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- Creator:
- Billings, Gideon H and Johnson-Roberson, Matthew
- Description:
- UWHandles is a dataset for 6D object pose estimation in underwater fisheye images. It provides 6D pose and 2D bounding box annotations for 3 different graspable handle objects used for ROV manipulation. The dataset consists of 28 image sequences collected in natural seafloor environments with a total of 20,427 annotated frames. and Meta repository for the dataset https://github.com/gidobot/UWHandles
- Keyword:
- Deep Learning, Pose Estimation, and Underwater Vision
- Citation to related publication:
- Billings, G., & Johnson-Roberson, M. (2020). SilhoNet-fisheye: Adaptation of a ROI based object pose estimation network to monocular fisheye images. IEEE Robotics and Automation Letters, 5(3), 4241-4248.
- Discipline:
- Engineering
-
- Creator:
- Jenkins, G. J. and Bougher, S. W.
- Description:
- In early 2019, the Mars Atmosphere and Volatile Evolution (MAVEN) mission underwent an ~2-month aerobraking campaign, during which time the spacecraft periapsis altitude was lowered from its nominal altitude range of 140-160 km to as low as ~123 km. Excluding spacecraft walk-in/out maneuvers, accelerometer measurements were made along 272 orbits with coverage spanning Ls 340-3°, latitudes ~5-54°S, longitudes 0-360°, and Local Solar Time (LST) ~22-17 hours. In this study, we perform a diagnostic analysis of the full aerobraking data set by fitting 4-harmonic waves to mass densities. We then study the variations of these waves as a function of latitude with an emphasis on those observed previously in Mars’ thermosphere by MAVEN and other missions. Additionally, we utilize data collected during the same time period from the Mars Reconnaissance Orbiter’s Mars Climate Sounder to study the vertical propagation of waves originating from the middle atmosphere. Key results indicate that normalized wave amplitudes decrease with latitude, and this is consistent with the latitudinal structure of a diurnal Kelvin mode. We also observe that waves imprinted from the middle atmosphere show normalized amplitude growth with increasing altitude. A complete summary of data sets, analysis methodology, and scientific results is given. The purpose of this study is to add to the body of knowledge surrounding Martian atmospheric wave features and to provide further constraints for future numerical modeling and subsequent tidal mode identification.
- Keyword:
- MAVEN, Mars Thermosphere, Accelerometer Data Set, Global Data Set, and Wave Analysis of Tides
- Citation to related publication:
- Jenkins, G. A., Bougher, S. W., Lugo, R., Tolson, R. H., Zurek, R. W., Baird, D., Steele, L., Kass, D., Withers, P. (2023), MAVEN Accelerometer Observations of Thermospheric Densities during Aerobraking and Deep Dip 2: Wave Features and Connections to Upward Propagating Thermal Tides, Journal of Geophysical Research: Planets, xx, xx.
- Discipline:
- Science
-
- Creator:
- Raghani, Ravi M, Urie, Russell R, and Shea, Lonnie D
- Description:
- The IN were sampled during and after ICB and sequenced to identify gene expression signatures that correlated with sensitivity or resistance. We also analyzed gene expression at the IN prior to ICB treatment to identify markers predicting therapeutic response. Longitudinally interrogating an IN, to monitor changes associated with ICB response, presents a new opportunity to personalize care and investigate mechanisms underlying treatment resistance.
- Keyword:
- Immunotherapy resistance, Biomaterials, Metastasis, Checkpoint blockade, and Therapy monitoring
- Discipline:
- Engineering and Health Sciences
-
- Creator:
- Galaty, Michael L. and Bejko, Lorenc
- Description:
- This work contains documentation for the entire Projekti Arkeologjik i Shkodrës (PASH) data set, which has been organized into a series of collections and works in the Deep Blue Data repository to facilitate access and navigation. The data presented here accompany a two-volume research report, published by the University of Michigan Museum of Anthropological Archaeology Press (Galaty and Bejko 2023--see below).
- Keyword:
- archaeology
- Citation to related publication:
- Galaty, M. L., & Bejko, L. (Eds.). (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 1). University of Michigan Press. https://doi.org/10.3998/mpub.12201317 and Galaty, M. L., & Bejko, L. (2023). Archaeological Investigations in a Northern Albanian Province: Results of the Projekti Arkeologjik i Shkodrës (PASH) (Vol. 2). University of Michigan Press. https://doi.org/10.3998/mpub.12208577
- Discipline:
- Humanities
-
- Creator:
- Cuyler, Antonio, Carruthers, Matthew, and Imbesi, Jason
- Description:
- we conducted an emergent qualitative systematic content analysis of scholarship published in Cultural Trends, the International Journal of Cultural Policy, and the Journal of Arts Management, Law, and Society since the peer-reviewed journals’ inceptions.
- Keyword:
- content analysis, cultural policy, and oppression
- Discipline:
- Humanities and Arts
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 632 x 853 x 1 voxel at 0.02187606 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1972 TIF images (each 632 x 853 x 1 voxel at 0.021876 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Raw Dataset includes 1801 TIF images (each 637 x 456 x 1 voxel at 0.05305043 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252706 (Eigenmannia viricens). Reconstructed Dataset includes 1945 TIF images (each 637 x 456 x 1 voxel at 0.053050 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Gymnotiformes, Sternopygidae, Eigenmannia viricens, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 888 x 988 x 1 voxel at 0.029451 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 888 x 988 x 1 voxel at 0.02945109 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Reconstructed Dataset includes 1217 TIF images (each 1433 x 1028 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri) - Skull. Raw Dataset includes 1801 TIF images (each 1433 x 1028 x 1 voxel at 0.01759157 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Reconstructed Dataset includes 1851 TIF images (each 1221 x 1165 x 1 voxel at 0.016589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata) - Skull. Raw Dataset includes 2401 TIF images (each 1221 x 1165 x 1 voxel at 0.01658923 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Raw Dataset includes 1801 TIF images (each 544 x 834 x 1 voxel at 0.03868037 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252559 (Cyphocharax fowleri). Reconstructed Dataset includes 2000 TIF images (each 544 x 834 x 1 voxel at 0.038680 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Curimatidae, Cyphocharax fowleri, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 374 x 555 x 1 voxel at 0.03162589 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1729 TIF images (each 374 x 555 x 1 voxel at 0.031626 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 2401 TIF images (each 521 x 643 x 1 voxel at 0.04052231 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1970 TIF images (each 521 x 643 x 1 voxel at 0.040522 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 630 x 347 x 1 voxel at 0.04505992 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 630 x 347 x 1 voxel at 0.045060 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 709 x 798 x 1 voxel at 0.082618 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 3141 TIF images (each 709 x 798 x 1 voxel at 0.08261846 mm resolution, derived from 3141 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 518 x 762 x 1 voxel at 0.040341 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 518 x 762 x 1 voxel at 0.04034065 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 797 x 753 x 1 voxel at 0.08151283 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 797 x 753 x 1 voxel at 0.081513 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 501 x 454 x 1 voxel at 0.08823032 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 1938 TIF images (each 501 x 454 x 1 voxel at 0.088230 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Reconstructed Dataset includes 2000 TIF images (each 480 x 677 x 1 voxel at 0.082385 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:252549 (Bivibranchia bimaculata). Raw Dataset includes 1601 TIF images (each 480 x 677 x 1 voxel at 0.0823851 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Actinopterygii, Characiformes, Hemiodontidae, Bivibranchia bimaculata, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1949 TIF images (each 583 x 953 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 583 x 953 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Raw Dataset includes 1801 TIF images (each 1353 x 1576 x 1 voxel at 0.02222504 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876) - Skull. Reconstructed Dataset includes 1399 TIF images (each 1353 x 1576 x 1 voxel at 0.022225 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Reconstructed Dataset includes 2000 TIF images (each 554 x 759 x 1 voxel at 0.055272 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:207781 (Curimatus bimaculatus Steindachner, 1876). Raw Dataset includes 1801 TIF images (each 554 x 759 x 1 voxel at 0.05527194 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Characiformes, Curimatidae, Curimatus bimaculatus Steindachner, 1876, 1889109133, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889109133 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1964 TIF images (each 572 x 784 x 1 voxel at 0.035928 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2401 TIF images (each 572 x 784 x 1 voxel at 0.03592832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 745 x 780 x 1 voxel at 0.06201822 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 745 x 780 x 1 voxel at 0.062018 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 693 x 471 x 1 voxel at 0.040486 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 693 x 471 x 1 voxel at 0.04048587 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 703 x 808 x 1 voxel at 0.07640627 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 1912 TIF images (each 703 x 808 x 1 voxel at 0.076406 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 820 x 704 x 1 voxel at 0.039218 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 820 x 704 x 1 voxel at 0.0392176 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Reconstructed Dataset includes 2000 TIF images (each 574 x 626 x 1 voxel at 0.075148 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206086 (Crenicichla lepidota Heckel, 1840). Raw Dataset includes 1601 TIF images (each 574 x 626 x 1 voxel at 0.07514755 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Crenicichla lepidota Heckel, 1840, 1889107441, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889107441 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 717 x 688 x 1 voxel at 0.06149898 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1874 TIF images (each 717 x 688 x 1 voxel at 0.061499 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 976 x 737 x 1 voxel at 0.05842386 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 976 x 737 x 1 voxel at 0.058424 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 1923 TIF images (each 663 x 1263 x 1 voxel at 0.027589 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 1601 TIF images (each 663 x 1263 x 1 voxel at 0.02758892 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Raw Dataset includes 1601 TIF images (each 678 x 1023 x 1 voxel at 0.05847154 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:203495 (Satanoperca jurupari (Heckel, 1840)). Reconstructed Dataset includes 2000 TIF images (each 678 x 1023 x 1 voxel at 0.058472 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Satanoperca jurupari (Heckel, 1840), 1889104867, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889104867 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Reconstructed Dataset includes 1395 TIF images (each 1166 x 1597 x 1 voxel at 0.018640 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)) - Skull. Raw Dataset includes 2401 TIF images (each 1166 x 1597 x 1 voxel at 0.01863954 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Raw Dataset includes 2401 TIF images (each 937 x 607 x 1 voxel at 0.07686836 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:185695 (Myripristis multiradiatus Günther, 1874). Reconstructed Dataset includes 2000 TIF images (each 937 x 607 x 1 voxel at 0.076868 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Beryciformes, Holocentridae, Myripristis multiradiatus Günther, 1874, 1889087579, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889087579 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- Pedde, Meredith
- Description:
- In this study, we took advantage of the randomized allocation of the US EPA's funding for school bus replacements and retrofits to causally assess the impacts of upgrading buses on student attendance through the EPA’s national School Bus Rebate Program. Specifically, we used classical intent-to-treat analyses for randomized controlled trials to compare the change in school district level attendance rates after vs before the 2012 through 2017 lotteries by funding selection status . We used overall district attendance rates since rates were not available for only school-bus riders.
- Keyword:
- School Bus Emissions, Diesel Air Pollution, and School Attendance
- Citation to related publication:
- Pedde, M., Szpiro, A., Hirth, R. et al. Randomized design evidence of the attendance benefits of the EPA School Bus Rebate Program. Nat Sustain (2023). https://doi.org/10.1038/s41893-023-01088-7
- Discipline:
- Health Sciences
-
Computed tomography voxel dataset for ummz:fish:240774-Channa limbata (Cuvier, 1831)-14d_etoh-DiceCT
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 652 x 614 x 1 voxel at 0.082357 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 652 x 614 x 1 voxel at 0.08235723 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 581 x 834 x 1 voxel at 0.08030222 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 1972 TIF images (each 581 x 834 x 1 voxel at 0.080302 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Reconstructed Dataset includes 2000 TIF images (each 741 x 682 x 1 voxel at 0.024076 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:216417 (Acarichthys heckeli (Müller & Troschel, 1849)). Raw Dataset includes 2001 TIF images (each 741 x 682 x 1 voxel at 0.02407626 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Cichlidae, Acarichthys heckeli (Müller & Troschel, 1849), 1889117016, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889117016 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Reconstructed Dataset includes 2000 TIF images (each 1021 x 1177 x 1 voxel at 0.068930 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:251870 (Pristolepis fasciatus (Bleeker, 1851)). Raw Dataset includes 1601 TIF images (each 1021 x 1177 x 1 voxel at 0.06893014 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pristolepididae, Pristolepis fasciatus (Bleeker, 1851), 2237210368, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/2237210368 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Raw Dataset includes 1801 TIF images (each 667 x 582 x 1 voxel at 0.03322767 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)). Reconstructed Dataset includes 2000 TIF images (each 667 x 582 x 1 voxel at 0.033228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Raw Dataset includes 2001 TIF images (each 1229 x 855 x 1 voxel at 0.02452474 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986) - Skull. Reconstructed Dataset includes 1883 TIF images (each 1229 x 855 x 1 voxel at 0.024525 mm resolution, derived from 2001 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1825 TIF images (each 971 x 763 x 1 voxel at 0.048959 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 971 x 763 x 1 voxel at 0.04895912 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1899 TIF images (each 792 x 1999 x 1 voxel at 0.028030 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 792 x 1999 x 1 voxel at 0.02803018 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Raw Dataset includes 2401 TIF images (each 368 x 397 x 1 voxel at 0.06675832 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:243168 (Macrognathus semiocellatus Roberts, 1986). Reconstructed Dataset includes 1982 TIF images (each 368 x 397 x 1 voxel at 0.066758 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Synbranchiformes, Mastacembelidae, Macrognathus semiocellatus Roberts, 1986, 1889141483, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889141483 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 2000 TIF images (each 789 x 814 x 1 voxel at 0.041352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 789 x 814 x 1 voxel at 0.04135232 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 665 x 474 x 1 voxel at 0.08304352 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1979 TIF images (each 665 x 474 x 1 voxel at 0.083044 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Reconstructed Dataset includes 2000 TIF images (each 661 x 603 x 1 voxel at 0.082827 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:240774 (Channa limbata (Cuvier, 1831)). Raw Dataset includes 1601 TIF images (each 661 x 603 x 1 voxel at 0.08282655 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Channidae, Channa limbata (Cuvier, 1831), 1889139164, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889139164 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Raw Dataset includes 2401 TIF images (each 745 x 669 x 1 voxel at 0.03313194 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:183100 (Parapriacanthus ransonneti Steindachner, 1870). Reconstructed Dataset includes 1982 TIF images (each 745 x 669 x 1 voxel at 0.033132 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Pempheridae, Parapriacanthus ransonneti Steindachner, 1870, 1889085089, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889085089 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Reconstructed Dataset includes 1987 TIF images (each 683 x 585 x 1 voxel at 0.067089 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:218102 (Anabas testudineus (Bloch, 1792)). Raw Dataset includes 2401 TIF images (each 683 x 585 x 1 voxel at 0.06708945 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Perciformes, Anabantidae, Anabas testudineus (Bloch, 1792), 1889118619, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889118619 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Raw Dataset includes 2401 TIF images (each 1316 x 1285 x 1 voxel at 0.02652906 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:227765 (Argyropelecus aculeatus Valenciennes, 1850). Reconstructed Dataset includes 1471 TIF images (each 1316 x 1285 x 1 voxel at 0.026529 mm resolution, derived from 2401 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Stomiiformes, Sternoptychidae, Argyropelecus aculeatus Valenciennes, 1850, 1889127527, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889127527 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Raw Dataset includes 1801 TIF images (each 1376 x 1066 x 1 voxel at 0.01759152 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)) - Skull. Reconstructed Dataset includes 1511 TIF images (each 1376 x 1066 x 1 voxel at 0.017592 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Reconstructed Dataset includes 2000 TIF images (each 1423 x 622 x 1 voxel at 0.047137 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:172750 (Achirus lineatus (Linnaeus, 1758)). Raw Dataset includes 1801 TIF images (each 1423 x 622 x 1 voxel at 0.04713662 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Pleuronectiformes, Achiridae, Achirus lineatus (Linnaeus, 1758), 1889075287, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889075287 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Reconstructed Dataset includes 1827 TIF images (each 1439 x 1229 x 1 voxel at 0.016076 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:206739 (Ancistrus cirrhosus (Valenciennes, 1836)) - Skull. Raw Dataset includes 1801 TIF images (each 1439 x 1229 x 1 voxel at 0.01607582 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Loricariidae, Ancistrus cirrhosus (Valenciennes, 1836), 1889108051, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889108051 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Raw Dataset includes 1801 TIF images (each 503 x 663 x 1 voxel at 0.0382276 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:fish:165173 (Noturus gyrinus (Mitchill, 1817)). Reconstructed Dataset includes 1775 TIF images (each 503 x 663 x 1 voxel at 0.038228 mm resolution, derived from 1801 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Siluriformes, Ictaluridae, Noturus gyrinus (Mitchill, 1817), 1889067832, computed tomography, X-ray, 3D, and DiceCT
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1889067832 and DiceCT for Fishes: Recommendations for pairing iodine contrast agents with μCT to visualize soft tissues in fishes https://doi.org/10.1111/jfb.15320
- Discipline:
- Science
-
- Creator:
- George De la Rosa, Mery Vet, Patel, Dipali, McCann, Marc R., Stringer, Kathleen A., and Rosania, Gus R.
- Description:
- These data were produced from a study that employed a database strategy to identify candidate mitochondrial metabolites that could be clinically useful to identify individuals at increased risk of mitochondrial-related ADRs. The main candidate metabolite identified by the database strategy was evaluated using a mouse model of mitochondrial drug toxicity. These findings are described in our manuscript: Database Screening as a Strategy to Identify Endogenous Candidate Metabolites to Probe and Assess Mitochondrial Drug Toxicity. Data reported was supported by funding from the National Institute of General Medical Sciences (NIGMS) at the National Institutes of Health (NIH) under award numbers R01GM127787 (GRR) & R35GM136312 (KAS).
- Keyword:
- mitochondrial-realted metabolites, adverse drug reactions, and mitochondrial drug toxicity
- Discipline:
- Health Sciences
-
- Creator:
- Bressler, Alison and Blesh, Jennifer
- Description:
- This dataset contains three data files and three corresponding metadata files used in Bressler, A., and J. Blesh. 2023. A grass-legume cover crop maintains nitrogen inputs and nitrous oxide fluxes from an organic agroecosystem. Ecosphere. The file “N2O_Flux.xls” contains daily nitrous oxide data organized by replicate block, treatment, and date. The file “Soil_N.xls” contains nitrate and ammonium data organized by replicate block, treatment, and date. The file “Cover_crop_corn_soil.xls” contains baseline soil fertility characteristics, cover crop and corn biomass, nitrogen and carbon content, legume BNF, and cumulative N2O content organized by replicate block and treatment. The corresponding metadata files: “N2O_Flux_metadata.xls”, “Soil_N_metadata.xls”, and “Cover_crop_corn_soil_metadata.xls” provide detailed descriptions of all variables in each data set and any abbreviations used.
- Keyword:
- cover crops, nitrous oxide, corn, biological nitrogen fixation, and legume-grass mixtures
- Citation to related publication:
- Bressler, A., and J. Blesh. 2023. A grass-legume cover crop maintains nitrogen inputs and nitrous oxide fluxes from an organic agroecosystem. Ecosphere. 14(2): e4428. https://doi.org/10.1002/ecs2.4428
- Discipline:
- Science
-
- Creator:
- Su, Xue, Zhang, Youxue, Liu, Yang, and Holder, Robert M.
- Description:
- It is commonly thought that volcanic glass only records volatile loss during the eruptions in the Moon. However, our recent work shows that Na, K and Cu (moderately volatile elements) in lunar 74220 orange glass beads are enriched near the bead surfaces and depleted in the bead interiors, forming an overall “U-shaped” profile. The “U-shaped” profile means that rather than being “lost” into space, Na, K and Cu were “gained” into the volcanic glass during the eruption, which is contrary to the “volatile loss” story. Three different instruments (EMP, SIMS and LA-ICP-MS) were used to verify the discovery. We propose that such U-shaped Na, K and Cu profiles were formed by initial outgassing and subsequent in-gassing of Na, K and Cu when the beads were flying from the vent onto the surface through the cooling volcanic gas plume. Hence, in-gassing and the formation of surface coatings are two processes that are genetically linked during the pyroclastic eruption and evolution of the gas cloud. To quantify the processes that formed the U-shaped profiles, we developed a diffusion and surface-equilibrium model using available literature data on Na and Cu diffusivity in basaltic melts. The model reproduced U-shaped Na and Cu concentration profiles with outgassing at high temperature and subsequent in-gassing as beads cooled. By fitting the measured Na and Cu profiles, we found that the cooling time scales of individual orange glass beads range from 48 to 179 s. This is the first time that both outgassing and in-gassing were modeled and the cooling time scales of individual 74220 volcanic orange glass beads were estimated. The discovery of the U-shaped profiles of moderately volatile elements inside volcanic beads provides significant constraints on partial pressures of relevant volcanic gas species in the eruption plume.
- Keyword:
- Moon, Volcanic orange glass beads, Moderately volatile elements, Outgassing and in-gassing, and Cooling time scales
- Citation to related publication:
- Su, X., Zhang, Y., Liu, Y. and Holder, R.M. (2023) Outgassing and in-gassing of Na, K and Cu in lunar 74220 orange glass beads. Earth and Planetary Science Letters 602. https://doi.org/10.1016/j.epsl.2022.117924
- Discipline:
- Science
-
- Creator:
- Reynolds, Mack B., Hong, Hanna S., Zhang, Li, Lyssiotis, Costas A., and O'Riordan, Mary X.
- Description:
- Untargeted lipidomics (Data S1) and targeted metabolomics (Data S2) analysis from in vitro culture of a murine macrophage cell line expressing shRNA targeted to Cardiolipin synthase (CRLS1), referred to as CRLS1 knockdown (KD), or a paired non-target shRNA-expressing (NT-Control). CRLS1 KD and NT-Control macrophages were either directly analyzed (untargeted lipidomics) or stimulated with lipopolysaccharide for a variety of timepoints and then analyzed (targeted metabolomics). Datasets are available as .csv files.
- Keyword:
- Lipidomics, Metabolomics, Cardiolipin, Macrophage, CRLS1, lipopolysaccharide, and LPS
- Citation to related publication:
- Reynolds M.B. et al. (2023). Cardiolipin coordinates inflammatory metabolic reprogramming through regulation of Complex II disassembly and degradation. Science Advances, 9(5). DOI: 10.1126/sciadv.ade8701
- Discipline:
- Health Sciences
-
- Creator:
- University of Michigan Museum of Paleontology and Micro and Nano CT Advanced Imaging Core, Orthopaedic Research Laboratories, University of Michigan
- Description:
- Reconstructed CT slices for UMMP VP 118710 Mammuthus primigenius proximal tusk segment as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, and 4760d0fa-a763-23d2-1be9-89bb1aaf711c
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentostry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118186 Loxodonta africana tusk core as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, and a4f83cc6-09f2-0032-8a09-60ea798f787c
- Discipline:
- Science
-
- Creator:
- Bougher, Stephen W. and Roeten, Kali J.
- Description:
- The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking daily (systematic) measurements of the densities and temperatures in the upper atmosphere of Mars between about 140 to 240 km above the surface. Wind measurement campaigns are also conducted once per month for 5-10 orbits. These densities, temperatures and winds change with time (e.g. season, local time) and location, and sometimes fluctuate quickly. Global dust storm events are also known to significantly impact these density, temperature and wind fields in the Mars thermosphere. Such global dust storm period measurements can be compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. This is an ongoing detailed comparison between direct global dust storm period measurements in the upper atmosphere of Mars and simulated MGITM fields and is important because it can help to inform us what physical processes are acting on the upper atmosphere during such large dust events. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars also provides key context for understanding how the atmosphere behaves as a whole system. A basic version of the M-GITM code can be found on Github as follows: https:/github.com/dpawlows/MGITM [less] About 4 months of Neutral Gas and Ion Mass Spectrometer (NGIMS) measurements of densities and winds have been made by the MAVEN team during the summer of 2018 (Elrod et al., 2019; Roeten et al 2022). For this specialized archive (Elrod et al. 2023), one reference measurement interval during this 2018 global dust storm (30-31 August 2018) is selected for detailed study of helium distributions (Elrod et al. 2023). The Mars conditions for this last of nine intervals have been used to launch corresponding M-GITM code simulations, yielding 3-D neutral density, temperature and wind fields for comparison to these NGIMS measurements. This last interval is used to provide M-GITM datacubes to explicitly extract the helium density (plus corresponding temperatures and neutral winds) along the trajectory of each orbit path between 140 and 240 km . A general README file is also provided for this Deep Blue Data archive detailing the contents of each file, while also summarizing the inputs and outputs of the M-GITM code simulations for this study.
- Keyword:
- Mars , NASA MAVEN spacecraft, Mars Thermosphere, Global Dust Strom of 2018, and Helium distribution
- Citation to related publication:
- Elrod, M. K., S. W. Bougher, K. Roeten, R. Sharrar, J. Murphy, Structural and Compositional Changes in the Upper Atmosphere related to the PEDE-2018 Dust Event on Mars as Observed by MAVEN NGIMS, Geophys. Res. Lett., (2019). doi: 10.1029/2019GL084378. and Elrod, M. K., S. W. Bougher, K. Roeten and K. Arnold, Surprising Decrease in the Martian He Bulge during PEDE-2018 and Changes in Upper Atmospheric Circulation, J. Geophysical Research, (2023), doi:XXX
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for tusk block number 2 of Mammuthus primigenius (University of Michigan Museum of Paleontology catalog number UMMP VP 118711) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentistry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118711 Mammuthus primigenius block number 10 (distalmost) removed from tusk as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology, University of Michigan School of Dentistry MicroCT Core, and Lynch, Michelle
- Description:
- Reconstructed CT slices for UMMP VP 118711 Mammuthus primigenius block number 1 (proximalmost) removed from tusk as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, Pleistocene, and eb7acb05-b8b5-9642-b90a-b7d49a83de4d
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey
- Description:
- A subset of the Kelenga recordings are being transcribed and will serve as data for the Kelenga reference grammar which, when finished, will be included in the collection "Bozo languages of Mali (documents)" in Deep Blue Documents (see link).
- Keyword:
- Bozo and Kelenga
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- these and other recordings are data for a reference grammar of Kelenga that, when completed, will be archived in the collection "Bozo languages of Mali (documents)" in Deep Blue Documents. For contents see the "notes" file inside the work. A few of the Kelenga texts are being transcribed, others will be left for others to transcribe or listen to as they wish.
- Keyword:
- Bozo and Kelenga
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- recordings made in Barato village. Referred to as "text 2021-02" and "text 2021-03." Text 2021-03 is transcribed and annotated at the end of the reference grammar (see link to Deep Blue Documents). Text 2021-02 covers a subset of the same content and has not been transcribed as of late 2022. See also "notes" file inside the work.
- Keyword:
- Bozo, Jenaama, Sorogaama
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- recording in mp3 format. The reference grammar (see link to Deep Blue Documents) presents transcription and analysis as "text 2021-01."
- Keyword:
- Bozo, Jenaama, Sorogaama
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- For content see the "notes" file inside the work. Most of the recordings are translated and annotated at the end of the reference grammar (see link to Deep Blue Documents).
- Keyword:
- Bozo, Jenaama, Cliffs
- Discipline:
- Humanities
-
- Creator:
- Yu, Chi-Lin, Eggleston, Rachel, Zhang, Kehui, Nickerson, Nia, Sun, Xin, Marks, Rebecca A., Hu, Xiaosu, Brennan, Jonathan R. , Wellman, Henry M. , and Kovelman, Ioulia
- Description:
- The dataset includes 51 children (age range = 6-12 years) who listened to the first chapter of Alice’s Adventures in Wonderland during fNIRS neuroimaging. We also provide the text of the story with several word-by-word predictors motivated by research in Theory of Mind development and language. These annotated, naturalistic datasets can be used to replicate prior work and test new hypotheses about everyday social cognition and natural language comprehension in the developing brain.
- Keyword:
- neuroimaging, fNIRS, Children, Theory of Mind, Language, Naturalistic Neuroscience, and Story Listening
- Discipline:
- Science
-
Bozo languages of Mali (spreadsheets, media)
User Collection- Creator:
- Heath, Jeffrey G.
- Description:
- This collection will archive lexical spreadsheets, audio files, geographic information, images, and videos that complement the reference grammars in pdf and docx form in the collection “Bozo languages of Mali (documents)” that are archived in Deep Blue Documents ( https://dx.doi.org/10.7302/6632). See the “readme” for that collection and the introductory material in the reference grammars for general information about the languages and the fieldwork., The initial material archived in the present collection consists of audio files. They are recordings of narratives, interviews, and conversations. Some of them have been transcribed and are presented as appendices in the reference grammars. Others have not been transcribed; they are presented here in the hope that they can eventually be transcribed or at least listened to by native speakers. If the author is able to transcribe some of them in the future, the transcriptions will be added here (and to the Deep Blue Documents collection)., Many of the recordings, as well as most of the images and videos to be added to this collection, have been made by project assistant Minkailou Djiguiba. He has courageously traveled into Bozo-speaking zones, some of which are highly insecure, to do this work. In addition, he has been instrumental in recruiting and transporting Bozo speakers to the author’s base in Bobo Dioulasso where much of the grammatical and lexical work has been done., and The author’s fieldwork is supported by grant PD-1941828 (2020-2024) from the National Science Foundation, Documenting Endangered Languages program, which is also supported by the National Endowment for the Humanities.
- Keyword:
- Bozo, Jenaama, Cliffs, Kelenga, Tigemaxo, and Tiéyaxo
- Discipline:
- Humanities
5Works -
Supporting data: Domain-agnostic predictions of nanoscale interactions in proteins and nanoparticles
- Creator:
- Saldinger, Jacob, Raymond, Matt , Elvati, Paolo, and Violi, Angela
- Description:
- The accurate and rapid prediction of generic nanoscale interactions is a challenging problem with broad applications. Much of biology functions at the nanoscale, and our ability to manipulate materials and purposefully engage biological machinery requires knowledge of nano-bio interfaces. While several protein-protein interaction models are available, they leverage protein-specific information, limiting their abstraction to other structures. Here, we present NeCLAS, a general, and rapid machine learning pipeline that predicts the location of nanoscale interactions, providing human-intelligible predictions. Two key aspects distinguish NeCLAS: coarse-grained representations, and the use of environmental features to encode the chemical neighborhood. We showcase NeCLAS with challenges for protein-protein, protein-nanoparticle and nanoparticle-nanoparticle systems, demonstrating that NeCLAS replicates computationally- and experimentally-observed interactions. NeCLAS outperforms current nanoscale prediction models, and it shows cross-domain validity, qualifying as a tool for basic research, rapid prototyping, and design of nanostructures., Software: - To reproduce all-atom molecular dynamics (MD) NAMD is required (version 2.14 or later is suggested). NAMD software and documentation can be found at https://www.ks.uiuc.edu/Research/namd/, - To reproduce coarse-grained MD simulations, LAMMPS (version 29 Sep 2021 - Update 2 or later is suggested). LAMMPS software and documentation can be found at https://www.lammps.org, - To rebuild free energy profiles, the PLUMED plugin (version 2.6) was used. PLUMED software and documentation can be found at https://www.plumed.org/ , and - To generate force matching potentials, the was used the OpenMSCG software was used. OpenMSCG software and documentation can be found at https://software.rcc.uchicago.edu/mscg/
- Keyword:
- Neural Networks, Proteins, Dimensionality Reduction, Nanoparticles, and Coarse-Graining
- Citation to related publication:
- https://www.biorxiv.org/content/10.1101/2022.08.09.503361v2
- Discipline:
- Science
-
- Creator:
- Ponder, Brandon M., Ridley, Aaron J., Goel, Ankit, and Bernstein, Dennis S.
- Description:
- This research was completed to statistically validate that a data-model refinement technique could integrate real measurements to remove bias from physics-based models via changing the forcing parameters such as the thermal conductivity coefficients.
- Keyword:
- Thermosphere, GITM, CHAMP, GRACE, MSIS, Upper Atmosphere Modeling, and Data Assimilation
- Citation to related publication:
- Ponder, B. M., Ridley, A. J., Goel, A., & Bernstein, D. S. (2023). Improving forecasting ability of GITM using data-driven model refinement. Space Weather, 21, e2022SW003290. https://doi.org/10.1029/2022SW003290
- Discipline:
- Engineering and Science
-
- Creator:
- Zelditch, Miriam L. and Swiderski, Donald L.
- Description:
- Each row in the file contains the museum ID (museum where the specimen is located and the accession number), the species name, and the values for centroid size, followed by the x,y coordinates for each landmark. Any program that can read in a csv file can read this file.
- Keyword:
- Shape, Sciuridae, mandibles
- Citation to related publication:
- Zelditch, M.L., Swiderski, D.L. The Predictable Complexity of Evolutionary Allometry. Evol Biol (2022). https://doi.org/10.1007/s11692-022-09581-1
- Discipline:
- Science
-
- Creator:
- Szuromi, Matthew P. and Stacey, William C.
- Description:
- The data and scripts are meant to show how burster dynamics determine response to a single biphasic stimulus. The files include data which show trends in the propensity of termination for different burster types and the MATLAB scripts used to generate this data. The MATLAB scripts also allow the user to generate their own data sets for alternative bursting paths and stimulus parameter combinations. Furthermore, they allow the user to visually examine the effects of single stimuli in the voltage timeseries and in state space. How the user can access these features of the script is described in the file "ReadMe.pdf."
- Keyword:
- Epilepsy, Stimulation, Modelling, Dynamics, Seizure, and Dynamotype
- Citation to related publication:
- (PROVISIONAL) Optimization of Ictal Aborting Stimulation Using the Dynamotype Taxonomy
- Discipline:
- Health Sciences, Engineering, and Science
-
- Creator:
- Lin, Jack and Stacey, William C.
- Description:
- The characterization of HFO networks through functional connectivity analysis and network centrality. Details of the code repository can be found in the README.txt file.
- Keyword:
- Epilepsy, High Frequency Oscillation, HFO, Network, and EEG
- Citation to related publication:
- Pending
- Discipline:
- Health Sciences
-
- Creator:
- Walker, Logan A, Li, Ye, McGlothlin, Maggie, and Cai, Dawen
- Description:
- These are datasets released from our manuscript "A Comparison of Lossless Compression Methods in Microscopy Data Storage Applications". Included in this data release are: `noise16.tif`: a file containing background noise collected from a 1000-frame acquisition of a ORCA-Fusion camera; `noise8.tif`: a file containing the 16-bit data collective above converted into a 8-bit form; `brainbow.tif`: This is a mouse Brainbow image originally published and described in Roossien, et al. Bioinformatics 2019; `bead.tif`: This is a 3D image of 100nm Invitrogen TetraSpeck fluorescent microspheres imaged in a blue channel using a custom microscope; `fly.tif`: This is a 3D image of a fly Bitbow brain collected as described in Li, et al. Front. Neural Circuits 2021; and `neurite.tif`: This is a 3D image of DiD-labeled mouse V1 tissue, collected using a custom microscope.
- Keyword:
- neuroscience, microscopy, and Bitbow
- Discipline:
- Health Sciences
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for Posterior cranium fragment (juvenile) of Dorudon atrox (University of Michigan Museum of Paleontology catalog number UMMP VP 100142) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Basilosauridae, Eocene, CTEES, UMMP, University of Michigan Museum of Paleontology, and a470edbc-75b1-f352-d947-330dd1043256
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for postcrania (cervical vertebrae, L+R humerus, R scapula, R coracoid, L femur) of Stylemys nebrascensis (University of Michigan Museum of Paleontology catalog number UMMP VP 9318) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Testudinidae, UMMP, University of Michigan Museum of Paleontology, Oligocene, CTEES, and c38728f5-6f38-d862-7bcf-9745e69db222
- Citation to related publication:
- University of Michigan Museum of Paleontology, CTEES. (2022). CT Data of UMMP VP 9318, Stylemys nebrascensis skull [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/74pd-kb09
- Discipline:
- Science
-
Survey Data
User Collection- Creator:
- Galaty, Michael
- Description:
- All databases, field notebooks, paper maps, GIS files, photographs, and photo descriptions related to the intensive survey, of tracts and tumuli, and the collection of sites have been made available in PASH Deep Blue Data Realm 1. The data are broadly organized by team (A-K). The surveyed land was divided up into “tracts”. Tracts are labeled with team letter and a consecutive number: e.g., A-001, A-002, B-003, C-122, D-035.
- Keyword:
- Archaeology
- Discipline:
- Science
6Works -
- Creator:
- Eckels, Joshua D.
- Description:
- The goal of the research was to train a surrogate model for the prediction of electric field distribution for a given electrospray emitter geometry design. The surrogate is to be used in reduced-fidelity modeling of electrospray thruster arrays. The code repository is included in the README.txt file.
- Keyword:
- Electrospray design, Martinez-Sanchez hyperboloid solution, and Electrospray engineering toolkit (ESPET)
- Citation to related publication:
- J.D. Eckels, C.B. Whittaker, B.A. Jorns, A.A. Gorodetsky, B. St. Peter, R.A. Dressler, “Simulation-based surrogate methodology of electric field for electrospray emitter geometry design and uncertainty quantification”, presented at the 37th International Electric Propulsion Conference, Boston, MA USA, June19-23, 2022 Available: https://www.electricrocket.org/IEPC_2022_Papers.html
- Discipline:
- Engineering
-
- Creator:
- Hero, Alfred O, Zhai, Yaya, Burke, Thomas, Doraiswamy, Murali, Ginsburg, Geoffrey S, Henao, Ricardo, Turner, Ronald B, and Woods, Christopher W
- Description:
- The data deposited here is as follows: The clinical shedding/symptom data, RNAseq, steroid, and wearable E4 data was partially presented in publications [1]-[3] and the cognitive lumos and VAFS data is presented in the paper [4], which is under review and embargoed. The data files are: subject.json, sample.json, and genematrix_TPM.csv. In addition, a copy of the blank consent form used to enroll volunteers in the study is included (17964_Adult Consent_2015Mar17-Mod 1_clean.pdf)., Clinical symptom and viral shedding data (in subject.json): reports each subject's accumulated and maximum self-reported symptom score (modified Jackson score) and shedding titrations from nasal-pharyngeal washes after inoculation. , RNAseq data (genematrix_TMP.csv): Whole blood was collected in PAXgene™ Blood RNA tubes (PreAnalytiX), and total RNA extracted using the PAXgene™ Blood miRNA Kit (QIAGEN) using the manufacturer’s recommended protocol. RNA quantity and quality were assessed using Nanodrop 2000 spectrophotometer (Thermo-Fisher) and Bioanalyzer 2100 with RNA 6000 Nano Chips (Agilent). RNA sequencing libraries were prepared using Illumina TruSeq mRNA Library Kit with RiboZero Globin depletion, and sequenced on an Illumina NextSeq sequencer with 50bp paired-end reads (target 40M reads per sample). After demultiplexing to FASTQ paired-end read counts files, the 396 samples were TPM transformed using HISAT2 software with the reference genome Homo_sapiens.GRCh38.84. Each sample corresponds to one of the 18 subjects at one of 22 time points. One of these samples was of insufficient quality to be mapped to read counts. In addition to the TPM normalized RNAseq data contained in this repository, the raw FASTQ data for the 395 samples are deposited in the GEO repository ( https://www.ncbi.nlm.nih.gov/geo), Accession # GSE215087. , Cognitive data (sample.json): Outcomes from a NeuroCognitive Performance Test (NCPT) that was taken approximately 3 time daily by all volunteers. The NCPT is a repeatable, web-based, computerized, cognitive assessment platform designed to measure subtle changes in performance across multiple cognitive domains. Subject scores along 18 cognitive variables data were collected at approximated 22 time points during the challenge study. The data structure sample.json contains the raw cognitive data and the extracted 18 cognitive scores over time for each subject. , The Visual Analog Fatigue Scale (sample.json): the VAFS is a measure of cognitive fatigue that was measured approximately 3 times per day at the same time as the NCPT and blood draw. , Wearable device data (sample.json): participants wore an Empatica E4 device for the duration of the challenge study. Summarized features are provided for each subject that include sleep duration (mean and std), sleep offset (mean and std), and temperature (mean and std). , Steroid data was also collected and is included in the sample.json. This steroid data was collected from the whole blood samples and consists of cortisol, melatonin, and DHEAS. , and See README.txt for more specific details on the data structures contained in the sample.json, subject.json, and genematrix_TPM.csv files.
- Keyword:
- human challenge study and cognitive health and immunity
- Citation to related publication:
- X She, Y Zhai, R Henao, CW Woods, C Chiu, Geoffrey S. Ginsburg, Peter X.K. Song, AO. Hero, “Adaptive multi-channel event segmentation and feature extraction for monitoring health outcomes,” IEEE Transactions on Biomedical Engineering, vol. 68, no. 8, pp. 2377-2388, Aug. 2021, doi: 10.1109/TBME.2020.3038652. Available on arxiv:2008.09215 , Emilia Grzesiak, Brinnae Bent, Micah T. McClain, Christopher W. Woods, Ephraim L. Tsalik, Bradly P. Nicholson, Timothy Veldman, Thomas W. Burke, Zoe Gardener, Emma Bergstrom, Ronald B. Turner, Christopher Chiu, P. Murali Doraiswamy, Alfred Hero, Ricardo Henao, Geoffrey S. Ginsburg, Jessilyn Dunn Assessment of the Feasibility of Using Noninvasive Wearable Biometric Monitoring Sensors to Detect Influenza and the Common Cold Before Symptom Onset. JAMA Netw Open. 2021;4(9):e2128534. doi:10.1001/jamanetworkopen.2021.28534 , E Sabeti, S Oh, PX Song, A Hero. “A Pattern Dictionary Method for Anomaly Detection,” Entropy, vol 24, pp. 1095 Aug 2022. doi: 10.3390/e24081095, and Yaya Zhai, P. Murali Doraiswamy, Christopher W. Woods, Ronald B. Turner, Thomas W. Burke, Geoffrey S. Ginsburg, Alfred O. Hero, "Pre-exposure cognitive performance variability is associated with severity of respiratory infection," manuscript under review.
- Discipline:
- Health Sciences and Social Sciences
-
- Creator:
- Minallah, Samar and Steiner, Allison L.
- Description:
- Data format: netcdf4 , Time series duration: 2016-06-01 to 2020-10-31, Temporal resolution: Daily, and Spatial resolution: The model output was regridded to a 0.05 degree rectilinear (lat/lon) grid using the conservative remapping method ("cdo remapcon" tool).
- Keyword:
- Land surface hydrology, Great Lakes, Land surface model, NOAH-MP, WRF-Hydro, and Hydrologic modeling
- Citation to related publication:
- Minallah, S. (2022). A Study on the Atmospheric, Cryospheric, and Hydrologic Processes Governing the Evolution of Regional Hydroclimates (Doctoral dissertation, University of Michigan Ann Arbor). https://dx.doi.org/10.7302/6223
- Discipline:
- Science and Engineering
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for vertebrae of Phenacolemur (University of Michigan Museum of Paleontology catalog number UMMP VP 94723) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Paromomyidae, UMMP, University of Michigan Museum of Paleontology, Eocene, CTEES, and 31cf6e4a-86dd-9452-49f4-c5ce0d946613
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for skull of Stylemys nebrascensis (University of Michigan Museum of Paleontology catalog number UMMP VP 9318) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Testudinidae, UMMP, University of Michigan Museum of Paleontology, Oligocene, CTEES, and c38728f5-6f38-d862-7bcf-9745e69db222
- Discipline:
- Science
-
- Creator:
- Kharbush, Jenan J, Carter, Susan J, and Robinson, Rebecca S
- Description:
- Nitrogen availability is hypothesized to play a central role in cyanoHAB progression, as well as production of the N-rich toxin microcystin. Recent work implicated reduced N substrates like ammonium and dissolved organic N (DON) in promoting greater bloom biomass and longevity. To examine the relative importance of oxidized and reduced N substrates to phytoplankton during different bloom stages, we measured concentrations and natural abundance δ15N isotope values of dissolved N substrates and phytoplankton biomass throughout the entirety of the 2020 cyanoHAB in Western Lake Erie. This is the first data on DON concentrations and isotope values in Western Lake Erie. We measured nitrate concentrations and isotope values to compare with DON and also with particulate organic matter (POM) 15N isotope values. This dataset is described and analyzed in the publication, "Patterns in sources and forms of nitrogen during a freshwater cyanobacterial harmful algal bloom".
- Keyword:
- Dissolved organic nitrogen, cyanobacteria, nitrate, particulate organic matter, δ15N, stable isotopes
- Citation to related publication:
- Kharbush, Jenan J., Robinson, Rebecca S., Carter, Susan J. In revision. Patterns in sources and forms of nitrogen during a freshwater cyanobacterial harmful algal bloom. Limnology and Oceanography.
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for tooth, occlusal part of sectioned tooth of Physeter (University of Michigan Museum of Paleontology catalog number UMMP_R_102) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Sclerochronology, CT, Physeteridae, UMMP, University of Michigan Museum of Paleontology, Ford-Mitchell Collection, Holocene, and CTEES
- Citation to related publication:
- University of Michigan Museum of Paleontology, CTEES. CT Data of UMMP R 102, Physeter tooth (apical part of sectioned tooth) [Data set], University of Michigan - Deep Blue Data. https://doi.org/10.7302/msdh-gc24
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for tooth-apical of Physeter (University of Michigan Museum of Paleontology catalog number UMMP_R_102) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Sclerochronology, CT, Physeteridae, UMMP, University of Michigan Museum of Paleontology, Ford-Mitchell Collection, Holocene, and CTEES
- Discipline:
- Science
-
- Creator:
- Swiger, Brian M, Liemohn, Liemohn W, Ganushkina, Natalia Y, and Dubyagin, Stepan V
- Description:
- The data included are those that were used in the creation of a model described in the manuscript titled "Predictions of Electron Flux in the near-Earth Plasma Sheet from Solar Wind Driving" by Swiger et al., 2022, published in the Space Weather Journal. doi: pending, TBD and The manuscript describes the development and assessment of a model that predicts electron flux (from 83 eV to 93 keV energies) in a region of Earth's magnetosphere called the plasma sheet. The model uses inputs of solar wind parameters including, but not limited, to solar wind speed and the interplanetary magnetic field.
- Keyword:
- magnetosphere plasma, machine learning, neural network, space weather forecasting, electrons in space, Earth's plasma sheet, and solar wind driving of magnetosphere
- Citation to related publication:
- Swiger, B. M., Liemohn, M. W., Ganushkina, N. Y., & Dubyagin, S. V. (2022). Energetic electron flux predictions in the near-Earth plasma sheet from solar wind driving. Space Weather, 20, e2022SW003150. https://doi.org/10.1029/2022SW003150
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for HOLOTYPE jaw frag. of Trilophosaurus buettneri (University of Michigan Museum of Paleontology catalog number UMMP_VP_2338) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Trilophosauridae, UMMP, University of Michigan Museum of Paleontology, L. Triassic, CTEES, and 80ea727c-798c-5382-2ae7-eff7f13b66af
- Citation to related publication:
- Case, E.C. (1928) Indications of a Cotylosaur and of a New Form of Fish from the Triassic Beds of Texas, with Remarks on the Shinarump Conglomerate. Contributions from the Museum of Paleontology, University of Michigan Vol. 3(1):1-14. https://hdl.handle.net/2027.42/48181
- Discipline:
- Science
-
Dynamical Heating in the Martian Thermosphere: Temperatures, Winds and Thermal Balances using M-GITM
- Creator:
- Bougher, S. W. and Pilinski, M. D.
- Description:
- The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking systematic measurements of the densities and deriving temperatures in the upper atmosphere of Mars (between about 140 to 240 km above the surface) since late 2014. Wind measurement campaigns have also been conducted once per month for 5-10 orbits since 2016. These densities, temperatures and winds change with time (e.g. solar cycle, season, local time) and location, and sometimes fluctuate quickly. Global dust storm events are also known to significantly impact these density, temperature and wind fields in the Mars thermosphere. For the current project, in-situ measured winds and corresponding argon density derived temperatures are combined to trace the circulation patterns and investigate their convergence and divergence locations and impacts throughout the Mars thermosphere. M-GITM computed thermal balance terms are subsequently extracted to investigate the processes required to maintain the temperature distribution around the planet. For this work, Mars Year #33 (MY33) Neutral Gas and Ion Mass Spectrometer (NGIMS) measurements have been obtained by the MAVEN team for this purpose (see these representative works: (Bougher et al., 2017; Stone et al., 2018; Benna et al., 2019). These temperature and wind fields are compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars also provides the needed context for understanding temperature distributions and underlying thermal balances throughout the atmosphere. Three dimensional M-GITM simulations for three of the four Mars cardinal seasons (Ls = 0, 90, 270) for MY33 were conducted for detailed comparisons with NGIMS temperature and wind distributions (Pilinski et al. 2022). Corresponding M-GITM datacubes used to extract these temperatures (plus winds) along the trajectory of each orbit path between 140 and 240 km, are provided in this Deep Blue Data archive. A single README file is included that details the contents of each datacube file. In addition, this general README file summarizes the inputs and outputs of each M-GITM simulation interval used for this study. Finally, a basic version of the M-GITM code can be found on Github at https:/github.com/dpawlows/MGITM.
- Keyword:
- MAVEN, Mars thermosphere, global dynamics, and heat balances owing to winds
- Citation to related publication:
- Pilinski, M. D., K. J. Roeten, S. W. Bougher and M. Benna, Dynamical Heating in the Martian Thermosphere, Journal Geophysical Res., XXX, (forthcoming - 2022). doi: .....
- Discipline:
- Science
-
- Creator:
- Zhou, Peng and Mi, Zetian
- Description:
- Production of hydrogen fuel from sunlight and water offers one of the most promising pathways for carbon neutrality. Some solar hydrogen production approaches, e.g., photoelectrochemical water splitting, often requires corrosive electrolyte, limiting their performance stability and environmental sustainability. Alternatively, clean hydrogen can be produced directly from tap water, or seawater by wireless photocatalytic water splitting. The solar-to-hydrogen (STH) efficiency, however, is still lower than 3%. Herein, we have developed a unique strategy to overcome the efficiency bottleneck. A high STH efficiency of 9.2% was achieved by utilizing pure water, concentrated solar light, and visible-light-responsive InGaN photocatalyst. The success of this strategy was explained by the synergistic effects of promoting forward hydrogen-oxygen evolution and inhibiting the reverse hydrogen-oxygen recombination by operating at an optimal reaction temperature (~70 °C). Such an optimal temperature can be readily achieved by harvesting the previously wasted infrared light of the solar spectrum without other energy consumption. This temperature-dependent strategy also leads to the STH efficiencies of ~7% from the widely available tap water and seawater. A large-scale photocatalytic water splitting system with a natural solar light capacity of 257 W on a 4 cm × 4 cm photocatalyst wafer achieves a STH of 6.2% at ~70 oC. Our study offers a practical approach to produce hydrogen fuel efficiently from natural solar and water, overcoming some of the major barriers for green hydrogen economy.
- Keyword:
- photocatalysis, water splitting, and solar hydrogen
- Discipline:
- Science
-
- Creator:
- Jivani, Aniket, Sachdeva, Nishtha, Huang, Zhenguang, Chen, Yang, van der Holst, Bart, Manchester, Ward, Iong, Daniel, Chen, Hongfan, Zou, Shasha, Huan, Xun, and Toth, Gabor
- Description:
- In this work, we perform Global Sensitivity Analysis (GSA) for the background solar wind in order to quantify contributions from uncertainty of different model parameters to the variability of in-situ solar wind speed and density at 1au, both of which have a major impact on CME propagation and strength. Scripts written in the Julia language are used to build the PCE and calculate the sensitivity results. Data is available in csv, NetCDF and JLD files. A `Project.toml` file is included to activate and install all required dependencies (See README for details).
- Keyword:
- Uncertainty Quantification, Space Weather, and Global Sensitivity Analysis
- Discipline:
- Engineering
-
- Creator:
- Bougher, S. W. and Parkinson, C. D.
- Description:
- Understanding the state and composition of an exoplanetary atmosphere depends upon several parameters such as heating, cooling, mixing and reactions between constituent chemical species. Only a few types of atmospheric species can be detected remotely spectroscopically and only if their abundance is large enough to be detectable. In this initial study, we model the atmosphere of a Venus-like planet orbiting the M-type star GJ 436 to determine the global neutral temperature structure, winds, and energy balance as the radial distance of the planet from the star decreases.
- Keyword:
- Venus-like exoplanet, upper atmospheres , and heat balances
- Citation to related publication:
- C. D. Parkinson, S. W. Bougher, F. P. Mills, R. Hu, G. Gronoff, J. Li, A. Brecht, D. Adams, and Y. L. Yung. Venus as an Exoplanet: I. An Initial Exploration of the 3-D Energy Balance for a CO2 Exoplanetary Atmosphere Around an M-Dwarf Star, J. Geophysical Research, X, (2022). doi:....
- Discipline:
- Science
-
- Creator:
- Limon, Garrett C.
- Description:
- The data represents weekly output from three 60-year CAM6 model runs. The output includes state (.h0. files) and tendency (.h1. files) fields for three difference model configurations of increasing complexity. State fields include temperature, surface pressure, specific humidity, among others; while tendencies include temperature tendencies, specific humidity tendencies, as well as precipitation rates. Using the state variables at a given time step, machine learning techniques can be trained to predict the following tendency field, which can then be applied to the state variables to provide the state at the next physics time step of the model.
- Keyword:
- Machine Learning, Climate Modeling, and Physics Emulation
- Citation to related publication:
- Limon, G. C., Jablonowski, C. (2022) Probing the Skill of Random Forest Emulators for Physical Parameterizations via a Hierarchy of Simple CAM6 Configurations [Preprint]. ESSOAr. https://10.1002/essoar.10512353.1
- Discipline:
- Engineering and Science
-
- Creator:
- University of Michigan Museum of Paleontology, Nondestructive Evaluation Laboratory, Ford Motor Company, and Jones, Martin
- Description:
- Reconstructed CT slices for a right tusk of Loxodonta africana (University of Michigan Museum of Paleontology catalog number UMMP_VP_118186) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_000.tif) is the XYZ origin. Metadata as produced by the Aracor system are included in *.IM$LA text files in IM$LA.zip.
- Keyword:
- Paleontology, CT, Elephantidae, UMMP, University of Michigan Museum of Paleontology, and a4f83cc6-09f2-0032-8a09-60ea798f787c
- Citation to related publication:
- Cherney, M., et al. (in prep)
- Discipline:
- Science
-
- Creator:
- Huber, Daniel E
- Description:
- The files here provide monthly averaged soil NOx emissions (units of ng N m^-2 s^-1) for the contiguous United States on a 0.25 degree x 0.25 degree grid for the years 2011-2020 .
- Keyword:
- soil NOx, soil emissions, biogenic emissions, and agricultural emissions
- Discipline:
- Science
-
- Creator:
- Sun, Hu, Ren, Jiaen, Chen, Yang, Zou, Shasha, Chang, Yurui, Wang, Zihan, and Coster, Anthea
- Description:
- Our research focuses on providing a fully-imputed map of the worldwide total electron content with high resolution and spatial-temporal smoothness. We fill in the missing values of the original Madrigal TEC maps via estimating the latent feature of each latitude and local time along the 2-D grid and give initial guess of the missing regions based on pre-computed spherical harmonics map. The resulting TEC map has high imputation accuracy and the ease of reproducing. All data are in HDF5 format and are easy to read using the h5py package in Python. The TEC map is grouped in folders based on years and each file contains a single-day data of 5-min cadence. Each individual TEC map is of size 181*361. and WARNING: 2023-12-01 the data file for 2019-Jan-03 has badly fitted values. Please avoid using it. All other days' files are ready to use.
- Keyword:
- Total Electron Content, Matrix Completion, VISTA, Spherical Harmonics, and Spatial-Temporal Smoothing
- Citation to related publication:
- Sun, H., Hua, Z., Ren, J., Zou, S., Sun, Y., & Chen, Y. (2022). Matrix completion methods for the total electron content video reconstruction. The Annals of Applied Statistics, 16(3), 1333-1358., Sun, H., Chen, Y., Zou, S., Ren, J., Chang, Y., Wang, Z., & Coster, A. (2023). Complete Global Total Electron Content Map Dataset based on a Video Imputation Algorithm VISTA. Scientific Data, in press., and Zou, S., Ren, J., Wang, Z., Sun, H., & Chen, Y. (2021). Impact of storm-enhanced density (SED) on ion upflow fluxes during geomagnetic storm. Frontiers in Astronomy and Space Sciences, 8, 746429.
- Discipline:
- Science and Engineering
-
- Creator:
- Goodrich, Jaclyn M., Tang, Lu, Rodríguez-Carmona, Yanelli, Meijer, J L., Perng, Wei, Watkins, Deborah J., Meeker, John D. , Mercado-García, Adriana, Cantoral, Alejandra, Song, Peter X. , Téllez-Rojo, Martha M. , and Peterson, Karen E.
- Description:
- Phthalates are chemicals found in many products that humans are exposed to. Prenatal exposure to phthalates has been associated with adverse outcomes that are detected in childhood, adolescence, and even adulthood. In this study, we sought to identify subtle biological changes in the metabolome of children that were exposed to phthalates during gestation. We hypothesized that prenatal phthalate exposures would alter metabolic pathways related to adiposity and cardiometabolic health. The article is under review (citation to be added when paper is published). The data included here encompass all exposure, demographic, and untargeted metabolomics data needed for the analysis described in the manuscript.
- Keyword:
- Phthalates , Prenatal, and Metabolomics
- Citation to related publication:
- Goodrich J.M., Tang L.,Rodríguez-Carmona Y., Meijer J.L, Perng W., Watkins D.J., Meeker J.D., Mercado-García A., Cantoral A., Song P.X., Téllez-Rojo M.M., Peterson K.E. Trimester-specific phthalate exposures in pregnancy are associated with circulating metabolites in children. PLoS One. (Under revision – forthcoming.)
- Discipline:
- Other and Health Sciences
-
- Creator:
- University of Michigan Museum of Paleontology and CTEES
- Description:
- Reconstructed CT slices for vertebrae of Hyopsodus (University of Michigan Museum of Paleontology catalog number UMMP_VP_102495) as a series of TIFF images. Raw projections are not included in this dataset. The reconstructed slice data from the scan are offered here as a series of unsigned 16-bit integer TIFF images. The upper left corner of the first image (*_0000.tif) is the XYZ origin.
- Keyword:
- Paleontology, Fossil, CT, Hyopsodontidae, UMMP, University of Michigan Museum of Paleontology, Eocene, CTEES, and 01ee73fb-6b53-fe52-3a01-2857be88a65e
- Discipline:
- Science