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- Creator:
- Galaty, Michael
- Description:
- Raw geophysical data from GPR surveys at Gajtan, reported at multiple depth slices.
- Keyword:
- archaeology
- Discipline:
- Science and Humanities
-
- Creator:
- Galaty, Michael
- Description:
- The database for each site includes level and feature forms for each excavated unit. These forms describe each level or feature in detail, including soil color and texture, soil inclusions, artifact density, disturbances, pertinent measurements, etc.
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Galaty, Michael
- Description:
- Photos are of each level in each unit, and of features. Photos are labeled with the site number, date taken, and a ID number, e.g., S015-05262014-001 = the first photo taken on May 25, 2014 during the excavation of Zagorë. The photolog lists each photo taken of a site during excavation in order by photo number (site number, date taken, ID number), with a description.
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Galaty, Michael
- Description:
- PDFs of Accelerator Mass Spectroscopy (AMS) radiocarbon reports, including calibration curves. Reports include sample type (e.g., charcoal, bone, sediment), date, date calibrated, standard deviation, etc.
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
Real-time, volumetric imaging of radiation dose delivery deep into the liver during cancer treatment
- Creator:
- Wei Zhang
- Description:
- Ionizing radiation acoustic imaging (iRAI) allows online monitoring of radiation’s interactions with tissues during radiation therapy, providing real-time, adaptive feedback for cancer treatments. Using the data set presented here, this study demonstrated iRAI can image the temporal dose accumulation of a radiaiton treatment plan. Clincial standard treatment plan with both rabbit and patient in vivo were first real-time volumetric visulized by iRAI. This data set is the rawdata for our paper published in Nature Biotechnology entitled "Real-time, volumetric imaging of radiation dose delivery deep into the liver during cancer treatment ".
- Discipline:
- Health Sciences
-
- Creator:
- Galaty, Michael
- Description:
- This collection includes all of the data from auger holes and cores drilled by PASH in the vicinity of Lake Shkodra. These data are stored as comma-separated text files (.CSV). They are organized into eight different worksheets, titled: 1) Auger Hole Summary; 2) Auger Hole Sample Data; 3) Core 4 Data; 4) Core 5 Data; 5) Core 6 Data; 6) Core 8 Data; 7) Core 9 Data; and 8) PASH geological data ALL (Excel)., See readme for full description., and Chapter linked to: Chapter Two
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Walker, Logan A, Li, Ye, McGlothlin, Maggie, and Cai, Dawen
- Description:
- These are datasets released from our manuscript "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications". Included in this data release are: `noise16.tif`: a file containing background noise collected from a 1000-frame acquisition of a ORCA-Fusion camera; `noise8.tif`: a file containing the 16-bit data collective above converted into a 8-bit form; `brainbow.tif`: This is a mouse Brainbow image originally published and described in Roossien, et al. Bioinformatics 2019; `bead.tif`: This is a 3D image of 100nm Invitrogen TetraSpeck fluorescent microspheres imaged in a blue channel using a custom microscope; `fly.tif`: This is a 3D image of a fly Bitbow brain collected as described in Li, et al. Front. Neural Circuits 2021; and `neurite.tif`: This is a 3D image of DiD-labeled mouse V1 tissue, collected using a custom microscope.
- Keyword:
- neuroscience, microscopy, and Bitbow
- Discipline:
- Health Sciences
-
- Creator:
- Lin, Jack and Stacey, William C.
- Description:
- The characterization of HFO networks through functional connectivity analysis and network centrality. Details of the code repository can be found in the README.txt file.
- Keyword:
- Epilepsy, High Frequency Oscillation, HFO, Network, and EEG
- Citation to related publication:
- Pending
- Discipline:
- Health Sciences
-
- Creator:
- Szuromi, Matthew P. and Stacey, William C.
- Description:
- The data and scripts are meant to show how burster dynamics determine response to a single biphasic stimulus. The files include data which show trends in the propensity of termination for different burster types and the MATLAB scripts used to generate this data. The MATLAB scripts also allow the user to generate their own data sets for alternative bursting paths and stimulus parameter combinations. Furthermore, they allow the user to visually examine the effects of single stimuli in the voltage timeseries and in state space. How the user can access these features of the script is described in the file "ReadMe.pdf."
- Keyword:
- Epilepsy, Stimulation, Modelling, Dynamics, Seizure, and Dynamotype
- Citation to related publication:
- (PROVISIONAL) Optimization of Ictal Aborting Stimulation Using the Dynamotype Taxonomy
- Discipline:
- Health Sciences, Engineering, and Science
-
- Creator:
- Zelditch, Miriam L. and Swiderski, Donald L.
- Description:
- Each row in the file contains the museum ID (museum where the specimen is located and the accession number), the species name, and the values for centroid size, followed by the x,y coordinates for each landmark. Any program that can read in a csv file can read this file.
- Keyword:
- Shape, Sciuridae, mandibles
- Citation to related publication:
- Zelditch, M.L., Swiderski, D.L. The Predictable Complexity of Evolutionary Allometry. Evol Biol (2022). https://doi.org/10.1007/s11692-022-09581-1
- Discipline:
- Science
-
- Creator:
- Ponder, Brandon M., Ridley, Aaron J., Goel, Ankit, and Bernstein, Dennis S.
- Description:
- This research was completed to statistically validate that a data-model refinement technique could integrate real measurements to remove bias from physics-based models via changing the forcing parameters such as the thermal conductivity coefficients.
- Keyword:
- Thermosphere, GITM, CHAMP, GRACE, MSIS, Upper Atmosphere Modeling, and Data Assimilation
- Citation to related publication:
- Ponder, B. M., Ridley, A. J., Goel, A., & Bernstein, D. S. (2023). Improving forecasting ability of GITM using data-driven model refinement. Space Weather, 21, e2022SW003290. https://doi.org/10.1029/2022SW003290
- Discipline:
- Engineering and Science
-
- Creator:
- Teplitskiy, Misha, Peng, Hao, Blasco, Andrea, and Lakhani, Karim R.
- Description:
- The data sources and methods used to process the raw data are described in the paper www.doi.org/10.1073/pnas.2118046119 and the associated Supplementary Information. These data are anonymized (see Methodology for details). Consequently, running the same code on these data vs. the data in the paper does not yield *identical* results but qualitatively similar ones.
- Citation to related publication:
- www.doi.org/10.1073/pnas.2118046119
- Discipline:
- Social Sciences
-
Supporting data: Domain-agnostic predictions of nanoscale interactions in proteins and nanoparticles
- Creator:
- Saldinger, Jacob, Raymond, Matt , Elvati, Paolo, and Violi, Angela
- Description:
- The accurate and rapid prediction of generic nanoscale interactions is a challenging problem with broad applications. Much of biology functions at the nanoscale, and our ability to manipulate materials and purposefully engage biological machinery requires knowledge of nano-bio interfaces. While several protein-protein interaction models are available, they leverage protein-specific information, limiting their abstraction to other structures. Here, we present NeCLAS, a general, and rapid machine learning pipeline that predicts the location of nanoscale interactions, providing human-intelligible predictions. Two key aspects distinguish NeCLAS: coarse-grained representations, and the use of environmental features to encode the chemical neighborhood. We showcase NeCLAS with challenges for protein-protein, protein-nanoparticle and nanoparticle-nanoparticle systems, demonstrating that NeCLAS replicates computationally- and experimentally-observed interactions. NeCLAS outperforms current nanoscale prediction models, and it shows cross-domain validity, qualifying as a tool for basic research, rapid prototyping, and design of nanostructures., Software: - To reproduce all-atom molecular dynamics (MD) NAMD is required (version 2.14 or later is suggested). NAMD software and documentation can be found at https://www.ks.uiuc.edu/Research/namd/, - To reproduce coarse-grained MD simulations, LAMMPS (version 29 Sep 2021 - Update 2 or later is suggested). LAMMPS software and documentation can be found at https://www.lammps.org, - To rebuild free energy profiles, the PLUMED plugin (version 2.6) was used. PLUMED software and documentation can be found at https://www.plumed.org/ , and - To generate force matching potentials, the was used the OpenMSCG software was used. OpenMSCG software and documentation can be found at https://software.rcc.uchicago.edu/mscg/
- Keyword:
- Neural Networks, Proteins, Dimensionality Reduction, Nanoparticles, and Coarse-Graining
- Citation to related publication:
- https://www.biorxiv.org/content/10.1101/2022.08.09.503361v2
- Discipline:
- Science
-
- Creator:
- Hernandez, Isabel, Sun, Xin, Zhang, Kehui, Marks, Rebecca, Karas, Zachary, Eggleston, Rachel, Nickerson, Nia, Yu, Chi-Lin, Wagley, Neelima, Hu, Xiaosu, Caruso, Valeria, Tardif, Twila, Satterfield, Teresa, Chou, Tai-Li, and Kovelman, Ioulia
- Description:
- In a broad sense, this dataset explores morphological and phonological processing in English monolinguals and two bilingual populations, Chinese-English and Spanish-English, using a battery of standardized and self-developed behavioral measures. Language: English - Spanish - Chinese
- Discipline:
- Science
-
- Creator:
- Kort, Eric A., Plant, Genevieve, and Dacic, Natasha
- Description:
- As part of the Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) project, in 2021 the aircraft platform sampled the agriculture regions of Nebraska and Iowa. Vertical profiles were conducted on each flight to capture the vertical structure and mixing depths of the atmosphere. The data files contains the merged data for each individual file day.
- Keyword:
- Greenhouse Gas, Agriculture , and Nitrous Oxide
- Citation to related publication:
- Gvakharia A, Kort EA, Smith M, Conley S, Testing and evaluation of a new airborne system for continuous N2O, CO2, CO, and H2O measurements: the Frequent Calibration High-performance Airborne Observation System (FCHAOS), Atmos. Meas. Tech. 11, 6059-6074, https://doi.org/10.5194/amt-11-6059-2018, 2018, Conley S, Faloona I.C, Lenschow D.H, Karion A, Sweeney S, (2014) A low-cost system for measuring horizontal winds from single-engine aircraft, Journal of Atmospheric and Oceanic Technology, 31(6), 1312-1320, https://doi.org/10.1175/JTECH-D-13-00143.1, Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa" by Natasha Dacic, Genevieve Plant, and Eric A Kort. Journal of Geophysical Research: Atmospheres. Submitted., and 2022 dataset: Kort, E. A., Plant, G., Dacic, N. (2024). Aircraft Data (2022) for Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/tmfd-nw87
- Discipline:
- Science
-
- Creator:
- Yu, Chi-Lin, Eggleston, Rachel, Zhang, Kehui, Nickerson, Nia, Sun, Xin, Marks, Rebecca A., Hu, Xiaosu, Brennan, Jonathan R. , Wellman, Henry M. , and Kovelman, Ioulia
- Description:
- The dataset includes 51 children (age range = 6-12 years) who listened to the first chapter of Alice’s Adventures in Wonderland during fNIRS neuroimaging. We also provide the text of the story with several word-by-word predictors motivated by research in Theory of Mind development and language. These annotated, naturalistic datasets can be used to replicate prior work and test new hypotheses about everyday social cognition and natural language comprehension in the developing brain.
- Keyword:
- neuroimaging, fNIRS, Children, Theory of Mind, Language, Naturalistic Neuroscience, and Story Listening
- Discipline:
- Science
-
- Creator:
- Butterfield, Zachary, Muccio, Daniel, and Keppel-Aleks, Gretchen
- Description:
- Solar-induced chlorophyll fluorescence (SIF) is an emission of photons during photosynthesis that can be used to make inferences about gross primary productivity (GPP) and carbon uptake of vegetation. With a recent proliferation of available satellite-based observations of SIF, there is much interest in assessing how SIF relates to GPP across multiple temporal and spatial scales. Tower-based observations of SIF at high temporal resolution provide a key link between satellite data and local surface-based observations of ecosystem productivity. We collected tower-based observations of SIF and several vegetation indices using a PhotoSpec spectrometer system deployed on the AmeriFlux tower at UMBS (US-UMB). As the data were collected alongside concurrent eddy flux observations of carbon exchange, they provide a unique opportunity to explore how SIF and other vegetation signals relate to GPP in a temperate deciduous forest and better inform the interpretation of satellite observations.
- Keyword:
- Solar-induced chlorophyll fluorescence, gross primary production, temperate deciduous forest, remote sensing, flux observations, forest productivity
- Citation to related publication:
- Butterfield, Z., Magney, T., Grossmann, K., Bohrer, G., Vogel, C., Barr, S., & Keppel-Aleks, G. (2023). Accounting for Changes in Radiation Improves the Ability of SIF to Track Water Stress-Induced Losses in Summer GPP in a Temperate Deciduous Forest. Journal of Geophysical Research: Biogeosciences, 128, e2022JG007352. https://doi.org/10.1029/2022JG007352
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey
- Description:
- For content see the "notes" file inside the work. Most of the recordings are translated and annotated at the end of the reference grammar (see link to Deep Blue Documents).
- Keyword:
- Bozo, Jenaama, Cliffs
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- recording in mp3 format. The reference grammar (see link to Deep Blue Documents) presents transcription and analysis as "text 2021-01."
- Keyword:
- Bozo, Jenaama, Sorogaama
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- recordings made in Barato village. Referred to as "text 2021-02" and "text 2021-03." Text 2021-03 is transcribed and annotated at the end of the reference grammar (see link to Deep Blue Documents). Text 2021-02 covers a subset of the same content and has not been transcribed as of late 2022. See also "notes" file inside the work.
- Keyword:
- Bozo, Jenaama, Sorogaama
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- these and other recordings are data for a reference grammar of Kelenga that, when completed, will be archived in the collection "Bozo languages of Mali (documents)" in Deep Blue Documents. For contents see the "notes" file inside the work. A few of the Kelenga texts are being transcribed, others will be left for others to transcribe or listen to as they wish.
- Keyword:
- Bozo and Kelenga
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- A subset of the Kelenga recordings are being transcribed and will serve as data for the Kelenga reference grammar which, when finished, will be included in the collection "Bozo languages of Mali (documents)" in Deep Blue Documents (see link).
- Keyword:
- Bozo and Kelenga
- Discipline:
- Humanities
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentistry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118711 Mammuthus primigenius block number 1 (proximalmost) removed from tusk as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentistry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118711 Mammuthus primigenius block number 10 (distalmost) removed from tusk as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for tusk block number 2 of Mammuthus primigenius (University of Michigan Museum of Paleontology catalog number UMMP VP 118711) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- Bougher, Stephen W. and Roeten, Kali J.
- Description:
- The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking daily (systematic) measurements of the densities and temperatures in the upper atmosphere of Mars between about 140 to 240 km above the surface. Wind measurement campaigns are also conducted once per month for 5-10 orbits. These densities, temperatures and winds change with time (e.g. season, local time) and location, and sometimes fluctuate quickly. Global dust storm events are also known to significantly impact these density, temperature and wind fields in the Mars thermosphere. Such global dust storm period measurements can be compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. This is an ongoing detailed comparison between direct global dust storm period measurements in the upper atmosphere of Mars and simulated MGITM fields and is important because it can help to inform us what physical processes are acting on the upper atmosphere during such large dust events. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars also provides key context for understanding how the atmosphere behaves as a whole system. A basic version of the M-GITM code can be found on Github as follows: https:/github.com/dpawlows/MGITM [less] About 4 months of Neutral Gas and Ion Mass Spectrometer (NGIMS) measurements of densities and winds have been made by the MAVEN team during the summer of 2018 (Elrod et al., 2019; Roeten et al 2022). For this specialized archive (Elrod et al. 2023), one reference measurement interval during this 2018 global dust storm (30-31 August 2018) is selected for detailed study of helium distributions (Elrod et al. 2023). The Mars conditions for this last of nine intervals have been used to launch corresponding M-GITM code simulations, yielding 3-D neutral density, temperature and wind fields for comparison to these NGIMS measurements. This last interval is used to provide M-GITM datacubes to explicitly extract the helium density (plus corresponding temperatures and neutral winds) along the trajectory of each orbit path between 140 and 240 km . A general README file is also provided for this Deep Blue Data archive detailing the contents of each file, while also summarizing the inputs and outputs of the M-GITM code simulations for this study.
- Keyword:
- Mars , NASA MAVEN spacecraft, Mars Thermosphere, Global Dust Strom of 2018, and Helium distribution
- Citation to related publication:
- Elrod, M. K., S. W. Bougher, K. Roeten, R. Sharrar, J. Murphy, Structural and Compositional Changes in the Upper Atmosphere related to the PEDE-2018 Dust Event on Mars as Observed by MAVEN NGIMS, Geophys. Res. Lett., (2019). doi: 10.1029/2019GL084378. and Elrod, M. K., S. W. Bougher, K. Roeten and K. Arnold, Surprising Decrease in the Martian He Bulge during PEDE-2018 and Changes in Upper Atmospheric Circulation, J. Geophysical Research, (2023), doi:XXX
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentostry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118186 Loxodonta africana tusk core as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, and a4f83cc6-09f2-0032-8a09-60ea798f787c
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and Micro and Nano CT Advanced Imaging Core, Orthopaedic Research Laboratories, University of Michigan
- Description:
- Reconstructed CT slices for UMMP VP 118710 Mammuthus primigenius proximal tusk segment as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, and 4760d0fa-a763-23d2-1be9-89bb1aaf711c
- Discipline:
- Science
-
- Creator:
- Reynolds, Mack B., Hong, Hanna S., Zhang, Li, Lyssiotis, Costas A., and O'Riordan, Mary X.
- Description:
- Untargeted lipidomics (Data S1) and targeted metabolomics (Data S2) analysis from in vitro culture of a murine macrophage cell line expressing shRNA targeted to Cardiolipin synthase (CRLS1), referred to as CRLS1 knockdown (KD), or a paired non-target shRNA-expressing (NT-Control). CRLS1 KD and NT-Control macrophages were either directly analyzed (untargeted lipidomics) or stimulated with lipopolysaccharide for a variety of timepoints and then analyzed (targeted metabolomics). Datasets are available as .csv files.
- Keyword:
- Lipidomics, Metabolomics, Cardiolipin, Macrophage, CRLS1, lipopolysaccharide, and LPS
- Citation to related publication:
- Reynolds M.B. et al. (2023). Cardiolipin coordinates inflammatory metabolic reprogramming through regulation of Complex II disassembly and degradation. Science Advances, 9(5). DOI: 10.1126/sciadv.ade8701
- Discipline:
- Health Sciences
-
- Creator:
- Su, Xue, Zhang, Youxue, Liu, Yang, and Holder, Robert M.
- Description:
- It is commonly thought that volcanic glass only records volatile loss during the eruptions in the Moon. However, our recent work shows that Na, K and Cu (moderately volatile elements) in lunar 74220 orange glass beads are enriched near the bead surfaces and depleted in the bead interiors, forming an overall “U-shaped” profile. The “U-shaped” profile means that rather than being “lost” into space, Na, K and Cu were “gained” into the volcanic glass during the eruption, which is contrary to the “volatile loss” story. Three different instruments (EMP, SIMS and LA-ICP-MS) were used to verify the discovery. We propose that such U-shaped Na, K and Cu profiles were formed by initial outgassing and subsequent in-gassing of Na, K and Cu when the beads were flying from the vent onto the surface through the cooling volcanic gas plume. Hence, in-gassing and the formation of surface coatings are two processes that are genetically linked during the pyroclastic eruption and evolution of the gas cloud. To quantify the processes that formed the U-shaped profiles, we developed a diffusion and surface-equilibrium model using available literature data on Na and Cu diffusivity in basaltic melts. The model reproduced U-shaped Na and Cu concentration profiles with outgassing at high temperature and subsequent in-gassing as beads cooled. By fitting the measured Na and Cu profiles, we found that the cooling time scales of individual orange glass beads range from 48 to 179 s. This is the first time that both outgassing and in-gassing were modeled and the cooling time scales of individual 74220 volcanic orange glass beads were estimated. The discovery of the U-shaped profiles of moderately volatile elements inside volcanic beads provides significant constraints on partial pressures of relevant volcanic gas species in the eruption plume.
- Keyword:
- Moon, Volcanic orange glass beads, Moderately volatile elements, Outgassing and in-gassing, and Cooling time scales
- Citation to related publication:
- Su, X., Zhang, Y., Liu, Y. and Holder, R.M. (2023) Outgassing and in-gassing of Na, K and Cu in lunar 74220 orange glass beads. Earth and Planetary Science Letters 602. https://doi.org/10.1016/j.epsl.2022.117924
- Discipline:
- Science
-
- Creator:
- Bressler, Alison and Blesh, Jennifer
- Description:
- This dataset contains three data files and three corresponding metadata files used in Bressler, A., and J. Blesh. 2023. A grass-legume cover crop maintains nitrogen inputs and nitrous oxide fluxes from an organic agroecosystem. Ecosphere. The file “N2O_Flux.xls” contains daily nitrous oxide data organized by replicate block, treatment, and date. The file “Soil_N.xls” contains nitrate and ammonium data organized by replicate block, treatment, and date. The file “Cover_crop_corn_soil.xls” contains baseline soil fertility characteristics, cover crop and corn biomass, nitrogen and carbon content, legume BNF, and cumulative N2O content organized by replicate block and treatment. The corresponding metadata files: “N2O_Flux_metadata.xls”, “Soil_N_metadata.xls”, and “Cover_crop_corn_soil_metadata.xls” provide detailed descriptions of all variables in each data set and any abbreviations used.
- Keyword:
- cover crops, nitrous oxide, corn, biological nitrogen fixation, and legume-grass mixtures
- Citation to related publication:
- Bressler, A., and J. Blesh. 2023. A grass-legume cover crop maintains nitrogen inputs and nitrous oxide fluxes from an organic agroecosystem. Ecosphere. 14(2): e4428. https://doi.org/10.1002/ecs2.4428
- Discipline:
- Science
-
- Creator:
- Crowell, Hayley L . , Curlis, John David, Weller, Hannah I., and Davis Rabosky, Alison R.
- Description:
- Ultraviolet (UV) wavelengths invisible to humans are primarily studied in the context of reproduction and social signaling. This narrow focus can arise from bias in taxa studied, which are often brightly colored in human-visible wavelengths. Our research describes undocumented UV color patterns across 110 diverse species of Western Hemisphere snakes and tests the hypothesized roles of reproduction versus predator avoidance in the evolution of UV coloration. Phylogenetically-informed tests of life stage, sex, and habitat showed unexpected support for the predator defense hypothesis, with pronounced differences in snake conspicuousness explained by UV coloration. UV reflectance was not predictable from any aspect of visible color pattern, suggesting high potential for transformative discoveries in other “cryptically-colored” lineages across the tree of life.
- Keyword:
- color, ecology, evolution, predators, snakes, and ultraviolet
- Citation to related publication:
- Crowell, H. L., Curlis, J. D., Weller, H. I., & Davis Rabosky, A. R. (2024). Ecological drivers of ultraviolet colour evolution in snakes. Nature Communications, 15(1), 5213. http://doi.org/10.1038/s41467-024-49506-4
- Discipline:
- Science
-
- Creator:
- George De la Rosa, Mery Vet, Patel, Dipali, McCann, Marc R., Stringer, Kathleen A., and Rosania, Gus R.
- Description:
- These data were produced from a study that employed a database strategy to identify candidate mitochondrial metabolites that could be clinically useful to identify individuals at increased risk of mitochondrial-related ADRs. The main candidate metabolite identified by the database strategy was evaluated using a mouse model of mitochondrial drug toxicity. These findings are described in our manuscript: Database Screening as a Strategy to Identify Endogenous Candidate Metabolites to Probe and Assess Mitochondrial Drug Toxicity. Data reported was supported by funding from the National Institute of General Medical Sciences (NIGMS) at the National Institutes of Health (NIH) under award numbers R01GM127787 (GRR) & R35GM136312 (KAS).
- Keyword:
- mitochondrial-realted metabolites, adverse drug reactions, and mitochondrial drug toxicity
- Discipline:
- Health Sciences
-
- Creator:
- Gable, Sydney L and Huang, Yihe
- Description:
- This dataset includes a catalog of events for the Prague, Oklahoma earthquake sequence with uncalibrated and calibrated relative magnitudes that are a product of the relative magnitude method (see Gable & Huang, submitted). Original earthquake catalog records for the combined catalog used in this analysis and the events used in the relative magnitude to absolute magnitude calibration process are a product of the following studies: Cochran, E.S., et al. (2020). Activation of optimally and unfavourably oriented faults in a uniform local stress field during the 2011 Prague, Oklahoma, sequence. Geophysical Journal International, 222(1), pp. 153-168. https://doi.org/10.1093/gji/ggaa153 Skoumal, R.J., M.R. Brudzinski, B.S. Currie, & R. Ries (2020). Temporal patterns of induced seismicity in Oklahoma revealed from multi-station template matching. Journal of Seismology, 24, pp. 921-935. https://doi.org/10.1007/s10950-019-09864-9 Sumy, D.F., et al. (2014). Observations of static Coulomb stress triggering of the November 2011 M5.7 Oklahoma earthquake sequence. Journal of Geophysical Research: Solid Earth, 119(3), 1904-1923. https://doi.org/10.1785/0120210115
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Raw Dataset includes 1801 TIF images (each 503 x 663 x 1 voxel at 0.0382276 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Reconstructed Dataset includes 1775 TIF images (each 503 x 663 x 1 voxel at 0.038228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Raw Dataset includes 2401 TIF images (each 1316 x 1285 x 1 voxel at 0.02652906 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Reconstructed Dataset includes 1471 TIF images (each 1316 x 1285 x 1 voxel at 0.026529 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Stomiiformes, Sternoptychidae, Argyropelecus aculeatus Valenciennes, 1850, 1889127527, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889127527 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Raw Dataset includes 1801 TIF images (each 1376 x 1066 x 1 voxel at 0.01759152 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Reconstructed Dataset includes 1511 TIF images (each 1376 x 1066 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Reconstructed Dataset includes 2000 TIF images (each 1423 x 622 x 1 voxel at 0.047137 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Raw Dataset includes 1801 TIF images (each 1423 x 622 x 1 voxel at 0.04713662 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Pleuronectiformes, Achiridae, Achirus lineatus (Linnaeus, 1758), 1889075287, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889075287 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Reconstructed Dataset includes 1827 TIF images (each 1439 x 1229 x 1 voxel at 0.016076 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Raw Dataset includes 1801 TIF images (each 1439 x 1229 x 1 voxel at 0.01607582 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1987 TIF images (each 683 x 585 x 1 voxel at 0.067089 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 683 x 585 x 1 voxel at 0.06708945 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 745 x 669 x 1 voxel at 0.03313194 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1982 TIF images (each 745 x 669 x 1 voxel at 0.033132 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 661 x 603 x 1 voxel at 0.082827 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 661 x 603 x 1 voxel at 0.08282655 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 665 x 474 x 1 voxel at 0.08304352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1979 TIF images (each 665 x 474 x 1 voxel at 0.083044 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 2000 TIF images (each 789 x 814 x 1 voxel at 0.041352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 789 x 814 x 1 voxel at 0.04135232 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Raw Dataset includes 2401 TIF images (each 368 x 397 x 1 voxel at 0.06675832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Reconstructed Dataset includes 1982 TIF images (each 368 x 397 x 1 voxel at 0.066758 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1899 TIF images (each 792 x 1999 x 1 voxel at 0.028030 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 792 x 1999 x 1 voxel at 0.02803018 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1825 TIF images (each 971 x 763 x 1 voxel at 0.048959 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 971 x 763 x 1 voxel at 0.04895912 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Raw Dataset includes 2001 TIF images (each 1229 x 855 x 1 voxel at 0.02452474 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Reconstructed Dataset includes 1883 TIF images (each 1229 x 855 x 1 voxel at 0.024525 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Raw Dataset includes 1801 TIF images (each 667 x 582 x 1 voxel at 0.03322767 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Reconstructed Dataset includes 2000 TIF images (each 667 x 582 x 1 voxel at 0.033228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 2000 TIF images (each 1021 x 1177 x 1 voxel at 0.068930 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 1021 x 1177 x 1 voxel at 0.06893014 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 741 x 682 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 741 x 682 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 581 x 834 x 1 voxel at 0.08030222 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 1972 TIF images (each 581 x 834 x 1 voxel at 0.080302 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
Computed tomography voxel dataset for ummz:fish:240774-Channa limbata (Cuvier, 1831)-14d_etoh-DiceCT
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 652 x 614 x 1 voxel at 0.082357 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 652 x 614 x 1 voxel at 0.08235723 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses on student attendance through the EPA’s national School Bus Rebate Program. Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the change in school district level attendance rates after vs before the 2012 through 2017 lotteries by funding selection status . We used overall district attendance rates since rates were not available for only school-bus riders.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, and School Attendance
- Citation to related publication:
- Pedde, M., Szpiro, A., Hirth, R. et al. Randomized design evidence of the attendance benefits of the EPA School Bus Rebate Program. Nat Sustain (2023). https://doi.org/10.1038/s41893-023-01088-7
- Discipline:
- Health Sciences
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Raw Dataset includes 2401 TIF images (each 937 x 607 x 1 voxel at 0.07686836 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Reconstructed Dataset includes 2000 TIF images (each 937 x 607 x 1 voxel at 0.076868 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Beryciformes, Holocentridae, Myripristis multiradiatus Günther, 1874, 1889087579, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889087579 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Reconstructed Dataset includes 1395 TIF images (each 1166 x 1597 x 1 voxel at 0.018640 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Raw Dataset includes 2401 TIF images (each 1166 x 1597 x 1 voxel at 0.01863954 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 678 x 1023 x 1 voxel at 0.05847154 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 678 x 1023 x 1 voxel at 0.058472 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1923 TIF images (each 663 x 1263 x 1 voxel at 0.027589 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 663 x 1263 x 1 voxel at 0.02758892 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 976 x 737 x 1 voxel at 0.05842386 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 976 x 737 x 1 voxel at 0.058424 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 717 x 688 x 1 voxel at 0.06149898 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1874 TIF images (each 717 x 688 x 1 voxel at 0.061499 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 2000 TIF images (each 574 x 626 x 1 voxel at 0.075148 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 574 x 626 x 1 voxel at 0.07514755 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 820 x 704 x 1 voxel at 0.039218 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 820 x 704 x 1 voxel at 0.0392176 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 703 x 808 x 1 voxel at 0.07640627 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 1912 TIF images (each 703 x 808 x 1 voxel at 0.076406 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 693 x 471 x 1 voxel at 0.040486 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 693 x 471 x 1 voxel at 0.04048587 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 745 x 780 x 1 voxel at 0.06201822 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 745 x 780 x 1 voxel at 0.062018 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1964 TIF images (each 572 x 784 x 1 voxel at 0.035928 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 572 x 784 x 1 voxel at 0.03592832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Reconstructed Dataset includes 2000 TIF images (each 554 x 759 x 1 voxel at 0.055272 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Raw Dataset includes 1801 TIF images (each 554 x 759 x 1 voxel at 0.05527194 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Raw Dataset includes 1801 TIF images (each 1353 x 1576 x 1 voxel at 0.02222504 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Reconstructed Dataset includes 1399 TIF images (each 1353 x 1576 x 1 voxel at 0.022225 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1949 TIF images (each 583 x 953 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 583 x 953 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 480 x 677 x 1 voxel at 0.082385 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 480 x 677 x 1 voxel at 0.0823851 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 501 x 454 x 1 voxel at 0.08823032 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1938 TIF images (each 501 x 454 x 1 voxel at 0.088230 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 797 x 753 x 1 voxel at 0.08151283 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 797 x 753 x 1 voxel at 0.081513 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 518 x 762 x 1 voxel at 0.040341 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 518 x 762 x 1 voxel at 0.04034065 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 709 x 798 x 1 voxel at 0.082618 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 3141 TIF images (each 709 x 798 x 1 voxel at 0.08261846 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 630 x 347 x 1 voxel at 0.04505992 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 630 x 347 x 1 voxel at 0.045060 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 521 x 643 x 1 voxel at 0.04052231 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1970 TIF images (each 521 x 643 x 1 voxel at 0.040522 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 374 x 555 x 1 voxel at 0.03162589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1729 TIF images (each 374 x 555 x 1 voxel at 0.031626 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Raw Dataset includes 1801 TIF images (each 544 x 834 x 1 voxel at 0.03868037 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Reconstructed Dataset includes 2000 TIF images (each 544 x 834 x 1 voxel at 0.038680 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Reconstructed Dataset includes 1851 TIF images (each 1221 x 1165 x 1 voxel at 0.016589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Raw Dataset includes 2401 TIF images (each 1221 x 1165 x 1 voxel at 0.01658923 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Reconstructed Dataset includes 1217 TIF images (each 1433 x 1028 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Raw Dataset includes 1801 TIF images (each 1433 x 1028 x 1 voxel at 0.01759157 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 888 x 988 x 1 voxel at 0.029451 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 888 x 988 x 1 voxel at 0.02945109 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Raw Dataset includes 1801 TIF images (each 637 x 456 x 1 voxel at 0.05305043 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Reconstructed Dataset includes 1945 TIF images (each 637 x 456 x 1 voxel at 0.053050 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Gymnotiformes, Sternopygidae, Eigenmannia viricens, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 632 x 853 x 1 voxel at 0.02187606 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1972 TIF images (each 632 x 853 x 1 voxel at 0.021876 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- Cuyler, Antonio, Carruthers, Matthew, and Imbesi, Jason
- Description:
- we conducted an emergent qualitative systematic content analysis of scholarship published in Cultural Trends, the International Journal of Cultural Policy, and the Journal of Arts Management, Law, and Society since the peer-reviewed journals’ inceptions.
- Keyword:
- content analysis, cultural policy, and oppression
- Discipline:
- Humanities and Arts
-
- Creator:
- Galaty, Michael L. and Bejko, Lorenc
- Description:
- This work contains documentation for the entire Projekti Arkeologjik i Shkodrës (PASH) data set, which has been organized into a series of collections and works in the Deep Blue Data repository to facilitate access and navigation. The data presented here accompany a two-volume research report, published by the University of Michigan Museum of Anthropological Archaeology Press (Galaty and Bejko 2023--see below).
- Keyword:
- archaeology
- Citation to related publication:
- Galaty, M. L., & Bejko, L. (Eds.). (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 1). University of Michigan Press. https://doi.org/10.3998/mpub.12201317 and Galaty, M. L., & Bejko, L. (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 2). University of Michigan Press. https://doi.org/10.3998/mpub.12208577
- Discipline:
- Humanities
-
- Creator:
- Raghani, Ravi M, Urie, Russell R, and Shea, Lonnie D
- Description:
- The IN were sampled during and after ICB and sequenced to identify gene expression signatures that correlated with sensitivity or resistance. We also analyzed gene expression at the IN prior to ICB treatment to identify markers predicting therapeutic response. Longitudinally interrogating an IN, to monitor changes associated with ICB response, presents a new opportunity to personalize care and investigate mechanisms underlying treatment resistance.
- Keyword:
- Immunotherapy resistance, Biomaterials, Metastasis, Checkpoint blockade, and Therapy monitoring
- Discipline:
- Engineering and Health Sciences
-
- Creator:
- Jenkins, G. J. and Bougher, S. W.
- Description:
- In early 2019, the Mars Atmosphere and Volatile Evolution (MAVEN) mission underwent an ~2-month aerobraking campaign, during which time the spacecraft periapsis altitude was lowered from its nominal altitude range of 140-160 km to as low as ~123 km. Excluding spacecraft walk-in/out maneuvers, accelerometer measurements were made along 272 orbits with coverage spanning Ls 340-3°, latitudes ~5-54°S, longitudes 0-360°, and Local Solar Time (LST) ~22-17 hours. In this study, we perform a diagnostic analysis of the full aerobraking data set by fitting 4-harmonic waves to mass densities. We then study the variations of these waves as a function of latitude with an emphasis on those observed previously in Mars’ thermosphere by MAVEN and other missions. Additionally, we utilize data collected during the same time period from the Mars Reconnaissance Orbiter’s Mars Climate Sounder to study the vertical propagation of waves originating from the middle atmosphere. Key results indicate that normalized wave amplitudes decrease with latitude, and this is consistent with the latitudinal structure of a diurnal Kelvin mode. We also observe that waves imprinted from the middle atmosphere show normalized amplitude growth with increasing altitude. A complete summary of data sets, analysis methodology, and scientific results is given. The purpose of this study is to add to the body of knowledge surrounding Martian atmospheric wave features and to provide further constraints for future numerical modeling and subsequent tidal mode identification.
- Keyword:
- MAVEN, Mars Thermosphere, Accelerometer Data Set, Global Data Set, and Wave Analysis of Tides
- Citation to related publication:
- Jenkins, G. A., Bougher, S. W., Lugo, R., Tolson, R. H., Zurek, R. W., Baird, D., Steele, L., Kass, D., Withers, P. (2023), MAVEN Accelerometer Observations of Thermospheric Densities during Aerobraking and Deep Dip 2: Wave Features and Connections to Upward Propagating Thermal Tides, Journal of Geophysical Research: Planets, xx, xx.
- Discipline:
- Science
-
- Creator:
- Billings, Gideon H and Johnson-Roberson, Matthew
- Description:
- UWHandles is a dataset for 6D object pose estimation in underwater fisheye images. It provides 6D pose and 2D bounding box annotations for 3 different graspable handle objects used for ROV manipulation. The dataset consists of 28 image sequences collected in natural seafloor environments with a total of 20,427 annotated frames. and Meta repository for the dataset https://github.com/gidobot/UWHandles
- Keyword:
- Deep Learning, Pose Estimation, and Underwater Vision
- Citation to related publication:
- Billings, G., & Johnson-Roberson, M. (2020). SilhoNet-fisheye: Adaptation of a ROI based object pose estimation network to monocular fisheye images. IEEE Robotics and Automation Letters, 5(3), 4241-4248.
- Discipline:
- Engineering
-
- Creator:
- Billings, Gideon H and Johnson-Roberson, Matthew
- Description:
- UWslam is a dataset for underwater stereo and hybrid monocular fisheye + stereo SLAM in natural seafloor environments. The dataset includes a spiral survey of a shallow reef captured with a diver operated stereo rig and 4 hybrid image sequences captured with a deep ocean ROV in different deep ocean environments. Ground truth pose estimates for the spiral stereo trajectory were obtained by processing the image sequence through COLMAP. Ground truth pose estimates for the hybrid sequences were obtained by distributing fiducials on the seafloor before capturing an image sequence and processing the image sequences with the ROS based TagSLAM package.
- Keyword:
- SLAM, Simultaneous Localization and Mapping, Visual Reconstruction, and Underwater
- Citation to related publication:
- G. Billings, R. Camilli and M. Johnson-Roberson, "Hybrid Visual SLAM for Underwater Vehicle Manipulator Systems," in IEEE Robotics and Automation Letters, vol. 7, no. 3, pp. 6798-6805, July 2022, doi: 10.1109/LRA.2022.3176448.
- Discipline:
- Engineering
-
- Creator:
- Walsh, Lisa L
- Description:
- Stable isotope values of carbon (δ13C) and nitrogen (δ15N) from Virginia opossum (Didelphis virginiana) guard hairs were analyzed to evaluate the ecology and winter adaptations in opossums by Dr. Lisa L. Walsh as part of her Ph.D. thesis in the Ecology and Evolutionary Biology Department. The collection of stable isotope data took place from 2017 to 2019. Guard hair was processed at the University of Michigan and analyzed by the University of New Mexico Center for Stable Isotopes (UNM-CSI, USA). Captive and wild opossums were evaluated for evidence of biannual or incomplete biannual molting, a mammalian adaptation to harsh winters. Results suggest opossums do not exhibit either winter molting strategy and that guard hairs capture the opossum’s lifetime diet (Walsh and Tucker 2021). The stable isotope values were used to test the hypothesis that a Type A generalist’s niche is positively correlated with habitat heterogeneity and to evaluate which climate variables best explained isotope values. There was a positive correlation between isotopic niche size and habitat-diversity indexes (Walsh and Tucker 2020). The δ13C values from opossums in the Midwest and Northeast to test whether opossums rely on anthropogenic trash to survive extreme winters. There was no significant relationship between δ13C and winter variables, but there was a significant increase in variance of Midwest opossums’ δ13C after the 1970 corn agricultural boom (Walsh and Tucker 2023).
- Keyword:
- stable isotope, Virginia opossum, mesopredator, ecology, and mammal
- Citation to related publication:
- Walsh, L.L. and P.K. Tucker. 2020. Habitat heterogeneity is correlated with isotopic niche breadth across the range of a mammalian generalist mesopredator. Ecosphere, 11(12): e03314. https://doi.org/10.1002/ecs2.3314, Walsh, L.L. and P.K. Tucker. 2021. Stable isotope values suggest opossums (Didelphis virginiana) at their northern edge do not seasonally molt. Northeastern Naturalist, 28(1): 1-8. https://doi.org/10.1656/045.028.0101, and Walsh, L.L., and P.K. Tucker. 2023. Evaluating anthropogenic influence on a mesopredator: Opossum (Didelphis virginiana) isotope values influenced by corn agriculture more than urbanization. Canadian Journal of Zoology, 101: https://doi.org/10.1139/cjz-2021-0172.
- Discipline:
- Science
-
- Creator:
- Galaty, Michael
- Description:
- Raw Sr isotope and aDNA data are archived as .xlsx files. The Sr data are reported as ratios of 87Sr to 86Sr. and Chapter linked to: Twenty
- Keyword:
- archaeology
- Discipline:
- Science and Humanities
-
- Creator:
- Galaty, Michael
- Description:
- This work consists of an .xlsx database file. and Chapter linked to: Nineteen
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Galaty, Michael
- Description:
- Record contains a database of chipped stones, stored as an Excel file. and Chapter linked to: Nine
- Keyword:
- archaeology
- Discipline:
- Science and Humanities
-
- Creator:
- Galaty, Michael
- Description:
- This Work includes a .csv database file and .jpg photos of artifacts. Artifact photos are preceded by photos of artifact tags, labeled with descriptive information. Also included are portable x-ray florescence (PXRF) spectroscopic data and photomicrographs. and Descriptions/data and photos of grinding stones are in Small Finds record, https://doi.org/10.7302/5j43-mc03. Chapter linked to: Sixteen
- Keyword:
- archaeology
- Discipline:
- Science and Humanities
-
- Creator:
- Galaty, Michael
- Description:
- This record includes photos (JPGs) and drawings (PDF of scans of originals) of small finds, e.g., glass; coins, spindle whorls, loom weights, metal artifacts; bullets; nails; etc., as well as a list of the drawings with descriptions (PDF file) and a small finds database (.CSV). The database includes all small finds collected and analyzed by PASH, although not all small finds were drawn and photographed. Grinding stones and chipped stone are located in separate records. and Chapter linked to: Seventeen
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Bellile, Emily L, Taylor, Jeremy MG, and Wolf, Gregory T
- Description:
- The University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) included an epidemiology project that approached every previously untreated adult head and neck squamous carcinoma (HNSCC) patient evaluated in the multidisciplinary Head and Neck Oncology Program of the University of Michigan (UM; Ann Arbor, MI) Comprehensive Cancer Center for participation in our longitudinal epidemiology study. This analytic dataset includes the most commonly requested covariates and outcome variables for survival analysis of this cohort of HNSCC patients. Data cleaning and creation of this analysis dataset was performed with SAS software v 9.3 (Carey,NC) by a biostatistician supporting multiple projects in the University of Michigan’s Head and Neck Specialized Program of Research Excellence (SPORE) and is available in RedCap for UM investigators to join with discipline specific data collected on the same cohort through a de-identified ID link.
- Keyword:
- Head and Neck Cancer, HNSCC, Squamous Cell Cancer, Epidemiology, Head and Neck Specialized Program of Research Excellence (SPORE). , Cancer, Prognosis, and Survival Analysis
- Citation to related publication:
- Cigarette use, comorbidities, and prognosis in a prospective head and neck squamous cell carcinoma population. Peterson LA, Bellile EL, Wolf GT, Virani S, Shuman AG, Taylor JM, Rozek LS; University of Michigan Head and Neck Specialized Program of Research Excellence Program. Head Neck. 2016 Dec;38(12):1810-1820. doi: 10.1002/hed.24515. Epub 2016 Jul 19. PMID: 27432208. , Development and Assessment of a Model for Predicting Individualized Outcomes in Patients With Oropharyngeal Cancer. Beesley LJ, Shuman AG, Mierzwa ML, Bellile EL, Rosen BS, Casper KA, Ibrahim M, Dermody SM, Wolf GT, Chinn SB, Spector ME, Baatenburg de Jong RJ, Dronkers EAC, Taylor JMG. JAMA Netw Open. 2021 Aug 2;4(8):e2120055. doi: 10.1001/jamanetworkopen.2021.20055. PMID: 34369988., Amlani, L; Bellile, E; Spector, M; Smith, J; Brenner, C; Rozek, L; Nguyen, A; Zarins, K; Thomas, D; McHugh, J; Taylor, J; Wolf, GT. Expression of p53 and prognosis in patients with head and neck squamous cell carcinoma (HNSCC); Int J Cancer Clin Res 2019, 6:122. DOI: 10.23937/2378-3419/1410122., and Spector ME, Bellile E, Amlani L, Zarins K, Smith J, Brenner JC, Rozek L, Nguyen A, Thomas D, McHugh JB, Taylor JMG, Wolf GT; University of Michigan Head and Neck SPORE Program. Prognostic Value of Tumor-Infiltrating Lymphocytes in Head and Neck Squamous Cell Carcinoma. JAMA Otolaryngol Head Neck Surg. 2019 Nov 1;145(11):1012-1019. doi: 10.1001/jamaoto.2019.2427. PMID: 31486841; PMCID: PMC6735419.
- Discipline:
- Science and Health Sciences
-
- Creator:
- Galaty, Michael
- Description:
- This work includes a .csv database, PDF scans of artifact drawings and .jpg photos. Artifact photos are accompanied by photos of artifact bags, labeled with descriptive information about the artifact, as well as photomicrographs. Work also includes raw analytical data--laser ablation – inductively-coupled plasma – mass spectroscopy (LA-ICP-MS) and petrographic data. and Chapters linked to: Ten, Eleven, Twelve, Thirteen, Fourteen, Fifteen
- Keyword:
- archaeology
- Discipline:
- Science and Humanities
-
- Creator:
- Galaty, Michael
- Description:
- This work contains data generated by the survey of all mounds in the study region. and Chapter linked to: Eight
- Discipline:
- Humanities and Science
-
- Creator:
- Galaty, Michael
- Description:
- These data relate to PASH’s excavations at tumuli 052. This record contains documents (excavation forms, notes accompanied by a typed transcription, drawings), 144 photos and a photolog, seven 3D digital elevation model (DEM) images (.jpgs only), and files needed to project GPR data from T052 and Chapter linked to: Eight
- Keyword:
- archaeology
- Discipline:
- Humanities and Science
-
- Creator:
- Galaty, Michael
- Description:
- These data relate to PASH’s excavations at tumuli 085. This record contains scanned documents (excavation forms, drawings, and notes--though these last are difficult to read), 34 .jpg excavation photos (no photolog), and time slice images of GPR data as a .pdf (raw geophysical data for this survey are not available). and Chapter linked to: Eight
- Keyword:
- archaeology
- Discipline:
- Humanities and Science