronger for men compared to women. Results suggest that emotion dysregulation may be an important mediating factor in the association between childhood trauma and food addiction, particularly for men.
- Keyword:
- childhood trauma, food addiction, emotion dysregulation, and gender differences
- Citation to related publication:
- Hoover, L. V., Yu, H. P., Duval, E. R., & Gearhardt, A. N. (2022). Childhood trauma and food addiction: The role of emotion regulation difficulties and gender differences. Appetite. Advance online publication. DOI: 10.1016/j.appet.2022.106137
- Discipline:
- Social Sciences
-
- Creator:
- Yu, Chi-Lin, Eggleston, Rachel, Zhang, Kehui, Nickerson, Nia, Sun, Xin, Marks, Rebecca A., Hu, Xiaosu, Brennan, Jonathan R. , Wellman, Henry M. , and Kovelman, Ioulia
- Description:
- The dataset includes 51 children (age range = 6-12 years) who listened to the first chapter of Alice’s Adventures in Wonderland during fNIRS neuroimaging. We also provide the text of the story with several word-by-word predictors motivated by research in Theory of Mind development and language. These annotated, naturalistic datasets can be used to replicate prior work and test new hypotheses about everyday social cognition and natural language comprehension in the developing brain.
- Keyword:
- neuroimaging, fNIRS, Children, Theory of Mind, Language, Naturalistic Neuroscience, and Story Listening
- Discipline:
- Science
-
- Creator:
- Benjamin Leffel
- Description:
- The three datasets provided here identify the city location of all CDM projects in China by referencing the individual Project Description Documents (via the UNFCCC) attached to each project. Through this method, all 3,764 Clean Development Mechanism projects at the city-level in China are identified out of a total of over 8,000 globally.
- Keyword:
- climate finance, carbon offset, China, urban, clean development mechanism, cities, and climate change
- Citation to related publication:
- https://escholarship.org/uc/item/3vr8850s and https://doi.org/10.1002/wcc.709
- Discipline:
- Government, Politics and Law, Social Sciences, International Studies, and Business
-
Churches
User Collection- Creator:
- Vani Archaeological Survey
- Description:
- Churches documented by the Vani Archaeological Survey
- Keyword:
- Church
7Works -
- Creator:
- Ottaviani, Jim
- Description:
- This random sample of OA articles comes from Deep Blue <deepblue.lib.umich.edu/documents>, the University of Michigan’s institutional repository service. Each OA article has the following characteristics: Prior to a known date (ranging from 2006 to the 2013) these articles—the final published version—were only available by subscription. After that date, they became freely available via Deep Blue. Meanwhile, other articles from the same journal issue as the now-OA article continued to only be available to subscribers. None of the OA articles were self-selected; authors did not choose to deposit the articles in question in Deep Blue, since we made them open via blanket licensing agreements between the publishers and the library.
- Keyword:
- Open access publishing, Scientific publishing, Citation analysis, and Institutional repositories
- Citation to related publication:
- Ottaviani J (2016) The Post-Embargo Open Access Citation Advantage: It Exists (Probably), It’s Modest (Usually), and the Rich Get Richer (of Course). PLoS ONE 11(8): e0159614. https://doi.org/10.1371/journal.pone.0159614
- Discipline:
- Social Sciences
-
Classical (6th-4th cent. BCE)
User Collection- Creator:
- Vani Archaeological Survey
- Description:
- Classical activity documented by the Vani Archaeological Survey
- Keyword:
- Classical
28Works -
- Creator:
- Benjamin Leffel
- Description:
- Time series dataset of adoption by year of climate action plans by 177 U.S. cities, 2010-2019, with links to plans included. This dataset is intended for use by researchers and practitioners investigating both individual climate action plans and time series patterns of adoption at the municipal level.
- Keyword:
- climate change, climate action plan, municipal, and Urban Sustainability Research Group
- Discipline:
- Social Sciences and Government, Politics and Law
-
- Creator:
- Marchman, Timothy, Dominique, Daniel, Zhang, Huayile, Daneshvar, Fariborz, and Murphy Kevin
- Description:
- We created various files, including GIS files and data files for both the UM Hydrologic Modeling Team and for our own Escherichia coli sampling project. The UM Hydrologic Team used the files we created to make their models more accurate. For example, we edited Clinton River subwatershed files to better reflect below and above-ground infrastructure, and provided them to the modeling team. For our own E. coli subproject we created time series, GIS files, and R code to better understand the influence of precipitation and streamflow on E. coli dynamics. Our time-series data is based on baseline and storm sampling we conducted in the summer of 2021. We used GIS files to explore the subwatersheds of our E. coli sampling locations. Finally, we created R code to help us visualize and analyze the data.
- Discipline:
- Science
-
- Creator:
- Diaz-Espinosa, Jennifer, Stringer, Kathleen, and Rosania, Gus
- Description:
- These data were produced from a study that assessed mitochondrial metabolic function by measuring two metabolites, l-carnitine and acetylcarnitine, to determine their effectiveness as candidate clinical biomarkers for age-related, drug-induced alterations in mitochondrial metabolism. To study age and medication-related changes in mitochondrial metabolism, we administered the FDA-approved mitochondriotropic drug, clofazimine (CFZ), or vehicle for to young and old mice. These findings are described in our manuscript: Clofazimine-Mediated, Age-Related Changes in Skeletal Muscle Mitochondrial Metabolites. Data reported was supported by funding from the National Institute of General Medical Sciences (NIGMS) at the National Institutes of Health (NIH) under award numbers R01GM127787 (GRR), R35GM136312 (KAS), P30AR069620 (K Jepsen), and T32GM140223 (L Isom).
- Keyword:
- adverse drug reactions, mitochondrial metabolism, l-carnitine, acetylcarnitine, and cardiac muscle
- Citation to related publication:
- Metabolites 2023
- Discipline:
- Health Sciences
-
- Creator:
- Hoover, Lindzey V
- Description:
- This study investigated co-occurrence among food addiction (FA), problematic substance use (alcohol, cannabis, cigarettes, nicotine vaping), parental history of problematic alcohol use, and obesity. Participants (n=357) completed self-report measures on food addiction, personal substance use, and parental history of alcohol use. Participants also completed demographic questions and self-reported height and weight were used to calculate BMI. Pearson zero-order correlations were conducted to identify sociodemographic covariates (socioeconomic status, age, and sex at birth). Modified Poisson regression (with robust standard error estimations) were used to estimate risk ratios among food addiction, parental history of problematic alcohol use, personal substance use (alcohol, cannabis, cigarettes, nicotine vaping), and obesity. Significance was set at p<.05. However, given multiple testing, 99% CI estimates are reported in the final manuscript instead of 95% CI estimates. Unadjusted and adjusted (for sociodemographic covariates) analyses were conducted. Risk of food addiction was higher in participants with problematic alcohol, smoking, vaping, parental history of problematic alcohol use, and (in unadjusted only) cannabis use. Risk of food addiction was only higher in participants with obesity after adjusting for covariates. Obesity was not significantly associated with problematic substance use and parental history or problematic alcohol use. Thus, food addiction, but not obesity, co-occurred with problematic substance use and a family history of problematic alcohol use. Results support the conceptualization of food addiction as an addictive disorder.
- Keyword:
- Food Addiction, Substance Use, Obesity, and Family History
- Citation to related publication:
- Hoover, L. V., Yu, H. P., Cummings, J. R., Ferguson, S. G., & Gearhardt, A. N. (2022). Co-occurrence of food addiction, obesity, problematic substance use, and parental history of problematic alcohol use. Psychology of Addictive Behaviors. Advance online publication. DOI: 10.1037/adb0000870
- Discipline:
- Social Sciences
-
- Creator:
- Nunley, Hayden, Nagashima, Mikiko, Martin, Kamirah, Lorenzo Gonzalez, Alcides, Suzuki, Sachihiro C., Norton, Declan A., Wong, Rachel O. L., Raymond, Pamela A., and Lubensky, David K.
- Description:
- This dataset includes an example cell packing (containing ~20,000 cells). This example cell packing is the same cell packing in Supplementary Figure 11. The Corson_PBC_Square_Sweep_func.m is the main function for simulating lateral inhibition on this (and other) example packings. Please see readme for which simulation parameters may be tuned within this lateral inhibition function.
- Keyword:
- tissue patterning, lateral inhibition, and topological defect
- Citation to related publication:
- Nunley, H., Nagashima, M., Martin, K., Gonzalez, A. L., Suzuki, S. C., Norton, D. A., Wong, R. O. L., Raymond, P. A., & Lubensky, D. K. (2020). Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLOS Computational Biology, 16(12), e1008437. https://doi.org/10.1371/journal.pcbi.1008437 , Corson F, Couturier L, Rouault H, Mazouni K, Schweisguth F. Self-organized Notch dynamics generate stereotyped sensory organ patterns in Drosophila. Science. 2017 May 5;356(6337):eaai7407. doi: 10.1126/science.aai7407. Epub 2017 Apr 6. PMID: 28386027., and Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C. Suzuki, Declan Norton, Rachel O. L. Wong, Pamela A. Raymond, David K. Lubensky. Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation. bioRxiv 806679; doi: https://doi.org/10.1101/806679
- Discipline:
- Science
-
- Creator:
- Nunley, Hayden, Nagashima, Mikiko, Martin, Kamirah, Lorenzo Gonzalez, Alcides, Suzuki, Sachihiro C., Norton, Declan A., Wong, Rachel O. L., Raymond, Pamela A., and Lubensky, David K.
- Description:
- The most important part of this deposit is the code necessary for simulating the anisotropic phase-field crystal on a cone geometry. The second most important is the code for analyzing the simulation results, including the spatial distribution of Y-junctions in the simulated retinae. Included are simulation results in which we systematically scan both the undercooling parameters and the strength of noise in the initial conditions. Finally, we include an additional simulation example (as in Figure 7D). Please see readme file for description of main (MATLAB) functions used for simulating and analyzing simulations.
- Keyword:
- zebrafish cone mosaic, topological defects, grain boundaries, and phase-field crystal model
- Citation to related publication:
- Nunley, H., Nagashima, M., Martin, K., Gonzalez, A. L., Suzuki, S. C., Norton, D. A., Wong, R. O. L., Raymond, P. A., & Lubensky, D. K. (2020). Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLOS Computational Biology, 16(12), e1008437. https://doi.org/10.1371/journal.pcbi.1008437 and Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C. Suzuki, Declan Norton, Rachel O. L. Wong, Pamela A. Raymond, David K. Lubensky bioRxiv 806679; doi: https://doi.org/10.1101/806679
- Discipline:
- Science
-
- Creator:
- Atwell, Jon
- Description:
- The data file is json formatted and all fields are named descriptively. The code is written in Python 2.7 and is heavily commented.
- Keyword:
- inequality and coadaptation
- Citation to related publication:
- Atwell J, Savit R (2016) The Emergence of Groups and Inequality through Co-Adaptation. PLoS ONE 11(6): e0158144. https://doi.org/10.1371/journal.pone.0158144
- Discipline:
- Social Sciences and Science
-
- Creator:
- Li, Yang and Steiner, Allison
- Description:
- WRF-Chem simulation with 1.33 km resolution using the MYJ PBL scheme over the Baltimore-Washington region and WRF-Chem simulation with 1.33 km resolution using the YSU PBL scheme over the Baltimore-Washington region
- Keyword:
- LES, WRF-Chem, vertical mixing, oxidants, boundary layer dynamics
- Citation to related publication:
- Li, Y., Barth, M. C., and Steiner, A. L.: Comparing turbulent mixing of atmospheric oxidants across model scales, Atmospheric Environment, 199, 88-101, https://doi.org/10.1016/j.atmosenv.2018.11.004, 2018.
- Discipline:
- Science
-
- Creator:
- Sun, Hu
- Description:
- Complete Global Total Electron Content Database based on the VISTA Algorithm
- Keyword:
- Total Electron Content, Matrix Completion, VISTA, Spherical Harmonics, and Spatial-Temporal Smoothing
- Discipline:
- Engineering
2Works -
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Raw Dataset includes 1801 TIF images (each 503 x 663 x 1 voxel at 0.0382276 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Reconstructed Dataset includes 1775 TIF images (each 503 x 663 x 1 voxel at 0.038228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Raw Dataset includes 1801 TIF images (each 1376 x 1066 x 1 voxel at 0.01759152 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Reconstructed Dataset includes 1511 TIF images (each 1376 x 1066 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Reconstructed Dataset includes 2000 TIF images (each 1423 x 622 x 1 voxel at 0.047137 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Raw Dataset includes 1801 TIF images (each 1423 x 622 x 1 voxel at 0.04713662 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Pleuronectiformes, Achiridae, Achirus lineatus (Linnaeus, 1758), 1889075287, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889075287 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 745 x 669 x 1 voxel at 0.03313194 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1982 TIF images (each 745 x 669 x 1 voxel at 0.033132 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 2000 TIF images (each 789 x 814 x 1 voxel at 0.041352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 789 x 814 x 1 voxel at 0.04135232 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1899 TIF images (each 792 x 1999 x 1 voxel at 0.028030 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 792 x 1999 x 1 voxel at 0.02803018 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Raw Dataset includes 2401 TIF images (each 937 x 607 x 1 voxel at 0.07686836 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Reconstructed Dataset includes 2000 TIF images (each 937 x 607 x 1 voxel at 0.076868 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Beryciformes, Holocentridae, Myripristis multiradiatus Günther, 1874, 1889087579, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889087579 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Heterotis niloticus (University of Michigan Museum of Zoology catalog number UMMZ Fish 195004) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Osteoglossidae, and UMMZ
- Discipline:
- Social Sciences
-
- Creator:
- Capobianco, Alessio
- Description:
- Reconstructed CT slices for skull of Petrocephalus simus (University of Michigan Museum of Zoology catalog number UMMZ Fish 200167) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Mormyridae, and UMMZ
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 678 x 1023 x 1 voxel at 0.05847154 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 678 x 1023 x 1 voxel at 0.058472 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 976 x 737 x 1 voxel at 0.05842386 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 976 x 737 x 1 voxel at 0.058424 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 2000 TIF images (each 574 x 626 x 1 voxel at 0.075148 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 574 x 626 x 1 voxel at 0.07514755 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 703 x 808 x 1 voxel at 0.07640627 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 1912 TIF images (each 703 x 808 x 1 voxel at 0.076406 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Raw Dataset includes 1801 TIF images (each 667 x 582 x 1 voxel at 0.03322767 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Reconstructed Dataset includes 2000 TIF images (each 667 x 582 x 1 voxel at 0.033228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Reconstructed Dataset includes 1827 TIF images (each 1439 x 1229 x 1 voxel at 0.016076 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Raw Dataset includes 1801 TIF images (each 1439 x 1229 x 1 voxel at 0.01607582 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Reconstructed Dataset includes 2000 TIF images (each 554 x 759 x 1 voxel at 0.055272 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Raw Dataset includes 1801 TIF images (each 554 x 759 x 1 voxel at 0.05527194 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Raw Dataset includes 1801 TIF images (each 1353 x 1576 x 1 voxel at 0.02222504 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Reconstructed Dataset includes 1399 TIF images (each 1353 x 1576 x 1 voxel at 0.022225 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 745 x 780 x 1 voxel at 0.06201822 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 745 x 780 x 1 voxel at 0.062018 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 632 x 853 x 1 voxel at 0.02187606 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1972 TIF images (each 632 x 853 x 1 voxel at 0.021876 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Reconstructed Dataset includes 1395 TIF images (each 1166 x 1597 x 1 voxel at 0.018640 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Raw Dataset includes 2401 TIF images (each 1166 x 1597 x 1 voxel at 0.01863954 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1923 TIF images (each 663 x 1263 x 1 voxel at 0.027589 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 663 x 1263 x 1 voxel at 0.02758892 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 717 x 688 x 1 voxel at 0.06149898 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1874 TIF images (each 717 x 688 x 1 voxel at 0.061499 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 820 x 704 x 1 voxel at 0.039218 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 820 x 704 x 1 voxel at 0.0392176 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 693 x 471 x 1 voxel at 0.040486 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 693 x 471 x 1 voxel at 0.04048587 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1964 TIF images (each 572 x 784 x 1 voxel at 0.035928 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 572 x 784 x 1 voxel at 0.03592832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1949 TIF images (each 583 x 953 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 583 x 953 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 741 x 682 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 741 x 682 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1987 TIF images (each 683 x 585 x 1 voxel at 0.067089 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 683 x 585 x 1 voxel at 0.06708945 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 665 x 474 x 1 voxel at 0.08304352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1979 TIF images (each 665 x 474 x 1 voxel at 0.083044 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1825 TIF images (each 971 x 763 x 1 voxel at 0.048959 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 971 x 763 x 1 voxel at 0.04895912 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Raw Dataset includes 2401 TIF images (each 1316 x 1285 x 1 voxel at 0.02652906 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Reconstructed Dataset includes 1471 TIF images (each 1316 x 1285 x 1 voxel at 0.026529 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Stomiiformes, Sternoptychidae, Argyropelecus aculeatus Valenciennes, 1850, 1889127527, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889127527 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- Capobianco, Alessio
- Description:
- Reconstructed CT slices for skull of Chitala blanci (University of Michigan Museum of Zoology catalog number UMMZ Fish 232272) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Notopteridae, and UMMZ
- Discipline:
- Science
-
Computed tomography voxel dataset for ummz:fish:240774-Channa limbata (Cuvier, 1831)-14d_etoh-DiceCT
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 652 x 614 x 1 voxel at 0.082357 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 652 x 614 x 1 voxel at 0.08235723 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 661 x 603 x 1 voxel at 0.082827 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 661 x 603 x 1 voxel at 0.08282655 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Raw Dataset includes 2401 TIF images (each 368 x 397 x 1 voxel at 0.06675832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Reconstructed Dataset includes 1982 TIF images (each 368 x 397 x 1 voxel at 0.066758 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Raw Dataset includes 2001 TIF images (each 1229 x 855 x 1 voxel at 0.02452474 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Reconstructed Dataset includes 1883 TIF images (each 1229 x 855 x 1 voxel at 0.024525 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Hiodon tergisus (University of Michigan Museum of Zoology catalog number UMMZ Fish 247425) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Hiodontidae, and UMMZ
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Pantodon buchholzi (University of Michigan Museum of Zoology catalog number UMMZ Fish 249782) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Pantodontidae, and UMMZ
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 581 x 834 x 1 voxel at 0.08030222 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 1972 TIF images (each 581 x 834 x 1 voxel at 0.080302 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 2000 TIF images (each 1021 x 1177 x 1 voxel at 0.068930 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 1021 x 1177 x 1 voxel at 0.06893014 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 480 x 677 x 1 voxel at 0.082385 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 480 x 677 x 1 voxel at 0.0823851 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 797 x 753 x 1 voxel at 0.08151283 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 797 x 753 x 1 voxel at 0.081513 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 709 x 798 x 1 voxel at 0.082618 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 3141 TIF images (each 709 x 798 x 1 voxel at 0.08261846 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 374 x 555 x 1 voxel at 0.03162589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1729 TIF images (each 374 x 555 x 1 voxel at 0.031626 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Reconstructed Dataset includes 1851 TIF images (each 1221 x 1165 x 1 voxel at 0.016589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Raw Dataset includes 2401 TIF images (each 1221 x 1165 x 1 voxel at 0.01658923 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 888 x 988 x 1 voxel at 0.029451 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 888 x 988 x 1 voxel at 0.02945109 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 501 x 454 x 1 voxel at 0.08823032 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1938 TIF images (each 501 x 454 x 1 voxel at 0.088230 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 518 x 762 x 1 voxel at 0.040341 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 518 x 762 x 1 voxel at 0.04034065 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 630 x 347 x 1 voxel at 0.04505992 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 630 x 347 x 1 voxel at 0.045060 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 521 x 643 x 1 voxel at 0.04052231 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1970 TIF images (each 521 x 643 x 1 voxel at 0.040522 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Raw Dataset includes 1801 TIF images (each 544 x 834 x 1 voxel at 0.03868037 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Reconstructed Dataset includes 2000 TIF images (each 544 x 834 x 1 voxel at 0.038680 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Reconstructed Dataset includes 1217 TIF images (each 1433 x 1028 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Raw Dataset includes 1801 TIF images (each 1433 x 1028 x 1 voxel at 0.01759157 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Raw Dataset includes 1801 TIF images (each 637 x 456 x 1 voxel at 0.05305043 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Reconstructed Dataset includes 1945 TIF images (each 637 x 456 x 1 voxel at 0.053050 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Gymnotiformes, Sternopygidae, Eigenmannia viricens, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:116965 (CHRYSOPELEA PARADISI) - Skull. Raw Dataset includes 1601 TIF images (each 760 x 1231 x 1 voxel at 0.01844824 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:116965 (CHRYSOPELEA PARADISI) - Skull. Reconstructed Dataset includes 751 TIF images (each 760 x 1231 x 1 voxel at 0.018448 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, CHRYSOPELEA PARADISI, 1987085793, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987085793
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:116965 (CHRYSOPELEA PARADISI) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 2000 x 846 x 1 voxel at 0.049512 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:116965 (CHRYSOPELEA PARADISI) - WholeBody. Raw Dataset includes 1601 TIF images (each 2000 x 846 x 1 voxel at 0.04951242 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, CHRYSOPELEA PARADISI, 1987085793, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987085793
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen UMMZ:herps:130609 (PHAEOGNATHUS HUBRICHTI) - Skull. Raw Dataset includes 1601 TIF images (each 1324 x 1087 x 1 voxel at 0.01110375 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen UMMZ:herps:130609 (PHAEOGNATHUS HUBRICHTI) - Skull. Reconstructed Dataset includes 1951 TIF images (each 1324 x 1087 x 1 voxel at 0.011104 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Amphibia, CAUDATA, PLETHODONTIDAE, PHAEOGNATHUS HUBRICHTI, 1987157237, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987157237
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen UMMZ:herps:130609 (PHAEOGNATHUS HUBRICHTI) - WholeBody. Raw Dataset includes 1601 TIF images (each 373 x 372 x 1 voxel at 0.1000025 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen UMMZ:herps:130609 (PHAEOGNATHUS HUBRICHTI) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 373 x 372 x 1 voxel at 0.100002 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Amphibia, CAUDATA, PLETHODONTIDAE, PHAEOGNATHUS HUBRICHTI, 1987157237, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987157237
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:177463 (LEIOPELMA HOCHSTETTERI) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 659 x 1423 x 1 voxel at 0.023619 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:177463 (LEIOPELMA HOCHSTETTERI) - WholeBody. Raw Dataset includes 1601 TIF images (each 659 x 1423 x 1 voxel at 0.02361855 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Amphibia, ANURA, LEIOPELMATIDAE, LEIOPELMA HOCHSTETTERI, 1987038228, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987038228
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:177463 (LEIOPELMA HOCHSTETTERI) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 506 x 1232 x 1 voxel at 0.026167 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:177463 (LEIOPELMA HOCHSTETTERI) - WholeBody. Raw Dataset includes 3141 TIF images (each 506 x 1232 x 1 voxel at 0.02616705 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Amphibia, ANURA, LEIOPELMATIDAE, LEIOPELMA HOCHSTETTERI, 1987038228, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987038228
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:181698 (CHRYSOPELEA PARADISI) - Skull. Raw Dataset includes 1601 TIF images (each 378 x 682 x 1 voxel at 0.01542104 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:181698 (CHRYSOPELEA PARADISI) - Skull. Reconstructed Dataset includes 927 TIF images (each 378 x 682 x 1 voxel at 0.015421 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, CHRYSOPELEA PARADISI, 1987124862, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987124862
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:181698 (CHRYSOPELEA PARADISI) - WholeBody. Raw Dataset includes 1601 TIF images (each 1703 x 1701 x 1 voxel at 0.03202086 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:181698 (CHRYSOPELEA PARADISI) - WholeBody. Reconstructed Dataset includes 1402 TIF images (each 1703 x 1701 x 1 voxel at 0.032021 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, CHRYSOPELEA PARADISI, 1987124862, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987124862
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Raw Dataset includes 1601 TIF images (each 1416 x 914 x 1 voxel at 0.0150099083890765 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - Skull. Reconstructed Dataset includes 654 TIF images (each 1416 x 914 x 1 voxel at 0.015010 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Raw Dataset includes 1601 TIF images (each 2000 x 2000 x 1 voxel at 0.0327439804971583 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:246849 (THAMNODYNASTES PALLIDUS) - WholeBody. Reconstructed Dataset includes 1240 TIF images (each 2000 x 2000 x 1 voxel at 0.032744 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, OPHIDIA, COLUBRIDAE, THAMNODYNASTES PALLIDUS, 1987213257, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987213257
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:herps:90288 (SEPSINA TETRADACTYLA) - Skull. Reconstructed Dataset includes 1479 TIF images (each 687 x 924 x 1 voxel at 0.010001 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:herps:90288 (SEPSINA TETRADACTYLA) - Skull. Raw Dataset includes 1601 TIF images (each 687 x 924 x 1 voxel at 0.01000145 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Reptilia, SAURIA, SCINCIDAE, SEPSINA TETRADACTYLA, 1987065539, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987065539
- Discipline:
- Science