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- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:157545 (Sorex cinereus cinereus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1130 x 900 x 1 voxel at 0.03467086 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:157545 (Sorex cinereus cinereus) - WholeBody. Reconstructed Dataset includes 1841 TIF images (each 1130 x 900 x 1 voxel at 0.034671 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Sorex cinereus cinereus, 1987267451, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987267451
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:157599 (Rattus rattus) - WholeBody. Raw Dataset includes 1601 TIF images (each 580 x 971 x 1 voxel at 0.08124778 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:157599 (Rattus rattus) - WholeBody. Reconstructed Dataset includes 1946 TIF images (each 580 x 971 x 1 voxel at 0.081248 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Rattus rattus, 1987291273, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987291273
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:163615 (Megaderma spasma SPASMA) - WholeBody. Raw Dataset includes 1601 TIF images (each 682 x 965 x 1 voxel at 0.04711877 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:163615 (Megaderma spasma SPASMA) - WholeBody. Reconstructed Dataset includes 1945 TIF images (each 682 x 965 x 1 voxel at 0.047119 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Megadermatidae, Megaderma spasma SPASMA, 1987289689, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987289689
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:165569 (Eptesicus fuscus FUSCUS) - WholeBody. Raw Dataset includes 3141 TIF images (each 844 x 1193 x 1 voxel at 0.03643175 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:165569 (Eptesicus fuscus FUSCUS) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 844 x 1193 x 1 voxel at 0.036432 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987336335, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987336335
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:165569 (Eptesicus fuscus FUSCUS) - Skull. Raw Dataset includes 2401 TIF images (each 1380 x 1463 x 1 voxel at 0.01761623 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:165569 (Eptesicus fuscus FUSCUS) - Skull. Reconstructed Dataset includes 1756 TIF images (each 1380 x 1463 x 1 voxel at 0.017616 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987336335, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987336335
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:168143 (Octodon degus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1137 x 2000 x 1 voxel at 0.02689398 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:168143 (Octodon degus) - WholeBody. Reconstructed Dataset includes 1208 TIF images (each 1137 x 2000 x 1 voxel at 0.026894 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Octodontidae, Octodon degus, 1987280727, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987280727
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:168158 (Setonix brachyurus) - WholeBody. Raw Dataset includes 1601 TIF images (each 998 x 1824 x 1 voxel at 0.04686896 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:168158 (Setonix brachyurus) - WholeBody. Reconstructed Dataset includes 945 TIF images (each 998 x 1824 x 1 voxel at 0.046869 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Diprotodontia, Macropodidae, Setonix brachyurus, 1987277779, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987277779
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:174732 (Microgale talazaci) - WholeBody. Raw Dataset includes 1601 TIF images (each 648 x 977 x 1 voxel at 0.05492299 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:174732 (Microgale talazaci) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 648 x 977 x 1 voxel at 0.054923 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Afrosoricida, Tenrecidae, Microgale talazaci, 1987232883, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987232883
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:175646 (Furipterus horrens) - WholeBody. Raw Dataset includes 3141 TIF images (each 571 x 1031 x 1 voxel at 0.02874254 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:175646 (Furipterus horrens) - WholeBody. Reconstructed Dataset includes 1969 TIF images (each 571 x 1031 x 1 voxel at 0.028743 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Furipteridae, Furipterus horrens, 1987316226, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987316226
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:175646 (Furipterus horrens) - Skull. Raw Dataset includes 2401 TIF images (each 1389 x 913 x 1 voxel at 0.01404662 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:175646 (Furipterus horrens) - Skull. Reconstructed Dataset includes 1921 TIF images (each 1389 x 913 x 1 voxel at 0.014047 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Furipteridae, Furipterus horrens, 1987316226, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987316226
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:60017 (Spermophilus lateralis LATERALIS) - WholeBody. Raw Dataset includes 1601 TIF images (each 924 x 1358 x 1 voxel at 0.07896351 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:60017 (Spermophilus lateralis LATERALIS) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 924 x 1358 x 1 voxel at 0.078964 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Sciuridae, Spermophilus lateralis LATERALIS, 1987342729, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987342729
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:60547 (Oreamnos americanus missoulae) - WholeBody. Raw Dataset includes 1601 TIF images (each 1623 x 1714 x 1 voxel at 0.1214167 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:60547 (Oreamnos americanus missoulae) - WholeBody. Reconstructed Dataset includes 934 TIF images (each 1623 x 1714 x 1 voxel at 0.121417 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Bovidae, Oreamnos americanus missoulae, 1987342965, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987342965
- Discipline:
- Science
-
Computed tomography voxel dataset for ummz:mammals:75779-Orthogeomys hispidus yucatanensis-WholeBody
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:75779 (Orthogeomys hispidus yucatanensis) - WholeBody. Raw Dataset includes 1601 TIF images (each 1299 x 1574 x 1 voxel at 0.03675892 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:75779 (Orthogeomys hispidus yucatanensis) - WholeBody. Reconstructed Dataset includes 1530 TIF images (each 1299 x 1574 x 1 voxel at 0.036759 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Geomyidae, Orthogeomys hispidus yucatanensis, 1987307596, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987307596
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:81079 (Ratufa indica INDICA) - WholeBody. Raw Dataset includes 1601 TIF images (each 1206 x 1801 x 1 voxel at 0.04272951 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:81079 (Ratufa indica INDICA) - WholeBody. Reconstructed Dataset includes 1178 TIF images (each 1206 x 1801 x 1 voxel at 0.042730 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Sciuridae, Ratufa indica INDICA, 1987306841, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987306841
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:83575 (Neofiber ALLENI ALLENI) - WholeBody. Raw Dataset includes 1601 TIF images (each 1524 x 1820 x 1 voxel at 0.04050475 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:83575 (Neofiber ALLENI ALLENI) - WholeBody. Reconstructed Dataset includes 973 TIF images (each 1524 x 1820 x 1 voxel at 0.040505 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Neofiber ALLENI ALLENI, 1987270127, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987270127
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:84222 (Bathyergus suillus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1743 x 1321 x 1 voxel at 0.04045931 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:84222 (Bathyergus suillus) - WholeBody. Reconstructed Dataset includes 1103 TIF images (each 1743 x 1321 x 1 voxel at 0.040459 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Bathyergidae, Bathyergus suillus, 1987355723, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987355723
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:89488 (Zygogeomys trichopus trichopus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1864 x 1511 x 1 voxel at 0.04623825 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:89488 (Zygogeomys trichopus trichopus) - WholeBody. Reconstructed Dataset includes 862 TIF images (each 1864 x 1511 x 1 voxel at 0.046238 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Geomyidae, Zygogeomys trichopus trichopus, 1987349052, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987349052
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:93467 (Eptesicus fuscus FUSCUS) - WholeBody. Raw Dataset includes 3141 TIF images (each 1084 x 1698 x 1 voxel at 0.02762844 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:93467 (Eptesicus fuscus FUSCUS) - WholeBody. Reconstructed Dataset includes 1693 TIF images (each 1084 x 1698 x 1 voxel at 0.027628 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987298677, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987298677
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:93467 (Eptesicus fuscus FUSCUS) - Skull. Raw Dataset includes 2401 TIF images (each 1313 x 1543 x 1 voxel at 0.01727251 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:93467 (Eptesicus fuscus FUSCUS) - Skull. Reconstructed Dataset includes 1771 TIF images (each 1313 x 1543 x 1 voxel at 0.017273 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987298677, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987298677
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:93468 (Eptesicus fuscus FUSCUS) - WholeBody. Raw Dataset includes 3141 TIF images (each 1133 x 773 x 1 voxel at 0.03269548 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:93468 (Eptesicus fuscus FUSCUS) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 1133 x 773 x 1 voxel at 0.032695 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987277419, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987277419
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:93468 (Eptesicus fuscus FUSCUS) - Skull. Raw Dataset includes 2401 TIF images (each 1806 x 1420 x 1 voxel at 0.01761623 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:93468 (Eptesicus fuscus FUSCUS) - Skull. Reconstructed Dataset includes 1742 TIF images (each 1806 x 1420 x 1 voxel at 0.017616 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Chiroptera, Vespertilionidae, Eptesicus fuscus FUSCUS, 1987277419, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987277419
- Discipline:
- Science
-
- Creator:
- Shah, Bhavarth
- Description:
- The three approaches used three distinct datasets named as follows: Historicalwater_levels.csv, Historical_Precipitation.csv, and Bayesian Statistical dataset.csv. These files are accessible using Microsoft Office or similar software. The machine learning models are developed in Jupyter Notebook (.ipynb) files, named according to the datasets they utilize. However, for the third approach, the models are named Random Forest, LSTM Model Base, and Multivariate LSTM Models. More details are available on the Shah_Bhavarth_Readme.txt. These notebooks can be accessed through Python, Project Jupyter, or Google Colab, and dependencies include libraries such as Pandas, NumPy, Matplotlib, Scikit-learn, Keras, and TensorFlow. The supplementary material also includes Excel files for stage-curve calculations and diversions, named Water_levels_Stage_Curve_Calculations1970-2018.xlsx and Diversions_calculation.xlsx, respectively.
- Keyword:
- Machine learning, Forecasting, Water levels, Mono lake, and Hydrology
- Citation to related publication:
- Shah, Bhavarth. 2024. "Mono Lake Water Levels Forecasting Using Machine Learning." Master’s thesis, University of Michigan, School for Environment and Sustainability. ORCID iD: 0000-0002-2391-8610. https://dx.doi.org/10.7302/22659
- Discipline:
- Science and Engineering
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:85387 (Phloeomys cumingi) - Skull. Raw Dataset includes 1601 TIF images (each 1705 x 1942 x 1 voxel at 0.05012207 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:85387 (Phloeomys cumingi) - Skull. Reconstructed Dataset includes 689 TIF images (each 1705 x 1942 x 1 voxel at 0.050122 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Phloeomys cumingi, 1987291910, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987291910
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:39503 (Malacomys longipes LONGIPES) - Skull. Raw Dataset includes 1601 TIF images (each 908 x 1930 x 1 voxel at 0.02302037 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:39503 (Malacomys longipes LONGIPES) - Skull. Reconstructed Dataset includes 860 TIF images (each 908 x 1930 x 1 voxel at 0.023020 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Malacomys longipes LONGIPES, 1987272816, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987272816
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:160431 (Batomys salomonseni) - Skull. Raw Dataset includes 1601 TIF images (each 1004 x 1879 x 1 voxel at 0.02251549 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:160431 (Batomys salomonseni) - Skull. Reconstructed Dataset includes 1112 TIF images (each 1004 x 1879 x 1 voxel at 0.022515 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Batomys salomonseni, 1987336404, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987336404
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:125959 (Thaptomys NIGRITA) - Skull. Raw Dataset includes 1601 TIF images (each 1286 x 1334 x 1 voxel at 0.02079286 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:125959 (Thaptomys NIGRITA) - Skull. Reconstructed Dataset includes 651 TIF images (each 1286 x 1334 x 1 voxel at 0.020793 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Thaptomys NIGRITA, 1987300465, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987300465
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:125187 (Transandinomys BOLIVARIS RIVULARIS) - Skull. Raw Dataset includes 1601 TIF images (each 1657 x 1571 x 1 voxel at 0.02022166 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:125187 (Transandinomys BOLIVARIS RIVULARIS) - Skull. Reconstructed Dataset includes 681 TIF images (each 1657 x 1571 x 1 voxel at 0.020222 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Transandinomys BOLIVARIS RIVULARIS, 1987252285, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987252285
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:118233 (Rheomys THOMASI CHIAPENSIS) - Skull. Raw Dataset includes 1601 TIF images (each 1679 x 1544 x 1 voxel at 0.02253268 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:118233 (Rheomys THOMASI CHIAPENSIS) - Skull. Reconstructed Dataset includes 700 TIF images (each 1679 x 1544 x 1 voxel at 0.022533 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Rheomys THOMASI CHIAPENSIS, 1987243675, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987243675
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:113447 (Micaelamys NAMAQUENSIS ARBORARIUS) - Skull. Raw Dataset includes 1601 TIF images (each 872 x 1576 x 1 voxel at 0.02022166 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:113447 (Micaelamys NAMAQUENSIS ARBORARIUS) - Skull. Reconstructed Dataset includes 865 TIF images (each 872 x 1576 x 1 voxel at 0.020222 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Micaelamys NAMAQUENSIS ARBORARIUS, 1987353686, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987353686
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:113430 (Thallomys nigricauda DAMARENSIS) - Skull. Raw Dataset includes 1601 TIF images (each 1445 x 1806 x 1 voxel at 0.02033402 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:113430 (Thallomys nigricauda DAMARENSIS) - Skull. Reconstructed Dataset includes 802 TIF images (each 1445 x 1806 x 1 voxel at 0.020334 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Thallomys nigricauda DAMARENSIS, 1987323338, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987323338
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:110520 (Megasorex gigas) - Skull. Raw Dataset includes 1601 TIF images (each 1238 x 1258 x 1 voxel at 0.0200159 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:110520 (Megasorex gigas) - Skull. Reconstructed Dataset includes 577 TIF images (each 1238 x 1258 x 1 voxel at 0.020016 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Soricomorpha, Soricidae, Megasorex gigas, 1987244610, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987244610
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:102270 (Lemniscomys striatus) - Skull. Raw Dataset includes 1601 TIF images (each 1439 x 1527 x 1 voxel at 0.02079286 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:102270 (Lemniscomys striatus) - Skull. Reconstructed Dataset includes 752 TIF images (each 1439 x 1527 x 1 voxel at 0.020793 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Muridae, Lemniscomys striatus, 1987327157, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987327157
- Discipline:
- Science
-
- Creator:
- Ali, Hashim, Subramani, Surya , Sudhir, Shefali , Varahamurthy, Raksha , and Malik, Hafiz
- Description:
- Voice-cloning (VC) systems have seen an exceptional increase in the realism of synthesized speech in recent years. The high quality of synthesized speech and the availability of low-cost VC services have given rise to many potential abuses of this technology such as online smearing campaigns and dissemination of fabricated information etc. A number of detection methodologies have been proposed over the years that can detect voice spoofs with reasonably good accuracy. However, these methodologies are mostly evaluated on clean audio databases, such as Asvspoof 2019. This research aims to evaluate state-of-the-art (SOTA) Audio Spoof Detection approaches in the presence of laundering attacks. In that regard, a new laundering attack database, called ASVspoof Laundering Database, is created. This database is based on the ASVspoof 2019 LA eval database comprising a total of 1388.22 hours of audio recordings. Seven SOTA audio spoof detection approaches are evaluated on this laundered database. The results indicate that SOTA systems perform poorly in the presence of aggressive laundering attacks, especially reverberation and additive noise attacks. This suggests the need for robust audio spoof detection.
- Keyword:
- Audio Forensics, Audio Antispoofing, Audio Deepfakes, ASVSpoof, and Machine Learning
- Discipline:
- Engineering
-
Sanajeh indicus micro Computed Tomography (CT) data
User Collection- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- This collection includes computed tomography (CT) scans of the cranial remains of Sanajeh indicus, a Late Cretaceous snake from Gujarat, India. In addition to the holotype (described by Wilson et al., 2010), a referred specimen (Zaher et al., 2022) has been collected from Dholi Dungri. The holotype includes a 'cranial block' (GSI/GC/2903) and the referred specimen also includes a partial skull (GSI/GC/DD4). Both holotypic and referred specimens are housed in Geological Survey of India Palaeontology Division, Central Region in Nagpur, India. For assistance with access, please contact Dhananjay Mohabey ( dinomohabey@yahoo.com) or Bandana Samant ( bandanabhu@gmail.com). Casts of selected elements of Sanajeh indicus are available at the University of Michigan Museum of Paleontology.
- Discipline:
- Science
3Works -
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- Specimen GSI/GC/2903 is the 'cranial block' of the holotype of Sanajeh indicus. This scan contains part of GSI/GC/2903, the mandible, which includes a well-preserved dentary. The specimen was collected from Late Cretaceous-aged sediments near the village of Dholi Dungri, Gujarat, India. The specimen is housed in Geological Survey of India Palaeontology Division, Central Region, Nagpur, India. For assistance with access, please contact Dhananjay Mohabey ( dinomohabey@yahoo.com) or Bandana Samant ( bandanabhu@gmail.com). Casts of this and other elements of Sanajeh are available at the University of Michigan Museum of Paleontology.
- Keyword:
- India snake Cretaceous Maastrichtian Gondwana paleontology
- Citation to related publication:
- Wilson, J. A., D. M. Mohabey, S. E. Peters, and J. J. Head 2010. Predation on hatchling dinosaurs by a new snake from the Late Cretaceous of India. PLoS Biology 8: 1–5. and Zaher, H., D. M. Mohabey, F. Grazziotin, and J. A. Wilson Mantilla. 2023. A Cretaceous stem snake with an ossified upper temporal bar and the origin of wide-gape feeding. Zoological Journal of the Linnean Society 197:656–697. https://doi.org/10.1093/zoolinnean/zlac001.
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- Specimen GSI/GC/DD4 is a posterior portion of the skull (comprising a partial braincase and skull roof), a partial right mandible, and right pterygoid of a snake referred to the species Sanajeh indicus. The specimen was collected from Late Cretaceous-aged sediments near the village of Dholi Dungri, Gujarat, India. The specimen is housed in Geological Survey of India Palaeontology Division, Central Region, Nagpur, India. For assistance with access, please contact Dhananjay Mohabey ( dinomohabey@yahoo.com) or Bandana Samant ( bandanabhu@gmail.com). Casts of this and other elements of Sanajeh are available at the University of Michigan Museum of Paleontology.
- Keyword:
- India snake Cretaceous Maastrichtian Gondwana paleontology
- Citation to related publication:
- Wilson, J. A., D. M. Mohabey, S. E. Peters, and J. J. Head 2010. Predation on hatchling dinosaurs by a new snake from the Late Cretaceous of India. PLoS Biology 8: 1–5. and Zaher, H., D. M. Mohabey, F. Grazziotin, and J. A. Wilson Mantilla. 2023. A Cretaceous stem snake with an ossified upper temporal bar and the origin of wide-gape feeding. Zoological Journal of the Linnean Society 197:656–697. https://doi.org/10.1093/zoolinnean/zlac001.
- Discipline:
- Science
-
- Creator:
- Giri, Bapun, Kinsky, Nathaniel, and Diba, Kamran
- Description:
- The research that produced this data tested how sleep loss impacted the phenomena of reactivation and replay, which occurs when recently-learned information is reactivated/replayed during post-learning sleep/rest.
- Keyword:
- Hippocampus, Memory, Sleep, Sleep Deprivation, and Electrophysiology
- Citation to related publication:
- Giri, B., Kinsky, N.R., Kaya, U., Maboudi, K., Abel, T., Diba, K. (2024). Sleep loss diminishes hippocampal reactivation and replay. Nature, (2024). https://doi.org/10.1038/s41586-024-07538-2
- Discipline:
- Science
-
- Creator:
- Hill, Shannon C.
- Description:
- This dataset represents a theta aurora case study in which we simulated a specific theta aurora event observed by IMAGE spacecraft on 15 May 2005. The IMAGE observations and the Wind solar wind observations can be found via cdaweb. We simulate eight hours of the event with SWMF Geospace on the Great Lakes HPC cluster (15 May 2005 0020 UT - 0820 UT). We use the log output files to plot the simulation SYM-H and AL indices using a python script. We use the IDL output files to plot the IE simulation results - we focus on timesteps 0531 UT, 0539 UT, and 0602 UT - using the same python script. The BATSRUS portion (MHD) of the simulation framework produces 3D output files (extension .dat) in ascii. We use Tecplot 360 2021 R2 preplot script to convert the 3D output files into binary (extension .plt) for analysis. We use Tecplot 360 2021 R2 software to view the 3D output files in the Tecplot 360 2021 R2 GUI. We focus the analysis of the 3D output files on timesteps 0531 UT and 0602 UT. We use a python script to extract information from the 3D output files and plot in 2D with the IE data.
- Keyword:
- magnetosphere, aurora, and MHD simulation
- Citation to related publication:
- https://doi.org/10.1029/2023GL108002
- Discipline:
- Science
-
- Creator:
- Ma, Sicong and Keane, Sarah
- Description:
- These files are the original data for the publication of 'Use of steric blocking antisense oligonucleotides for the targeted inhibition of junction containing precursor microRNAs': https://doi.org/10.1101/2024.04.08.588531. This dataset contains the original gel image files for the processing assay results, luciferase data readout, and the original data file for qPCR results reported in the publication.
- Citation to related publication:
- Use of steric blocking antisense oligonucleotides for the targeted inhibition of junction containing precursor microRNAs Sicong Ma, Samantha A. Howden, Sarah C. Keane bioRxiv 2024.04.08.588531; doi: https://doi.org/10.1101/2024.04.08.588531
- Discipline:
- Science
-
- Creator:
- Kort, Eric A, Plant, Genevieve, and Dacic, Natasha
- Description:
- As part of the Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) project, in 2022 an aircraft platform sampled atmospheric concentrations of nitrous oxide (N2O) in the agriculture regions of Iowa. Vertical profiles were conducted on each flight to capture the vertical structure and mixing depths of the atmosphere. The data files contain the merged data for each individual flight day.
- Keyword:
- Greenhouse Gases, Nitrous Oxide, and Agricultural soils
- Citation to related publication:
- Airborne measurements reveal high spatiotemporal variation and the heavy-tail characteristic of nitrous oxide emissions in Iowa" by Natasha Dacic, Genevieve Plant, and Eric A Kort. Journal of Geophysical Research: Atmospheres. Submitted. and 2021 dataset: Kort, E. A., Plant, G., Dacic, N. (2022). Aircraft Data (2021) for Measurement of Agriculture Illuminating farm-Zone Emissions of N2O (MAIZE) [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/0jvh-0c91
- Discipline:
- Science
-
- Creator:
- Wilson Mantilla, Jeffrey A.
- Description:
- Specimen GSI/GC/2903 is the 'cranial block' of the holotype of Sanajeh indicus. The scan includes part of GSI/GC/2903, including the nearly complete braincase (a partial parietal and frontal, prootics, otooccipitals, supraoccipital, supratemporal, basioccipital, and parabasisphenoid). The specimen was collected from Late Cretaceous-aged sediments near the village of Dholi Dungri, Gujarat, India. The specimen is housed in Geological Survey of India Palaeontology Division, Central Region, Nagpur, India. For assistance with access, please contact Dhananjay Mohabey ( dinomohabey@yahoo.com) or Bandana Samant ( bandanabhu@gmail.com). Casts of this and other elements of Sanajeh are available at the University of Michigan Museum of Paleontology. The specimen was collected under the auspices of a Joint Collaborative Programme through a Memorandum of Understanding involving the Geological Survey of India (Government of India, Ministry of Mines) and the University of Michigan Museum of Paleontology.
- Keyword:
- India snake Cretaceous Maastrichtian Gondwana paleontology
- Citation to related publication:
- Wilson, J. A., D. M. Mohabey, S. E. Peters, and J. J. Head 2010. Predation on hatchling dinosaurs by a new snake from the Late Cretaceous of India. PLoS Biology 8: 1–5. and Zaher, H., D. M. Mohabey, F. Grazziotin, and J. A. Wilson Mantilla. 2023. A Cretaceous stem snake with an ossified upper temporal bar and the origin of wide-gape feeding. Zoological Journal of the Linnean Society 197:656–697. https://doi.org/10.1093/zoolinnean/zlac001.
- Discipline:
- Science
-
- Creator:
- Lehman, John T
- Description:
- The research was directed at the trophic dynamics, food web structure, and secondary production of lower food web members of the Great Lakes ecosystem. It documented species invasion of the upper Great Lakes by the Eurasian invertebrate predator Bythotrephes, commonly called the spiny water flea.
- Keyword:
- Invasive Species, Limnology, Trophic Dynamics, Zooplankton, Water Chemistry, Secondary Production, Lake Erie, Lake Huron, Lake Michigan, and Lake Superior
- Citation to related publication:
- Burgess, S., E.W. Jackson, L. Schwarzman, N. Gezon, and J.T. Lehman. 2015. Improved estimates of calanoid copepod biomass in the St. Lawrence Great Lakes. Journal of Great Lakes Research 41: 484-491., Doubek, J.P. and J.T. Lehman. 2014. Historical trophic position of Limnocalanus macrurus in Lake Michigan. Journal of Great Lakes Research 40: 1027-1032., Jackson, E.W., J.P. Doubek, J.S. Schaeffer, and J.T. Lehman. 2013. Historical and Recent Biomass and Food Web Relations of Limnocalanus in Lake Huron. Journal of Great Lakes Research 39: 404-408., Doubek, J. P. and J.T. Lehman. 2011. Historical biomass of Limnocalanus in Lake Michigan. Journal of Great Lakes Research 37: 159-164., Sullivan, C. and J.T. Lehman. 1998. Character variation and evidence for spine length selection in the invertebrate predator Bythotrephes (Crustacea: Cladocera) from Lakes Michigan, Huron, and Erie. Arch. Hydrobiol. 142: 35-52., Bilkovic, D.M. and J.T. Lehman. 1997. Lipid content and size variation of Bythotrephes (Cladocera: Cercopagidae) from Lakes Erie, Huron and Michigan. J. Great Lakes Research 23: 149-159., Lehman, J.T., D.M. Bilkovic, and C. Sullivan. 1997. Predicting development, metabolism, and secondary production for the invertebrate predator Bythotrephes. Freshwater Biology 38:343-352., Lehman, J.T. and D.A. Lehman. 1996. Status of the non-indigenous invertebrate predator Bythotrephes cederstroemi (Crustacea: Cladocera) in Lakes Erie, Huron, and Michigan. Proc. Symp. on non-indigenous species in Western Aquatic Ecosystems. Portland State Univ. Lakes and Reservoirs Program Publication No. 96-8: 7-14. , Branstrator, D.K. and J.T. Lehman. 1996. Evidence for juvenile fish predation on Bythotrephes cederstroemi in Lake Michigan. J. Great Lakes Research 22: 917-924., Lehman, J.T. and D.K. Branstrator 1996. Predicting assimilation and development rates of invertebrate predators. J. Great Lakes Research 22: 930-934., Lehman, J.T. and D.K. Branstrator. 1995. A model for growth, development, bioenergetics and diet selection by the invertebrate predator Bythotrephes cederstroemi. J. Great Lakes Research 21: 610-619., Burkhardt, S. and J.T. Lehman. 1994. Prey consumption and predatory effects of an invertebrate predator (Bythotrephes: Cladocera, Cercopagidae) based on phosphorus budgets. Limnol. Oceanogr. 39: 1007-1019., Lehman, J.T. and C. Caceres. 1993. Food web responses to species invasion by a predatory invertebrate: Bythotrephes in Lake Michigan. Limnology and Oceanography 37: 879-891., Branstrator, D.K. and J.T. Lehman. 1991. Invertebrate predation in Lake Michigan: Regulation of Bosmina longirostris by Leptodora kindti. Limnology and Oceanography 36: 483-495., Lehman, J.T. 1991. Causes and consequences of cladoceran dynamics in Lake Michigan: Implications of species invasion by Bythotrephes. Journal of Great Lakes Research 17: 437-445., Lehman, J.T., J.A. Bowers, R.W. Gensemer, G.J. Warren, and D.K. Branstrator. 1990. Mysis relicta in Lake Michigan: Abundances and relationships with their potential prey, Daphnia. Canadian J. Fisheries and Aquatic Sciences 47: 977-983., Lehman, J.T. and C.D. Sandgren. 1990. Trophic dynamics of Lake Michigan: Response of algal production to changes in the zooplankton community. Verh. Internat. Verein. Limnol. 24: 397-400., Sandgren, C.D. and J.T. Lehman. 1990. Response of chlorophyll a, phytoplankton, and microzooplankton to the invasion of Lake Michigan by Bythotrephes. Verh. Internat. Verein. Limnol. 24: 386-392., Lehman, J.T. 1988. Algal biomass unaltered by food web changes in Lake Michigan. Nature 332: 537-538., Warren, G.J. and J.T. Lehman. 1988. Young-of-the-year Coregonus hoyi in Lake Michigan: Prey selection and influence on the zooplankton community. Journal of Great Lakes Research 14: 420-426., Dorazio, R.M., J.A. Bowers, and J.T. Lehman. 1987. Food-web manipulations influence grazer control of phytoplankton growth rates in Lake Michigan. Journal of Plankton Research 9: 891-899., and Lehman, J.T. 1987. Palearctic predator invades North American Great Lakes. Oecologia 74: 478-480.
- Discipline:
- Science
-
- Creator:
- Watkinson, Charles, Cheng, Lauretta, Lam, Michelle, Lord, Jacklyn, Heaney, Kate, and Warren, John
- Description:
- The study that produced this corpus was conducted by a joint Task Force on Career Progression charged by the Association of University Presses and Society for Scholarly Publishing in January 2022, and strengthened by the addition of the Association of Learned Professional and Scholarly Publishers in 2023. The goal of the Career Progression Task Force’s job classification project was to develop a dataset of job descriptions that identify typical skills and responsibilities associated with various roles in publishing, analysing these descriptions to elucidate the skills and qualifications needed for the jobs and career advancement and disseminate the results in a way that is useful to employers and employees alike. The work of the Task Force was made possible by the doctoral internship program at the University of Michigan's Rackham Graduate School, which supported the involvement of Michelle Lam and Lauretta Cheng. The project also involved master’s degree students at George Washington University and the University of Michigan. and In total, the corpus contained 1089 unique job description texts. A wide range/variety of positions (n=666) across functional areas were represented in the corpus. The majority of the texts came from publicly available job postings. This form of text is created to advertise positions and is typically neither as detailed nor as objective as internal position descriptions, which were contributed either individually or as a group from a particular publisher.
- Keyword:
- Publishing, Careers, Job Descriptions, Position Descriptions, and Career Progression
- Citation to related publication:
- Cheng, L., Heaney, K., Lam, M., Lord, J., Warren, J., Watkinson, C. (2024) Supporting Career Progression in Publishing through Systematic Analysis of Job Descriptions: A Cross-Industry Initiative, Learned Publishing
- Discipline:
- Business
-
- Creator:
- Carducci, Vincent and Mascorella, Anna
- Description:
- What does/can/should an egalitarian metropolis look like? And how does a focus on Detroit allow us to ask and answer these conceptual—and practical—questions in ways that draw on a variety of disciplines including architecture, history, urban planning, and the urban humanities?, This course offers an interdisciplinary perspective on urban studies, urban design, and the ways that concerns around social justice and equity can influence how we think about cities in the past, present, and future. Drawing on a range of faculty expertise in the College of Literature, Science, and the Arts and Taubman College of Architecture and Urban Planning, this team-taught course also incorporates the voices of practitioners and community members involved in current attempts to revitalize Detroit and “Detroit-like” cities in the United States and elsewhere. By “Detroit-like cities” we mean urban areas that have experienced negative population growth, deindustrialization, economic disinvestment, racial stratification, environmental injustices, and concomitant crises in housing, health care, policing, criminalization, and education. At the same time, Detroit and Detroit-like cities offer opportunities to conjoin critical humanistic inquiry, urban design, and policy solutions for building more equitable and sustainable cities., and This course is co-designed and co-taught as part of the Egalitarian Metropolis Project, which is a partnership between the Taubman College of Architecture and Urban Planning and the College of Literature, Science, and the Arts. It combines traditional course materials with a team-based orientation to teaching and learning. More information about the EM Classroom can be found at https://sites.lsa.umich.edu/egalitarianmetropolis/em-classroom/.
- Discipline:
- Social Sciences and Humanities
-
- Creator:
- Crain, Mark
- Description:
- The 2023 DREAM Street Fair was a free, family-friendly festival celebrating our neighborhood’s spirit of community, entrepreneurship, arts and culture, and healthy living. Hosted by Jermaine “Big Fresh” Carey and rising comedian Nadirah Pierre, and headlined by multi-platinum recording artist Freeway, the event featured performances by Khalil Ismail, Ain’t Afraid, Journalist 103, Tariq Toure, and Hardcore Detroit. It was an afternoon of empowering poetry, soulful vocals, classic hip-hop, world-class break dancing, and fun interactions with the crowd. Nearly 40 vendors, including some of the area’s best food trucks, set up shop to interact with 3,000 attendees over the course of the day. And children were treated to bounce houses, button-making, book readings, and outdoor video gaming., Primarily hosted by Dream of Detroit, a local organization combining community organizing and development to revitalize a Westside neighborhood, the Street Fair was a true community partnership. The Detroit Repertory Theatre, the city’s longest-running neighborhood theatre, opened up their lot to sell treasured props from 60 years worth of performances. The HUDA Clinic, our local free health care center, offered dental screenings, health assessments and referral services. And, at the HUDA Urban Garden, attendees picked fruits and vegetables, and learned creative ways to make tasty and healthy meals and snacks. Putting on a free neighborhood festival of this scale would have been impossible without the support of Egalitarian Metropolis and sponsors like Mercy-USA. Plainly put: these types of events don’t usually happen in neighborhoods like ours. That’s why, for nearly a decade, Dream of Detroit has been working toward a truly inclusive Detroit recovery where the idea that “every neighborhood has a future” is more than just a political slogan., and Our goal with this event was to host an excellent celebration for our community members, and to shine a spotlight on the community-led placemaking and development happening in our neighborhood. The DREAM Street Fair stands alongside other initiatives like the DREAM Community Land Trust, our partnership with ProsperUs Detroit Entrepreneurship Workshop, and our membership in the Coalition for Property Tax Justice, as just some of the programs we are involved in to do our small part in creating an Egalitarian Metropolis. More information about DREAM of Detroit can be found at https://dreamofdetroit.org/.
- Discipline:
- Social Sciences and Humanities
-
- Creator:
- Porter, David
- Description:
- Launched in response to the growing crisis of narrative infrastructure, the Detroit River Story Lab is a collaborative, public-facing initiative that leverages the sociocultural, economic, and ecological centrality of the Detroit River corridor to reimagine it as an urban case study in narrative placemaking and civic renewal. Beginning with the premise that place-based storymaking is vital to sustaining democratic values and community capacity for self-determination, the Lab partners on projects designed to support the narrative capacities of local urban communities through the story-telling channels of community journalism, place-based education, and public history., The Story Lab co-designs scalable interventions to strengthen community-based forms of narrative infrastructure. Participants draw upon archives and oral histories to document previously marginalized narratives centering the river. Drawing on this research, we prototype new approaches to place-based learning, within the university and beyond, to expand the publics involved in the production and circulation of local narratives of identity and urban memory., and More information about the Detroit River Story Lab (DRSL) can be found at https://sites.lsa.umich.edu/detroit-river-story-lab/.
- Discipline:
- Humanities and Social Sciences
-
- Creator:
- Kim, Yongsung, Cheng, Weiqiu, Cho, Chun-Seok, Kang, Hyun Min, and Lee, Jun Hee
- Description:
- This dataset contains a typical example of Seq-Scope dataset that investigators would generate after examining the initial sequence data. If the quality of the initial Seq-Scope dataset looks great, one may decide to sequence the library much more deeply to maximize the information content. (see NovaScope tutorial at https://seqscope.github.io/NovaScope/ for more details). The spatial barcode sequences and the initial version of the sequenced cDNA library are deposited separate repository, which is described in the NovaScope documentation ( https://seqscope.github.io/NovaScope/). This data repository contains a deeper sequencing of the same library. A shallower version of sequencing, which does not have overlapping data with the current repository can be found at https://doi.org/10.5281/zenodo.10840695
- Keyword:
- Seq-Scope, Spatial Transcriptomics
- Citation to related publication:
- Yongsung Kim, Weiqiu Cheng, Chun-Seok Cho, Yongha Hwang, Yichen Si, Anna Park, Mitchell Schrank, Jer-En Hsu, Jingyue Xi, Myungjin Kim, Ellen Pedersen, Olivia I. Koues, Thomas Wilson, Goo Jun, Hyun Min Kang2, Jun Hee Lee, “Seq-Scope Protocol: Repurposing Illumina Sequencing Flow Cells for High-Resolution Spatial Transcriptomics” (submitted)
- Discipline:
- Science
-
- Creator:
- Black, Marcia and Draper Garcia, Lex
- Description:
- Black Bottom Archives (BBA) is a community-driven media platform dedicated to centering and amplifying the voices, experiences, and perspectives of Black Detroiters through digital storytelling, journalism, art, and community organizing with a focus on preserving local Black history & archiving our present., Black Bottom Archives Presents: Sankofa Community Research (SCR) is a Black Detroiter led, year-long community research project in partnership with Detroit Peoples Platform and academic partners at the University of Michigan, Eastern Michigan University, and Wayne State University to collect oral histories and conduct historical research to document the multi-generational impact of the destruction of Black Bottom and Paradise Valley on Black Detroiters; and to explore Black Detroiters collective vision for reparations as part of the 'I-375 Reconnecting Communities Project.', and Bringing together oral histories, census records, business records, historic maps, and other sources, we will examine how displacement impacted people, businesses, cultural centers, environment, public space, and infrastructure and produce a community report that presents evidence of impact and proposes reparative actions. More information about Black Bottom Archives can be found at https://www.blackbottomarchives.com/.
- Discipline:
- Humanities and Social Sciences
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:124693 (Aotus azarae) - WholeBody. Reconstructed Dataset includes 1831 TIF images (each 1634 x 1453 x 1 voxel at 0.035184 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:124693 (Aotus azarae) - WholeBody. Raw Dataset includes 1601 TIF images (each 1634 x 1453 x 1 voxel at 0.03518376 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Primates, Aotidae, Aotus azarae, 1987319884, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987319884
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:176889 (Cystophora cristata) - WholeBody. Raw Dataset includes 1601 TIF images (each 1352 x 1999 x 1 voxel at 0.1103929 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:176889 (Cystophora cristata) - WholeBody. Reconstructed Dataset includes 1113 TIF images (each 1352 x 1999 x 1 voxel at 0.110393 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Phocidae, Cystophora cristata, 1987242234, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987242234
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:170489 (Chrysocyon brachyurus) - WholeBody. Reconstructed Dataset includes 1495 TIF images (each 1908 x 1243 x 1 voxel at 0.121618 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:170489 (Chrysocyon brachyurus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1908 x 1243 x 1 voxel at 0.1216177 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Canidae, Chrysocyon brachyurus, 1987240684, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987240684
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:170469 (Addax nasomaculatus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1172 x 980 x 1 voxel at 0.08671137 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:170469 (Addax nasomaculatus) - WholeBody. Reconstructed Dataset includes 1917 TIF images (each 1172 x 980 x 1 voxel at 0.086711 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Artiodactyla, Bovidae, Addax nasomaculatus, 1987230627, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987230627
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:163808 (Crocuta crocuta) - WholeBody. Raw Dataset includes 1601 TIF images (each 1931 x 1509 x 1 voxel at 0.1216165 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:163808 (Crocuta crocuta) - WholeBody. Reconstructed Dataset includes 1973 TIF images (each 1931 x 1509 x 1 voxel at 0.121617 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Hyaenidae, Crocuta crocuta, 1987337051, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987337051
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:157158 (Conepatus humboldtii) - WholeBody. Reconstructed Dataset includes 1979 TIF images (each 984 x 1237 x 1 voxel at 0.037468 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:157158 (Conepatus humboldtii) - WholeBody. Raw Dataset includes 1601 TIF images (each 984 x 1237 x 1 voxel at 0.03746828 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Mephitidae, Conepatus humboldtii, 1987299399, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987299399
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:114800 (Acinonyx jubatus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1978 x 1688 x 1 voxel at 0.09413704 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:114800 (Acinonyx jubatus) - WholeBody. Reconstructed Dataset includes 1671 TIF images (each 1978 x 1688 x 1 voxel at 0.094137 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Felidae, Acinonyx jubatus, 1987312308, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987312308
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:103553 (Cynictis penicillata) - WholeBody. Raw Dataset includes 1601 TIF images (each 1048 x 1049 x 1 voxel at 0.03995863 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:103553 (Cynictis penicillata) - WholeBody. Reconstructed Dataset includes 1946 TIF images (each 1048 x 1049 x 1 voxel at 0.039959 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Herpestidae, Cynictis penicillata, 1987248107, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987248107
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:101779 (Callorhinus ursinus) - WholeBody. Reconstructed Dataset includes 1883 TIF images (each 1927 x 1392 x 1 voxel at 0.121618 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:101779 (Callorhinus ursinus) - WholeBody. Raw Dataset includes 1601 TIF images (each 1927 x 1392 x 1 voxel at 0.1216177 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Carnivora, Otariidae, Callorhinus ursinus, 1987306997, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987306997
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:85357 (Alouatta belzebul) - WholeBody. Reconstructed Dataset includes 1942 TIF images (each 1232 x 1784 x 1 voxel at 0.065510 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:85357 (Alouatta belzebul) - WholeBody. Raw Dataset includes 1601 TIF images (each 1232 x 1784 x 1 voxel at 0.06550971 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Primates, Atelidae, Alouatta belzebul, 1987290748, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987290748
- Discipline:
- Science
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses on students' educational performance through the EPA’s national School Bus Rebate Program. Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the change in school district level reading and language arts and math standardized test scores after vs before the 2012 through 2016 lotteries by funding selection status . We used overall district average standardized test scores since rates were not available for only school-bus riders.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, and Student standardized testing
- Citation to related publication:
- Pedde, M., Szpiro, A., Hirth, R., Adar, S. School Bus Rebate Program and Student Educational Performance Test Scores. JAMA Network Open (2024). https://doi.org/10.1001/jamanetworkopen.2024.3121
- Discipline:
- Health Sciences
-
- Creator:
- Porter, David
- Description:
- Launched in response to the growing crisis of narrative infrastructure, the Detroit River Story Lab is a collaborative, public-facing initiative that leverages the sociocultural, economic, and ecological centrality of the Detroit River corridor to reimagine it as an urban case study in narrative placemaking and civic renewal. Beginning with the premise that place-based storymaking is vital to sustaining democratic values and community capacity for self-determination, the Lab partners on projects designed to support the narrative capacities of local urban communities through the story-telling channels of community journalism, place-based education, and public history., There are many stories from across a variety of periods and contexts that foreground the prevalence of aquatic racialization in our region. These include the legal restrictions placed on Black residents’ access to the Detroit River in the aftermath of the successful escape of Thornton and Lucie Blackburn from Kentucky slave catchers in 1833, repeated episodes of the often violent expulsion of Black workers and residents from Wyandotte and other sundown towns along the Detroit River between the 1870s and 1940s – and the repeated erasure of these stories from official published histories of these towns, the Bob-Lo Excursion Company’s policy, in the 1930’s and 40’s, of barring Blacks from the ferry boats that provided access for Detroiters to the Boblo Island amusement park, a policy famously up-ended by the US Supreme Court in 1948 after being challenged by a 24-year-old Detroit, Sarah Elizabeth Ray, after being ordered to leave the boat, the demolition of the predominantly Black, riverside neighborhood of Black Bottom in Detroit in the 1950s in the name of urban renewal, the UN’s 2014 appeal, on the grounds of basic human rights, for the city of Detroit to restore access to water sourced from their own Detroit River to residents who can’t afford monthly water bills, and consumption restrictions on Detroit River fish important to local populations owing to long histories of environmental degradation., and Considered together, these cases would seem to point to an undertheorized dimension of racialized systems of hierarchy and exclusion in the Great Lakes region and possibly the US more generally. The origins and long-term effects of zones of racial exclusion in the economically decisive domains of work, education, and housing are by now well known. The role of waterways as similarly delineated spaces of privilege and oppression is less commonly noted; in a state whose history has been so thoroughly defined by its lakes and rivers and so regularly scarred by racial conflict, the phenomenon of aquatic racialization calls out for integrative examination and public reckoning. More information about Aquatic Spaces can be found at https://sites.lsa.umich.edu/detroit-river-story-lab/.
- Discipline:
- Humanities and Social Sciences
-
- Creator:
- Irani, Sanaya , Tolia, Sangini, Finks, Jonathan, and Sandhu, Gurjit
- Description:
- Program Description DoT was founded in 2012 with a mission to increase diversity amongst medical professionals by preparing students from underrepresented communities in Detroit to successfully pursue careers in healthcare. Our program builds on a partnership between Cass Technical High School (CTHS) and the University of Michigan Medical School (UMMS). The CTHS student body is reflective of the Detroit population with more than 80% of students identifying with racial and ethnic minority backgrounds. Students with an interest in healthcare apply for the program as ninth graders. In recent years, the program has received over 60 applications for approximately 30 positions in each grade. DoT’s unique strength lies in its longitudinal structure. There are three branches of the program – Foundations (ninth and tenth grade), Rising (eleventh and twelfth grade) and Succeed (undergraduate). Ninth graders start out in DoT Foundations. Each student is paired with a first-year medical student mentor at UMMS for the entire academic year. DoT students travel to UMMS every month for a visit day, with activities designed to give students hands-on experiences in healthcare, such as suturing and ultrasound skills in the simulation center, and clinical shadowing. Students then meet with their medical student mentor over lunch. The latter part of the day is dedicated to working on their capstone projects. For the capstone projects, students work in small teams led by medical student leaders to identify a community health issue, partner with a local organization, and present their proposed solutions at a formal symposium at the end of the year. , Transition to Virtual Programming In light of the recent COVID-19 pandemic, a growing number of universities cancelled all campus events including those of pipeline programs. We felt that our programming offered an important service to our students that would be greatly missed, so our team worked to quickly create and implement a virtual program. We ensured that each of our students had access to technology at home and those who did not were offered scholarships. During our introductory student session and new parent meeting, our leadership team discussed how to set up a Gmail email address for weekly communications and taught the students how to use Zoom, Google Drive, Google Docs and Google Sheets for online learning collaboration. For the virtual Foundations program, we offered 1-hour seminars each month, where a physician was invited to give a 30-minute presentation about different organ systems, followed by a 30-minute case-based session where students worked with medical student mentors to apply their new knowledge. We also created novel sessions such as “The Path to College and Medical School” and collaborated with members of the Black Medical Association (BMA) and Latin American and Native American Medical Association (LANAMA) to host a panel session where students could learn from medical students who identified as URiM. For the mentorship aspect, we created “pods” of Foundations, Rising, and Succeed students along with medical student and physician mentors. The Foundations students and mentors met every month for an hour on Zoom, a virtual communication platform, to work on their Capstone project. Rising and Succeed students joined the group for three full-pod meetings. The goal was to increase near-peer mentorship and connections between DoT students at all levels. , and Study Population Due to the virtual nature of the 2020-2021 program, we accepted 100% of 9th grade applicants from CTHS. We also expanded our reach to a new school, The School at Marygrove (TSM), which is also located in Detroit, Michigan. TSM is involved in the Detroit-20 Partnership with the University of Michigan College of Education and includes a novel three-year residency program for novice teachers. During the 2020-2021 school year, 108 students participated in the Foundations programming with 72 of them being 9th graders and 36 being 10th graders. The students were mostly from CTHS with 12 students out of the 108 total being from TSM. Students were predominantly from an African American/Black racial background (68.4% from N=98 respondents). The students were representative of their respective schools. The majority of students at CTHS identify as black, come from low-income homes, and have variable levels of parental education.
- Keyword:
- pipeline program, Underrepresented in medicine, Mentorship, Medical education, and COVID-19
- Discipline:
- Health Sciences
-
- Creator:
- Hong, Yi, Fry, Lauren M., Orendorf, Sophie, Ward, Jamie L., Mroczka, Bryan, Wright, David, and Gronewold, Andrew
- Description:
- Accurate estimation of hydro-meteorological variables is essential for adaptive water management in the North American Laurentian Great Lakes. However, only a limited number of monthly datasets are available nowadays that encompass all components of net basin supply (NBS), such as over-lake precipitation (P), evaporation (E), and total runoff (R). To address this gap, we developed a daily hydro-meteorological dataset covering an extended period from 1979 to 2022 for each of the Great Lakes. The daily P and E were derived from six global gridded reanalysis climate datasets (GGRCD) that include both P and E estimates, and R was calculated from National Water Model (NWM) simulations. Ensemble mean values of the difference between P and E (P – E) and NBS were obtained by analyzing daily P, E, and R. Monthly averaged values derived from our new daily dataset were validated against existing monthly datasets. This daily hydro-meteorological dataset has the potential to serve as a validation resource for current data and analysis of individual NBS components. Additionally, it could offer a comprehensive depiction of weather and hydrological processes in the Great Lakes region, including the ability to record extreme events, facilitate enhanced seasonal analysis, and support hydrologic model development and calibration. The source code and data representation/analysis figures are also made available in the data repository.
- Keyword:
- Great Lakes, Hydrometeorological, National Water Model, Daily, Overlake precipitation, Overlake evaporation, Total runoff, Net Basin Supply, and Water Balance
- Discipline:
- Science and Engineering
-
- Creator:
- Moldwin, Mark B
- Description:
- The database was constructed by using the archived monthly newsletters of SPA and SPD. Duplicate job ads (those in both data sets and those posted over multiple months) were eliminated. The comma delimited raw data files of the job postings and the compilation of the numbers by year and job type and provided. A summary of the results is deposited in Deep Blue Documents.
- Keyword:
- Workforce, Decadal Survey, and Job Ad
- Discipline:
- Science
-
- Creator:
- Alvarado, Roman, Scheven, Ulrich M., and Meiners, Jens-Christian
- Description:
- MRI raw data Image analysis script Raw pressure and vitals data
- Keyword:
- Decompression Sickness
- Citation to related publication:
- Alvarado R, Scheven U. M, Meiners, J. C.: Real-time Imaging of Decompression Gas Bubble Growth in the Spinal Cord of Live Rats, Magnetic Resonance in Medicine, 2024, in press
- Discipline:
- Health Sciences
-
- Creator:
- Agnit Mukhopadhyay, Sanja Panovska, Raven Garvey, Michael Liemohn, Natalia Ganjushkina, Austin Brenner, Ilya Usoskin, Michael Balikhin, and Daniel Welling
- Description:
- In the recent geological past, Earth’s magnetic field reduced to 4% of the modern values and the magnetic poles moved severely apart from the geographic poles causing the Laschamps geomagnetic excursion, which happened about 41 millennia ago. The excursion lasted for about two millennia, with the peak strength reduction and dipole tilting lasting for a shorter period of 300 years. During this period, the geomagnetic field exhibited significant differences from the modern nearly-aligned dipolar field, causing non-dipole variables to mimic a magnetic field akin to the outer planets while displaying a significantly reduced magnetic strength. However, the precise magnetospheric configuration and their electrodynamic coupling with the atmosphere have remained critically understudied. This dataset contains the first space plasma investigation of the exact geomagnetic conditions in the near-Earth space environment during the excursion. The study contains a full 3D reconstruction and analysis of the geospace system including the intrinsic geomagnetic field, magnetospheric system and the upper atmosphere, linked in sequence using feedback channels for distinct temporal epochs. The reconstruction was conducted using the LSMOD.2 model, Block Adaptive Tree Solar wind-Roe-Upwind Scheme (BATS-R-US) Model and the MAGnetosphere-Ionosphere-Thermosphere (MAGNIT) Auroral Precipitation Model, all of which are publicly-available models. The dataset contains the raw data from each of these models, in addition to the images/post-processing results generated using these models. Paleomagnetic data produced by LSMOD.2 can be visualized using a combination of linear plotting and contour plotting tools available commonly in visualization software like Python (e.g. Python/Matplotlib) or MATLAB. Standard tools to read and visualize BATS-R-US and MAGNIT output are already publicly available using IDL and Python (see SpacePy/PyBats - https://spacepy.github.io/pybats.html). For information and details about the post-processed data, visualization and analysis, please contact the authors for details. The anthropological dataset can be visualized using a shape file reader (e.g. Python/GeoPandas) and a linear plotting tool (e.g. Python/Matplotlib).
- Discipline:
- Engineering and Science
-
- Creator:
- Liemohn, Michael W
- Description:
- Earth’s upper atmosphere above 500 km altitude constantly loses charged particles to outer space in a process called ionospheric outflow. This outflow is important for the dynamics of the near-Earth space environment (“space weather”) yet is poorly understood on a global scale. A mission is needed to observe the global patterns of ionospheric outflow and its relation to space weather driving conditions. The science objectives of such a mission could include not only the reconstruction of global outflow patterns but also the relation of these patterns to geomagnetic activity and the spatial and temporal nature of outflow composition. A study is presented to show that four well-placed spacecraft would be sufficient for reasonable outflow reconstructions.
- Keyword:
- ionosphere, magnetosphere, satellite mission concept, and space weather
- Citation to related publication:
- Liemohn, M. W., Jörg-Micha Jahn, Raluca Ilie, Natalia Y. Ganushkina, Daniel T. Welling, Heather Elliott, Meghan Burleigh, Kaitlin Doublestein, Stephanie Colon-Rodriguez, Pauline Dredger, & Philip Valek (2024). Reconstruction analysis of global ionospheric outflow patterns. Journal of Geophysical Research Space Physics, 129, e2023JA032238. https://doi/org/10.1029/2024JA032238
- Discipline:
- Science
-
- Creator:
- Abraczinskas, Carol and Capobianco, Alessio
- Description:
- These files (.tiff format) provide high-resolution images of a fossil specimen complementing the formal description of the osteoglossid fish †Macroprosopon hiltoni from the Eocene (Ypresian) of Morocco.
- Keyword:
- Paleontology, Fossil, Osteoglossidae, FSAC, Faculty of Sciences Aïn Chock, Casablanca, Morocco, and Eocene
- Discipline:
- Science
-
- Creator:
- Surdoval, Alison, Jain, Meha, Wang, Haoyu, and Blesh, Jennifer
- Description:
- We conducted a mixed-methods study to understand how financial incentive programs impact transitions to cover cropping in Michigan. Michigan farms span a wide range of soil types, climate conditions, and cropping systems that create opportunities for cover crop adoption in the state. We tested the relationship between Environmental Quality Incentives Program (EQIP) payments for cover crops and cover crop adoption between 2008-2019, as measured by remote sensing. Panel fixed effects regressions showed that EQIP increased winter cover crop presence. Every EQIP dollar for cover crops was associated with a 0.01 hectare increase in winter cover, while each hectare enrolled in an EQIP contract for cover crops was associated with a 0.86 – 0.93 hectare increase in winter cover.
- Keyword:
- adoption, cover crop, Environmental Quality Incentives Program, financial incentive program, Michigan, remote sensing
- Citation to related publication:
- Surdoval, A., Jain, M., Blair, E., Wang, H., and J. Blesh. In press. Financial incentive programs and farm diversification with cover crops: Assessing opportunities and challenges.
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for Snout region of Macroprosopon (catalog number FSAC CP 330; FSAC = Faculty of Sciences Aïn Chock, Casablanca, Morocco) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Osteoglossidae, FSAC, Faculty of Sciences Aïn Chock, Casablanca, Morocco, and Eocene
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Specimen FSAC CP 330_Macroprosopon_Occipital region was scanned with a Nikon XT H 225ST uCT system housed in the Department of Earth and Environmental Sciences at the University of Michigan. Scans were collected with the following settings: energy settings, 215 kV, 115 uA; source to object distance, 353.463794708252 mm; source to detector distance, 1104.999 mm; scanned with 3141 projections; voxel size, x = 0.0639753837488959 mm y = 0.0639753837488959 mm z = 0.0639753837488959 mm; slice dimension (in pixels), x = 1222, y = 2000; number of slices, 2000 16-bit TIFF images. Original floating point grey values were scaled to span the unsigned 16-bit integer range using an offset of 4151.70947265625 and a scale factor of 4.802938109992684, where 16output = SCALE * (32input + OFFSET). Additional metadata can be found in the xtekct, ctprofile.xml, and UMMPCombinedMetadata.json files.
- Keyword:
- Paleontology, Fossil, CT, Osteoglossidae, FSAC, Faculty of Sciences Aïn Chock, Casablanca, Morocco, and Morocco
- Discipline:
- Science
-
- Creator:
- Capobianco, Alessio
- Description:
- Reconstructed CT slices for skull of Petrocephalus simus (University of Michigan Museum of Zoology catalog number UMMZ Fish 200167) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Mormyridae, and UMMZ
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Pantodon buchholzi (University of Michigan Museum of Zoology catalog number UMMZ Fish 249782) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Pantodontidae, and UMMZ
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Hiodon tergisus (University of Michigan Museum of Zoology catalog number UMMZ Fish 247425) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Hiodontidae, and UMMZ
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for skull of Heterotis niloticus (University of Michigan Museum of Zoology catalog number UMMZ Fish 195004) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Osteoglossidae, and UMMZ
- Discipline:
- Social Sciences
-
- Creator:
- Capobianco, Alessio
- Description:
- Reconstructed CT slices for skull of Chitala blanci (University of Michigan Museum of Zoology catalog number UMMZ Fish 232272) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Zoology, Ichthyology, Fish, CT, Notopteridae, and UMMZ
- Discipline:
- Science
-
- Creator:
- CTEES
- Description:
- Reconstructed CT slices for whole specimen of Macroprosopon (catalog number FSAC CP 330; FSAC = Faculty of Sciences Aïn Chock, Casablanca, Morocco) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Osteoglossidae, FSAC, Faculty of Sciences Aïn Chock, Casablanca, Morocco, and Eocene
- Discipline:
- Science
-
- Creator:
- Young, Lauren, Ferrari, Fabienne, Kelly, Lisa, Martin, Tara, Thompson-Iritani, Sally , and LaFollette, Megan R
- Description:
- This dataset contains the results of a survey about professional quality of life for individuals working in animal research facilities. The survey included questions about professional quality of life, job satisfaction, retention, and other factors influencing compassion fatigue resiliency. Data was collected via Qualtrics survey as described in the methodology section. This dataset is associated with the following publication, accepted by PLOS One: PONE-D-23-17551R2 Professional quality of life in animal research personnel is linked to retention & job satisfaction: A mixed-methods cross-sectional survey on compassion fatigue in the USA by Lauren Young, Fabienne Ferrari, Lisa Kelly, Tara Martin, Sally Thompson-Iritani, and Megan R LaFollette
- Keyword:
- compassion fatigue, culture of care, mental health, retention, job satisfaction, animal research, institutional culture, resiliency, and professional quality of life
- Citation to related publication:
- PONE-D-23-17551R2 Professional quality of life in animal research personnel is linked to retention & job satisfaction: A mixed-methods cross-sectional survey on compassion fatigue in the USA by Lauren Young, Fabienne Ferrari, Lisa Kelly, Tara Martin, Sally Thompson-Iritani, and Megan R LaFollette
- Discipline:
- Science
-
- Creator:
- Dariya, Malyarenko, Tariq, Humera, Kushwaha, Aman, Mourad, Rami, Heist, Kevin, Chenevert, Thomas L, Ross, Brian D, Chen, Heang-Ping, and Hadjiiski, Lubomir
- Description:
- The 3D GRE MRI data for murine model of myelofbifrosis with expert segmentations of mouse tibia was used to train Attention UNET model to automate bone marrow segmentation for measurements of imaging biomarkers. This dataset consists of three archives: (1) containing the source MRI images in Meta-image-header (MHD) format with resulting segmentation labels by two experts and four UNET models with different training scenarios; (2) corresponding training models; and (3) deep-learning (DL)-based segmentation tools for application to future murine tibia MRI data. and The MHD images are an ITK compatible format that can be viewed in standard image viewer, like 3D Slicer. The image archive is structured with a directory tree that contains \"mouseID"\"scan-date"\"segmentaion-scenario"\. The "training model" archive containes DL-model labeled by the data subset, and "deployment" archive containes the DL-segmentation software.
- Keyword:
- deep-learning segmentation, preclinical MRI, murine tibia, and mouse model of myelofibrosis
- Citation to related publication:
- Kushwaha A, Mourad RF, Heist K, Tariq H, Chan HP, Ross BD, Chenevert TL, Malyarenko D, Hadjiiski LM. Improved Repeatability of Mouse Tibia Volume Segmentation in Murine Myelofibrosis Model Using Deep Learning. Tomography. 2023 Mar 7;9(2):589-602. doi: 10.3390/tomography9020048. PMID: 36961007; PMCID: PMC10037585. and https://github.com/dumichgh/MFJK1_Segmentation_MHDs
- Discipline:
- Health Sciences
-
- Creator:
- Lee, Shih Kuang, Tsai, Sun Ting, and Glotzer, Sharon C.
- Description:
- The trajectory data and codes were generated for our work "Classification of complex local environments in systems of particle shapes through shape-symmetry encoded data augmentation" (amidst peer review process). The data sets contain trajectory data in GSD file format for 7 test systems, including cubic structures, two-dimensional and three-dimensional patchy particle shape systems, hexagonal bipyramids with two aspect ratios, and truncated shapes with two degrees of truncation. Besides, the corresponding Python code and Jupyter notebook used to perform data augmentation, MLP classifier training, and MLP classifier testing are included.
- Keyword:
- Machine Learning, Colloids Self-Assembly, Crystallization, and Order Parameter
- Citation to related publication:
- https://doi.org/10.48550/arXiv.2312.11822
- Discipline:
- Other, Science, and Engineering
-
- Creator:
- Katz, Sarah A., Levin, Naomi E., Abbott, Mark B., Rodbell, Donald T., Passey, Benjamin H., DeLuca, Nicole N., Larsen, Darren J., and Woods, Arielle
- Description:
- This dataset presents stable isotope data (d13C, d18O, D47, D17O) from Holocene lake cores from three lakes in the Peruvian Andes (Lakes Junin, Pumacocha, and Mehcocha). We also present new radiocarbon (14C) data and core age models for Lakes Junin and Mehcocha. We use these data to explore trends in lake water temperatures and evaporative state (i.e., water balance) over the Holocene. Our clumped isotope (D47) results suggest lake water temperatures at all three lakes were stable over the Holocene and similar to present day lake temperatures. Our triple oxygen isotope (D’17O) results illustrate that lake water balance at all three lakes was variable over the Holocene and tracks changes in austral summertime insolation, suggesting a connection between central Andean water balance and the South American summer monsoon (SASM).
- Keyword:
- Holocene, Andes, temperature, water balance, lacustrine carbonate, lake hydrology, triple oxygen isotopes, and clumped isotopes
- Citation to related publication:
- Katz, S.A., Levin, N.E., Abbott, M.B., Rodbell, D.T., Passey, B.H., DeLuca, N.M., Larsen, D.J., Woods, A. "Holocene temperature and water stress in the Peruvian Andes: insights from lake carbonate clumped and triple oxygen isotopes," in review. and Katz, S.A., (2024) Andean interglacial climate and hydrology over the last 650,000 years. [PhD Thesis, University of Michigan]
- Discipline:
- Science
-
- Creator:
- Malyarenko, Dariya, Chenevert, Thomas L, Heist, Kevin, Bonham, Christopher, and Ross, Brian
- Description:
- The imaging data was used to measure repeatability and temporal trends of quantitative imaging biomarkers of myelofibrosis in bone marrow based on apparent diffusion coefficient, fat fraction and magnetization transfer ratio. The dataset consists of time series of the MRI Meta-image-header (MHD) images of wild type and diseased mice combined by the imaging time point. The MHD images are an ITK compatible format that can be viewed in standard image viewer, like 3D Slicer. Each time point image archive is structured with a directory tree that contains ./././"mouseID"/"scan-date"/"acquisition type"/
- Keyword:
- murine tibia MRI, bone marrow imaging, apparent diffusion coefficient (ADC), proton density fat fraction (PDFF), magnetization transfer ratio (MTR), and pre-clinical model of myelofibrosis
- Citation to related publication:
- Ross BD, Malyarenko D, Heist K, Amouzandeh G, Jang Y, Bonham CA, Amirfazli C, Luker GD, Chenevert TL. Repeatability of Quantitative Magnetic Resonance Imaging Biomarkers in the Tibia Bone Marrow of a Murine Myelofibrosis Model. Tomography. 2023 Feb 28;9(2):552-566. doi: 10.3390/tomography9020045. PMID: 36961004; PMCID: PMC10037563.
- Discipline:
- Health Sciences
-
- Creator:
- Bautista-Arredondo, Luis F., Muñoz-Rocha, T. Verenice, Figueroa, José L., Téllez-Rojo, Martha M., Torres-Olascoaga, Libni A., Cantoral, Alejandra, Arboleda-Merino, Laura C., Leung, Cindy, Peterson, Karen E., and Lamadrid-Figueroa, Héctor
- Description:
- Data was collected from participants of the Early Life Exposures in Mexico to ENvironmental Toxicants (ELEMENT) study, which consists of three sequentially-enrolled birth cohorts of pregnant women. Research protocols of this study were approved by the Institutional Review Board at University of Michigan and the Mexico National Institute of Public Health. We obtained informed consent from study participants prior to enrollment.
- Keyword:
- Food Insecurity, COVID-19 Pandemic, Mexico, Cohort
- Citation to related publication:
- Bautista-Arredondo LF, Verenice Muñoz-Rocha T, Figueroa JL, Téllez-Rojo MM, Torres-Olascoaga LA, Cantoral A, Arboleda-Merino L, Leung L, Peterson KE, and Lamadrid-Figueroa H. A surge in food insecurity during the COVID-19 pandemic in a cohort in Mexico City. 2022. Article in process of publication.
- Discipline:
- Health Sciences
-
- Creator:
- Sheppard, Anja, Sethuraman, Advaith V, Bagoren, Onur, Pinnow, Christopher, Anderson, Jamey, Havens, Timothy C, and Skinner, Katherine A
- Description:
- The AI4Shipwrecks dataset contains sidescan sonar images of shipwrecks and corresponding binary labels collected during 2022 and 2023 at the NOAA Thunder Bay National Marine Sanctuary in Alpena, MI. The data collection platform was an Iver3 Autonomous Underwater Vehicle (AUV) equipped with an EdgeTech 2205 dual-frequency ultra-high resolution sidescan sonar and 3D bathymetric system. The labels were compiled from reference labels created by experts in marine archaeology. The intended use of this dataset is to encourage development of semantic segmentation, object detection, or anomaly detection algorithms in the computer vision field. Comparisons of state-of-the-art segmentation networks on our dataset are shown in the paper. , The file structure is organized as described in the README.txt file, where images in 'images' directories are the waterfall product of sidescan sonar surveys, and images in 'labels' directories are binary representations of expert labels. Images across the 'images' and 'labels' directories are correlated by having identical filenames. In the label images, a pixel value of '0' represents the non-shipwreck/other class and '1' represents the shipwreck class for the correspondingly named image (<wreck_name>_<##>.png) in the images directory. , and The project webpage can be found at: https://umfieldrobotics.github.io/ai4shipwrecks/
- Keyword:
- machine learning, computer vision, field robotics, marine robotics, underwater robotics, sidescan sonar, semantic segmentation, and object detection
- Discipline:
- Engineering
-
- Creator:
- Xiantong Wang
- Description:
- Bursty bulk flows (BBFs) are identified as the fast earthward-propagating flows from magnetic reconnection in Earth's magnetotail. BBFs are related to particle energization process reported by satellite observations. For the first time, we use a novel numerical model that simulates kinetic physics directly in a global model. The energization of the electrons associated with BBF is demonstrated by the model. The electron velocity distribution functions (VDFs) extracted from multiple locations associated with BBF demonstrate good agreements with the observations. The energy-dependent electron pitch angle distribution at the leading part of the BBF can be explained by the enhancement of the local magnetic field.
- Discipline:
- Science
-
- Creator:
- Zhang, Yingxiao MI
- Description:
- We developed a new model framework based on WRF-Chem, simulating primary biological aerosol particle emissions and their interaction with clouds. We have designed different sensitivity tests to evaluate the effects of pollen and sub-pollen particles (SPPs), respectively. Our results show that SPPs have a larger effect on cloud microphysics and precipitation than whole pollen grains.
- Keyword:
- Aerosol-cloud interactions, Primary biological aerosol particles, Ice nucleating particles, Microphyscis scheme, and Pollen
- Discipline:
- Science
-
- Creator:
- Skinner, Katherine A., Vasudevan, Ram, Ramanagopal, Manikandasriram S., Ravi, Radhika, Carmichael, Spencer, and Buchan, Austin D.
- Description:
- This dataset is part of a collection created to facilitate research in the use of novel sensors for autonomous vehicle perception. , The dataset collection platform is a Ford Fusion vehicle with a roof-mounted novel sensing suite, which specifically consists of forward-facing stereo uncooled thermal cameras (FLIR 40640U050-6PAAX), event cameras (iniVation DVXplorer), monochrome cameras (FLIR BFS-PGE-16S2M), and RGB cameras (FLIR BFS-PGE-50S5C) time synchronized with ground truth poses from a high precision navigation system. , and Further information and resources (such as software tools for converting, managing, and viewing data files) are available on the project website: https://umautobots.github.io/nsavp
- Keyword:
- novel sensing, perception, autonomous vehicles, thermal sensing, neuromorphic imaging, and event cameras
- Citation to related publication:
- https://umautobots.github.io/nsavp, https://github.com/umautobots/nsavp_tools, and https://sites.google.com/umich.edu/novelsensors2023
- Discipline:
- Engineering
-
- Creator:
- Skinner, Katherine A., Vasudevan, Ram, Ramanagopal, Manikandasriram S., Ravi, Radhika, Carmichael, Spencer, and Buchan, Austin D.
- Description:
- This dataset is part of a collection created to facilitate research in the use of novel sensors for autonomous vehicle perception., The dataset collection platform is a Ford Fusion vehicle with a roof-mounted novel sensing suite, which specifically consists of forward-facing stereo uncooled thermal cameras (FLIR 40640U050-6PAAX), event cameras (iniVation DVXplorer), monochrome cameras (FLIR BFS-PGE-16S2M), and RGB cameras (FLIR BFS-PGE-50S5C) time synchronized with ground truth poses from a high precision navigation system. , and Further information and resources (such as software tools for converting, managing, and viewing data files) are available on the project website: https://umautobots.github.io/nsavp
- Keyword:
- novel sensing, perception, autonomous vehicles, thermal sensing, neuromorphic imaging, and event cameras
- Citation to related publication:
- https://umautobots.github.io/nsavp, https://github.com/umautobots/nsavp_tools, and https://sites.google.com/umich.edu/novelsensors2023
- Discipline:
- Engineering
-
- Creator:
- Skinner, Katherine A., Vasudevan, Ram, Ramanagopal, Manikandasriram S., Ravi, Radhika, Carmichael, Spencer, and Buchan, Austin D.
- Description:
- This dataset is part of a collection created to facilitate research in the use of novel sensors for autonomous vehicle perception., The dataset collection platform is a Ford Fusion vehicle with a roof-mounted novel sensing suite, which specifically consists of forward-facing stereo uncooled thermal cameras (FLIR 40640U050-6PAAX), event cameras (iniVation DVXplorer), monochrome cameras (FLIR BFS-PGE-16S2M), and RGB cameras (FLIR BFS-PGE-50S5C) time synchronized with ground truth poses from a high precision navigation system. , and Further information and resources (such as software tools for converting, managing, and viewing data files) are available on the project website: https://umautobots.github.io/nsavp
- Keyword:
- novel sensing, perception, autonomous vehicles, thermal sensing, neuromorphic imaging, and event cameras
- Citation to related publication:
- https://umautobots.github.io/nsavp, https://github.com/umautobots/nsavp_tools, and https://sites.google.com/umich.edu/novelsensors2023
- Discipline:
- Engineering
-
- Creator:
- Asthana, Vishwaratn, Monovoukas, Demetri, Kucharski, Kevin, Chopra, Zoey, Perkins, Sidney, and Bugga, Pallavi
- Description:
- It is difficult to model outcomes in patients post-ST Elevation Myocardial Infarction (STEMI), particularly onset of heart failure. The acute insult following a myocardial infarction and chronic degeneration seen in HF involve a similar process where a loss of cardiomyocytes and abnormal remodeling lead to pump failure. This process may alter the strength and direction of the heart’s net depolarization signal. The investigators hypothesized that changes over time in unique parameters extracted using vectorcardiography (VCG) have the potential to predict clinical outcomes in patients post-STEMI and could eventually be used as a non-invasive and cost-effective surveillance tool for characterizing the severity and progression of HF to guide evidence-based therapies.
- Keyword:
- Cardiology, ECG, VCG, STEMI, and Heart Failure
- Discipline:
- Health Sciences
-
- Creator:
- Cevidanes, Lucia
- Description:
- Image Pre-Processing To allow reliable detection and comparison of changes between several individuals or within the same individual at different time points, before extracting the quantitative bone texture/morphometry features, all hr-CBCT scans were pre-processed using validated protocols. Extraction of Trabecular Bone Texture-based and Morphometry Imaging Features Using the “crop-volume” tool in 3D Slicer, a rectangular shaped volume of interest (VOI) was cropped from the trabecular bone in the mandibular condyles and the articular fossa. Then, using the average minimum and maximum intensity values of all VOIs, we standardized the grey level intensities of the VOIs to eliminate inaccuracies of textural features calculation and possible dependency on the global characteristics of the images. Lastly, imaging markers were extracted from the standardized VOIs using “BoneTexture” module in 3D-slicer. Measurement of the 3D Articular Joint Space To assess the progression/improvement of osteoarthritic changes in the affected individuals, we measured the 3D superior joint space. We pre-labelled two landmarks in the sagittal view of the oriented CBCT scans: on the most superior point of the condyle and on the opposing surface of the articular fossa. To avoid biasing the landmarks’ placements, pre-labelling was performed simultaneously on T1 and T2 scans, using two independent windows in ITK-SNAP. After the volumetric reconstruction of the identified landmarks, linear measurements were obtained in millimeters using the Q3DC tool in 3D Slicer. Three-dimensional Shape Analyses and Quantification of Remodeling in the Condyles SPHARM-PDM software was used to compute the correspondence across 4002 surface points among all condyles. The output point-based models displayed color-coded maps that enabled visual evaluation of consistent parametrization of all condyles. An average condyle shape for the TMJ OA and control groups was calculated through propagation of original surface point correspondences across all stages of deformations and averaging the condyle surface meshes. For visualization of the 3D qualitative changes of the average models within the same group at different time points or among different groups, semi-transparent overlays were created using 3D Slicer software. The vector differences were presented on the condyle surfaces, scaled according to the magnitude of difference, and pointing towards the direction of bone change. For quantification of remodeling in the condyles, calculation of signed distances across condyles surface meshes reflected the quantitative bone changes in the TMJ OA and control samples. To quantify regional bone changes across the lateral and anterior surfaces of the condyles, we used the Pick ‘n Paint tool in 3D Slicer to propagate regional surface points to the corresponding regions of shapes across all subjects and time points.
- Keyword:
- Degenerative joint disease, Temporomandibular joint osteoarthritis, TMJ OA, Machine learning, Prognosis
- Discipline:
- Health Sciences
-
- Creator:
- Kimbrough, Erik, Murray, Jennifer, Sarmiento, Olga, Krupka, Erin, Ramalingam, Abhijit , Kee, Frank, Kumar, Rajnish, Sánchez-Franco, Sharon , and Hunter, Ruth
- Description:
- THE DATA: Unfortunately, we are unable to share our data for this project. Since we were working with a vulnerable population (children), we were asked by Queens University Belfast’s IRB-equivalent to include language in the consent documents indicating that the data would not be shared outside of the research team. Thus, the datasets generated during and/or analyzed during the current study are not publicly available as participants were informed that no-one outside of the research team would have access to the research data when they signed their consent forms. Thus, we provide Stata, R and Mplus scripts used to generate all tables and figures reported in the paper. Since we cannot share the raw study data, most of these files cannot be run, but in the interest of transparency we include the scripts so that our code can be checked. Since a major portion of the paper is the LTA modeling, we took an additional step there and generated simulated data that allows the R+Mplus scripts to be run. These runnable scripts and the simulated data are contained in the subfolder LTA_code_EXEC. For further information about the study datasets, please contact the authors (Emails: Jennifer.Murray@qub.ac.uk; ruth.hunter@qub.ac.uk)
- Keyword:
- norms heterogeneity, experimental economics, and RCT
- Citation to related publication:
- Kimbrough, E., Krupka, E., Kumar, R., Murray, J., and Ramalingam, A. (conditional accept). On the Stability of Norms and Norm-Following Propensity: A Cross Cultural Panel Study with Adolescents. Experimental Economics
- Discipline:
- Health Sciences and Social Sciences
-
- Creator:
- Lumeng, Julie C
- Description:
- Infant eating behavior is likely driven not only by hunger and satiety reflective of caloric need, but also by the reward value of food. The reward value of food can be understood in terms of wanting, liking, and salience. Little is understood about infant response to the reward value of food, or its predictors, particularly prenatally. This project sought to understand whether prenatal factors during pregnancy predict infant reward response to food, as measured by questionnaires in early infancy.
- Keyword:
- wanting, liking, salience, infancy, eating, growth, and prenatal
- Discipline:
- Health Sciences
-
- Creator:
- Chung, Taewon , McClain, Taylor P. , Alonso-Mori, Roberto , Chollet, Matthieu , Deb, Aniruddha , Garcia-Esparza, Angel T. , Huang, Joel Ze En , Lamb, Ryan M. , Michocki, Lindsay B. , Reinhard, Marco , van Driel, Tim B. , Penner-Hahn, James E. , and Sension, Roseanne J.
- Description:
- UV-visible, X-ray absorption, and X-ray emission data used to characterize the dynamics of methyl cobalamin at low pH, so called "base off" configuration. Details of data collection and reduction are provided in the associated manuscript. Data files are all text files which contain tab-delimited columns of data corresponding to each figure in the manuscript
- Keyword:
- Ultrafast, X-ray, Transient absorption, cobalamin, vitamin B12, XAS, and XANES
- Citation to related publication:
- Chung, T., et al. (2024). "Ultrafast X-ray Absorption Spectroscopy Reveals Excited State Dynamics of B12 Coenzymes Controlled by the Axial Base". J. Phys. Chem. B. 2024, in press https://pubs.acs.org/doi/10.1021/acs.jpcb.3c07779
- Discipline:
- Science
-
- Creator:
- Rida, Salam and Smith, Torri
- Description:
- Michigan-Mellon’s renewed Egalitarian Metropolis cycle of funding focuses on the city of Detroit and ways that creative practice and the urban humanities can equitably address urban recovery. In tangible ways, The University of Michigan Architecture Preparatory Program (ArcPrep) is already doing just that: creating a sense of optimism and agency for Detroit public high school juniors interested in design and its affiliated fields. , Through an intensive, semester-long studio taught by our Mellon Fellows in Architecture, young designers learn to critically discern Detroit’s complex spatial histories as they explore ways to shape the city’s possible futures. The program takes the students’ talents, creativity, and expertise very seriously, nurturing an inclusionary pedagogical model based broadly on egalitarian educational ideals. In the process, we bring together a network of Taubman College faculty and students, Detroit institutions, community and government organizations, and professional enterprises into conversation and collaboration with students. In the past, ArcPrep has partnered with the Detroit Public Library, the Detroit Institute of Arts, the Detroit Cultivator Community Land Trust, and the Sidewalk Festival, to name a few. With each partnership, we situated culturally contingent, place-based design exercises for students to directly engage with the city and its leaders., and More information about the Michigan Architecture Preparatory Program (ArcPrep) can be found at https://taubmancollege.umich.edu/academics/pre-college-programs/michigan-architecture-prep/
- Discipline:
- Social Sciences and Humanities
-
- Creator:
- Myers, Jillian and Schulz, Frederik
- Description:
- We identify and describe a new clade of viruses in the Nucleocytoviricota that infect fungi, particularly the early-diverging lineages, which we name Mycodnaviridae. Here we deposit the genomes of five viruses belonging to Mycodnaviridae, labeled by host, as well as our Nucleocytoviricota phylogeny.
- Keyword:
- giant virus, mycovirus, NCLDV, Nucleocytoviricota, early-diverging fungi, and endogenous viral elements (EVEs)
- Citation to related publication:
- https://doi.org/10.1101/2024.01.04.574182
- Discipline:
- Science
-
- Creator:
- Rana, Gurpreet K., Reynolds, Christopher W., Rha, Jennifer Y., Lenselink, Allison M., Asokumar, Dhanya, Zebib, Laura, Giacona, Francesca L. , Islam, Nowshin N., Kannikeswaran, Sanjana, Manuel, Kara, Cheung, Allison, Marzoughi, Maedeh , and Heisler, Michele
- Description:
- The search data supports a literature review project on "Innovative strategies and implementation science approaches for health delivery among migrants in humanitarian settings". The data included in the dataset are the complete search strategies (rtf file) and the exported results of all citations from all databases (ris file) after removal of duplicate citations.
- Keyword:
- humanitarian setting, migrant, forced displacement , health delivery, implementation science, and scoping review
- Discipline:
- Health Sciences
-
- Creator:
- Sealey, Briana A., Larson, Joanna G., Westeen, Erin P., Sánchez-Paredes, Ciara M., Moore, Talia Y., and Davis Rabosky, Alison R.
- Description:
- In this study, we experimentally tested for the effects of four simulated predator cues on defensive displays in two species of South American calico snakes (genus Oxyrhopus). We found that juvenile snakes were both more likely to respond and to respond more strongly than adults and that displays were most common in response to tactile stimuli than to other treatments. However, we also found broad similarity across both simulated predator treatments and species in the components used in each snake’s defensive display, suggesting a high degree of stereotyping. This research suggests an important role for both ontogeny and intensity of predation risk in structuring variation in defensive behavior in Neotropical snakes and emphasizes the foundational importance of context dependence in conceptual frameworks for understanding predator-prey interactions. and *On January 4, 2024, “Supplementary_material.pdf” was replaced with an updated version that has slightly different versions of Figures S4 and S8 after an error in code was corrected. Within “HeatmapFigures.zip,” two code files, “IndividualHeatmaps_matrices.R” and “FigureS4_S8_averagedHeatmaps.R” were updated to correct the code error. Three additional files were added to both the “figures” and “matrices” folders within the subfolder “heatmaps.” These files represent the correlation matrices, by body part, and graphical representation of the matrices for one experimental trial that had previously been excluded due to the code error.
- Keyword:
- context-dependence, anti-predator behavior, Peruvian Amazon, ontogeny, coral snake mimicry, Colubridae
- Citation to related publication:
- Sealey, B.A.*, Larson, J.G.*, Westeen, E.P., Sanchez-Paredes, C.M., Moore, T.Y., Davis Rabosky, A.R. Body size and predator cues structure variation in defensive displays of Neotropical calico snakes (Oxyrhopus spp.). Ethology. In press. *Authors contributed equally
- Discipline:
- Science
-
- Creator:
- Lockhart, Nancy
- Description:
- GRAND is a five-year, cluster randomized controlled trial. The study is registered on ClinicalTrials.gov, [ID#: NCT04033003] and is a collaboration between University of Michigan in the United States and the Dodowa Health Research Center in Ghana. and The study setting for GRAND is four districts (Akwapim North, Yilo Krobo, Nsawam-Adoagyiri, and Lower Manya Krobo) within the Eastern Region of Ghana. Health facilities were selected based the number ANC registrants per month and average gestational age of women at registration in each facility. Facilities were then matched based on facility type, district, and number of monthly ANC registrants.
- Keyword:
- Antenatal care, Ghana, and Maternal health
- Discipline:
- Health Sciences and International Studies
2Works -
- Creator:
- Hawes, Jason K, Goldstein, Benjamin P. , Newell, Joshua P. , Dorr, Erica , Caputo, Silvio , Fox-Kämper, Runrid , Grard, Baptiste , Ilieva, Rositsa T. , Fargue-Lelièvre, Agnès , Poniży, Lidia , Schoen, Victoria , Specht, Kathrin , and Cohen, Nevin
- Description:
- Urban agriculture (UA) is a widely proposed strategy to make cities and urban food systems more sustainable. However, its carbon footprint remains understudied. In fact, the few existing studies suggest that UA may be worse for the climate than conventional agriculture. This is the first large-scale study to resolve this uncertainty across cities and types of UA, employing citizen science at 73 UA sites in Europe and the United States to compare UA products to food from conventional farms. The results reveal that food from UA is six times as carbon intensive as conventional agriculture (420g vs 70g CO2 equivalent per serving). Some UA crops (e.g., tomatoes) and sites (e.g., 25% of individually-managed gardens), however, outperform conventional agriculture. These exceptions suggest that UA practitioners can reduce their climate impacts by cultivating crops that are typically greenhouse grown or air-freighted, maintaining UA sites for many years, and leveraging waste as inputs.This database contains the necessary reference material to trace the path of our analysis from raw garden data to carbon footprint and nutrient results. It also contains the final results of the analyses in various extended forms not available in the publication. For more information, see manuscript at link below. (Introduction partially quoted from Hawes et al., 2023)
- Citation to related publication:
- Hawes, J. K., Goldstein, B. P., Newell, J. P., Dorr, E., Caputo, S., Fox-Kämper, R., Grard, B., Ilieva, R. T., Fargue-Lelièvre, A., Poniży, L., Schoen, V., Specht, K., & Cohen, N. (2024). Comparing the carbon footprints of urban and conventional agriculture. Nature Cities, 1–10. https://doi.org/10.1038/s44284-023-00023-3
- Discipline:
- Engineering
-
- Creator:
- Lori, Jody R., Moyer, Cheryl, Lockhart, Nancy, Zielinski, Ruth E., Kukula, Vida, Apetorgbor, Veronica, Awini, Elizabeth, Badu-Gyan, Georgina, and Williams, John
- Description:
- GRAND is a five-year, cluster randomized controlled trial. The study is registered on ClinicalTrials.gov, [ID#: NCT04033003] and is a collaboration between University of Michigan in the United States and the Dodowa Health Research Center in Ghana. , The study setting for GRAND is four districts (Akwapim North, Yilo Krobo, Nsawam-Adoagyiri, and Lower Manya Krobo) within the Eastern Region of Ghana. Health facilities were selected based the number ANC registrants per month and average gestational age of women at registration in each facility., and Facilities were then matched based on facility type, district, and number of monthly ANC registrants. A cluster randomized controlled trial was conducted in 14 facilities in four districts of the Eastern Region of Ghana. Health facilities were randomized using a matched pairs design; each pair was similar in the number of deliveries and average gestational age of the women at enrollment in antenatal care. The locations of the facilities were far enough apart to avoid cross-group contamination. In each pair of facilities, one was randomly assigned to the intervention (G-ANC) and the other to the control (I-ANC). Recruitment began July 2019 and ended when enrollment targets were met. Data collection ended July 2023 when data collection was complete.
- Keyword:
- Antenatal care, Ghana, and Maternal health
- Citation to related publication:
- Lori, J., Kukula, V., Liu, L. et al. Improving health literacy through group antenatal care: results from a cluster randomized controlled trial in Ghana. BMC Pregnancy Childbirth 24, 37 (2024). https://doi.org/10.1186/s12884-023-06224-x
- Discipline:
- International Studies and Health Sciences