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- Creator:
- Arthurs, Christopher J., Khlebnikov, Rostislav, Melville, Alexander, Marčan, Marija, Gomez, Alberto, Dillon-Murphy, Desmond, Cuomo, Federica, Vieira, Miguel, Schollenberger, Jonas, Lynch, Sabrina, Tossas-Betancourt, Christopher, Iyer, Kritika, Hopper, Sara, Livingston, Elizabeth, Youssefi, Pouya, Noorani, Alia, Ben Ahmed, Sabrina, Nauta, Foeke J.N., van Bakel, Theodorus M.J., Ahmed, Yunus, van Bakel, Petrus A.J., Mynard, Jonathan, Di Achille, Paolo, Gharahi, Hamid, Lau, Kevin D., Filonova, Vasilina, Aguirre, Miquel, Nama, Nitesh, Xiao, Nan, Baek, Seungik, Garikipati, Krishna, Sahni, Onkar, Nordsletten, David, and Figueroa, Carlos A.
- Description:
- This repository contains the source code for the CRIMSON GUI, as required in the PLOS Computational Biology publication: CRIMSON: An Open-Source Software Framework for Cardiovascular Integrated Modelling and Simulation by the same authors., This is a snapshot of the software; build dependencies can be found at https://doi.org/10.7302/ssj9-n788. Please visit https://github.com/carthurs/CRIMSONGUI/releases/tag/PLOS_Comp_Bio & www.crimson.software for more general information and the most up to date version of the software., and Software can be compiled in Windows.
- Keyword:
- Blood Flow Simulation, Patient-specific, Open-source Software, Image-based simulation, Cardiovascular Medical Image, Segmentation, and Finite Element Simulation
- Citation to related publication:
- CRIMSON: An Open-Source Software Framework for Cardiovascular Integrated Modelling and Simulation C.J. Arthurs, R. Khlebnikov, A. Melville, M. Marčan, A. Gomez, D. Dillon-Murphy, F. Cuomo, M.S. Vieira, J. Schollenberger, S.R. Lynch, C. Tossas-Betancourt, K. Iyer, S. Hopper, E. Livingston, P. Youssefi, A. Noorani, S. Ben Ahmed, F.J.H. Nauta, T.M.J. van Bakel, Y. Ahmed, P.A.J. van Bakel, J. Mynard, P. Di Achille, H. Gharahi, K. D. Lau, V. Filonova, M. Aguirre, N. Nama, N. Xiao, S. Baek, K. Garikipati, O. Sahni, D. Nordsletten, C.A. Figueroa bioRxiv 2020.10.14.339960; doi: https://doi.org/10.1101/2020.10.14.339960 and Computational Vascular Biomechanics Lab @ the University of Michigan and other collaborators, The Qt Company, NSIS Team and contributors, PostgreSQL Global Development Group, Oracle Corporation, Kitware. CRIMSON open source project - Build Dependencies [Data set], (2021). University of Michigan - Deep Blue. https://doi.org/10.7302/ssj9-n788
- Discipline:
- Health Sciences and Engineering
-
- Creator:
- Zhang, Yan, Gao, Chuanyu, Zhang, Shaoqing, Yang, Ping, Meyers, Philip A, and Wang, Guoping
- Description:
- The study focuses on reconstructing the histories of peat deposition using n-alkane biomarkers in peat cores and associated modern plant communities from four sites around a shallow maar lake in the Changbai Mountains of northeastern China. Peat development patterns in the four sites are not concordant although the sites experienced the same paleoclimate histories. Evidently, lava flows and tephra deposits produced an uneven topography of the volcanogenic lake basin that controls the water depths at the four lake edge locations, thereby leading to differences in peat-forming plant communities and peat deposition among the four sites.
- Keyword:
- peat deposition, n-alkanes, volcanic eruptions, and Changbai Lake
- Citation to related publication:
- Zhang, Y., Gao, C., Zhang, S., Yang, P., Meyers, P. A., & Wang, G. (2020). N-Alkane-based reconstructions of peat accumulations and depositional conditions at four locations around a shallow maar lake in the Changbai Mountains, northeastern China (world) [Preprint]. Earth and Space Science Open Archive; Earth and Space Science Open Archive. https://doi.org/10.1002/essoar.10505381.1
- Discipline:
- Science
-
- Creator:
- DeLong, Michael R, Tandon, Vickram J, Farajzadeh, Matthew, Berlin, Nicholas L, MacEachern, Mark P, Rudkin, George H, Da Lio, Andrew L, and Cederna, Paul S
- Description:
- The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Systematic Review, Acellular Dermal Matrix, Breast Reconstructions, and Tissue Expanders
- Citation to related publication:
- DeLong MR, Tandon VJ, Farajzadeh M, Berlin NL, MacEachern MP, Rudkin GH, Da Lio AL, Cederna PS. (2019). Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions. Plastic and Reconstructive Surgery. and https://doi.org/10.1097/PRS.0000000000006212
- Discipline:
- Health Sciences
-
- Creator:
- Nunley, Hayden, Nagashima, Mikiko, Martin, Kamirah, Lorenzo Gonzalez, Alcides, Suzuki, Sachihiro C., Norton, Declan A., Wong, Rachel O. L., Raymond, Pamela A., and Lubensky, David K.
- Description:
- This dataset contains images of UV cone nuclei (labelled by transgenic expression of a photoconvertible fluorescent protein) near the retinal margin in live fish. The most important images in the dataset are the following: 1. Images (at 4X magnification) of UV cones immediately after photoconversion of a patch near the retinal margin 2. Images (at 4X magnification) of UV cones 2-4 days after photoconversion of a patch near the retinal margin Also, included is code for calculating triangulations (which connect UV cone nuclei which are nearest neighbors). This code allows us to check for motion of UV cones relative to each other between the time of photoconversion and subsequent imaging.
- Keyword:
- zebrafish cone mosaic, topological defects, tissue patterning, grain boundaries, photoconversion, and defect motion
- Citation to related publication:
- Nunley, H., Nagashima, M., Martin, K., Gonzalez, A. L., Suzuki, S. C., Norton, D. A., Wong, R. O. L., Raymond, P. A., & Lubensky, D. K. (2020). Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLOS Computational Biology, 16(12), e1008437. https://doi.org/10.1371/journal.pcbi.1008437 and Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C. Suzuki, Declan Norton, Rachel O. L. Wong, Pamela A. Raymond, David K. Lubensky. Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation. bioRxiv 806679; doi: https://doi.org/10.1101/806679
- Discipline:
- Science
-
- Creator:
- Surajit Chatterjee, Adrien Chauvier, Shiba S. Dandpat, Irina Artsimovitch, and Nils G. Walter
- Description:
- These data were generated to study the dynamics of RNAP-ribosome interactions on a nascent mRNA with a preQ1-sensing translational riboswitch in its 5’ untranslated region (UTR). Using single-molecule fluorescence co-localization, we monitored direct transient binding of 30S ribosomal subunit to the individual nascent mRNA molecules in surface-immobilized paused elongation complexes (PECs). Also, using a novel protein-induced fluorescence enhancement assay we monitored the real-time transcription rate of RNA polymerase (RNAP) under different experimental conditions. The DNA template including the preQ1 riboswitch from B. anthracis under the control of the T7A1 promoter was cloned into pUC19 plasmid. Transcription templates for in vitro transcription were generated by PCR.
- Citation to related publication:
- Chatterjee, S., Chauvier, A., Dandpat, S.S., Artsimovitch, I., & Walter, N.G. (2021). A translational riboswitch coordinates nascent transcription-translation coupling. Proc. Natl. Acad. Sci., 118 (16), e2023426118; DOI: 10.1073/pnas.2023426118
- Discipline:
- Science
-
- Creator:
- Holmes, Iris A, Monagan Jr., Ivan V, Westphal, Michael F, and Davis Rabosky, Alison R
- Description:
- We generated these data from desert night lizards, Xantusia vigilis, from populations in central California. We performed phylogeographic analyses based on these data.
- Keyword:
- ddRADseq, phylogeography, Xantusia vigilis, lizard, and genome-scale sequencing
- Discipline:
- Science
-
- Creator:
- Yang, Emily G, Kort, Eric A, Wu, Dien, Lin, John C, Oda, Tomohiro, Ye, Xinxin, and Lauvaux, Thomas
- Description:
- This data set supports a study that seeks to evaluate global fossil fuel CO2 emissions inventory representations of CO2 emissions of five cities in the Middle East, and assess the ability of satellite observations to inform this evaluation. Improved observational understanding of urban CO2 emissions, a large and dynamic global source of fossil CO2, can provide essential insights for both carbon cycle science and mitigation decision making. In this study we compare three distinct global CO2 emissions inventory representations of urban CO2 emissions for five Middle Eastern cities (Riyadh, Mecca, Tabuk, Jeddah, and Baghdad) and use independent satellite observations from the Orbiting Carbon Observatory-2 (OCO-2) satellite to evaluate the inventory representations of afternoon emissions. We use the column version of the Stochastic Time-Inverted Lagrangian Transport (X-STILT) model to account for atmospheric transport and link emissions to observations. We compare XCO2 simulations with observations to determine optimum inventory scaling factors. Applying these factors, we find that the average summed emissions for all five cities are 100 MtC/y (50-151, 90% CI), which is 2.0 (1.0, 3.0) times the average prior inventory magnitudes. The total adjustment of the emissions of these cities comes out to ~7% (0%, 14%) of total Middle Eastern emissions (~700 MtC/y). We find our results to be insensitive to the prior spatial distributions in inventories of the cities’ emissions, facilitating robust quantitative assessments of urban emission magnitudes without accurate high-resolution gridded inventories. and There are three files included in this data set, and all data are in tab-delimited form. The first file, xco2_lat.zip, contains 26 separate text files, each named by the city and date of the corresponding OCO-2 overpass. Each of these 26 files includes overpass-specific data, with modeled and observed XCO2 values binned by 0.1 degree of latitude. The file overpass_scaling_factors.txt provides the scaling factors for each overpass used in this study. The file city_estimates.txt provides the scaled emissions estimates for each city (or sum of cities) as well as the lower and upper bounds of the 90% confidence intervals, for each inventory.
- Keyword:
- greenhouse gases, carbon dioxide, urban, cities, satellite, remote sensing, Lagrangian modeling, emissions inventories, carbon cycle, and climate
- Citation to related publication:
- Yang, E. G., Kort, E. A., Wu, D., Lin, J. C., Oda, T., Ye, X., & Lauvaux, T. (2020). Using space‐based observations and Lagrangian modeling to evaluate urban carbon dioxide emissions in the Middle East. Journal of Geophysical Research: Atmospheres, 125, e2019JD031922. https://doi.org/10.1029/2019JD031922
- Discipline:
- Science
-
- Creator:
- Benjamin Leffel
- Description:
- Data were gathered to test three hypotheses on the impact economic growth has on environmental conditions in urban areas. The three hypotheses are: 1. Income will be associated with reductions in PM2.5, PM10, NO2 and SO2. 2. Public Administration GVA will be associated with reductions in PM2.5, PM10, NO2 and SO2. 3. Urban density will be associated with reductions in PM2.5, PM10, NO2 and SO2. More information about the research and the data can be found in: Benjamin Leffel, Nikki Tavasoli, Brantley Liddle, Kent Henderson & Sabrina Kiernan (2021) Metropolitan air pollution abatement and industrial growth: Global urban panel analysis of PM10, PM2.5, NO2 and SO2, Environmental Sociology, DOI: 10.1080/23251042.2021.1975349.
- Keyword:
- global cities, environment, urban, air pollution, income, Urban Sustainability Research Group, and student-friendly
- Citation to related publication:
- Benjamin Leffel, Nikki Tavasoli, Brantley Liddle, Kent Henderson & Sabrina Kiernan (2021) Metropolitan air pollution abatement and industrial growth: Global urban panel analysis of PM10, PM2.5, NO2 and SO2, Environmental Sociology, DOI: 10.1080/23251042.2021.1975349
- Discipline:
- Social Sciences
-
- Creator:
- Lim, Hongki and Dewaraja, Yuni K.
- Description:
- Interest in quantitative imaging of Y-90 is growing because transarterial radioembolization (RE) with Y-90 loaded microspheres is a promising and minimally invasive treatment that is FDA approved for unresectable primary and metastatic liver tumors. These cancers are a leading cause of cancer mortality and morbidity. Radioembolization is a therapy that irradiates liver tumors with radioactive microspheres administered through a microcatheter placed in the hepatic arterial vasculature. Radioembolization is based on the principle that healthy liver and tumor are mainly vascularized by the portal vein and the hepatic artery respectively. As a result, radioactive microspheres are preferentially located in the lesions after they are administered via the hepatic artery.
- Keyword:
- Y-90, PET, SPECT, CT, Segmentation, Organ, Tumor, Label
- Citation to related publication:
- Van, B. J., Dewaraja, Y. K., Sangogo, M. L., & Mikell, J. K. (2021). Y-90 SIRT: Evaluation of TCP variation across dosimetric models. EJNMMI Physics, 8(1), 45. https://doi.org/10.1186/s40658-021-00391-6
- Discipline:
- Health Sciences
-
- Creator:
- Roeten, K. J. and Bougher, S. W.
- Description:
- In order to better understand the large-scale impacts of smaller-scale gravity waves in the upper atmosphere of Mars, a modern whole atmosphere, nonlinear, non-orographic, spectral gravity wave parameterization scheme (Yigit et al., 2008) has been added to the ground-to-exosphere 3-D general circulation model, M-GITM (Bougher et al., 2015), which previously did not account for the effects of this physical process. New atmospheric simulations have been run for cases which did and did not utilize this gravity wave parameterization as well as for cases designed to test the sensitivity of certain adjustable parameters within the scheme. After including the gravity wave parameterization scheme into M-GITM, large impacts are found on the simulated mean thermospheric horizontal velocities and temperature structure, especially within the altitude range of 90-170 km (Roeten et al., 2022). The most notable of these impacts include a reduction in speed of the thermospheric easterlies in the summer hemisphere as well as overall cooling, on average, at altitudes above 120 km., Simulations were run for two different seasons at Mars, a solstice (Ls=270) and an equinox (Ls=180). The output from these simulations have been averaged over all local times over a 15-day time period, starting on the day of the solstice or equinox. The output has also been zonally averaged over all longitudes. Files containing these zonally and temporally averaged files are named starting with “MGITM_ZonalAvg”. Both solstice and equinox cases have been simulated once without including the gravity wave parameterization (“nogw”) and once with the gravity wave parameterization included (“withgw”). Additional simulations of the Ls=270 solstice have been done individually adjusting the horizontal wavelength and maximum source flux parameters within the gravity wave scheme. , and Other M-GITM simulations have also been provided in a different format. These M-GITM simulations are ‘flythroughs’ of model output, extracted along the same trajectory path of the MAVEN spacecraft, which allows for better data-model comparisons with in-situ MAVEN/NGIMS (Neutral Gas and Ion Mass Spectrometer) observations. These simulations have been done for three different NGIMS observational campaigns, both for cases that include and do not include the effects of gravity waves. Output from these simulations has NOT been averaged; instead, output from each simulated MAVEN orbit is included within the file. These files are named starting with “MGITM_TempExtraction” or “MGITM_WindExtraction” based on whether the MGITM flythrough was designed to be compared to MAVEN/NGIMS temperature or wind profiles, respectively.
- Keyword:
- Mars, M-GITM, MAVEN, and Mars upper atmosphere
- Citation to related publication:
- Roeten, K. J., Bougher, S. W., Yigit, E., Medvedev, A. S., Benna, M., Elrod, M. K. (2022). Impacts of gravity waves in the Martian thermosphere: The Mars Global Ionosphere- Thermosphere Model coupled with a whole atmosphere gravity wave scheme. Journal of Geophysical Research: Planets. In preparation.
- Discipline:
- Science
-
Video data of predation and parasitism by arthropods on small vertebrates in lowland Peruvian Amazon
- Creator:
- Grundler, Michael C, Grundler, Maggie G, and Herrera, V.
- Description:
- Nighttime and diurnal surveys in the lowland Peruvian Amazon of Los Amigos Biological Station were conducted in order to describe herpetological diversity at this site. As a result of these surveys, the predation event between a Pamphobeteus sp. and Marmosops sp. and the myiasis of Ranitomeye uakarii were observed. The video footage was recorded in order to document these interesting interactions between arthropod predators and parasites and vertebrate prey and hosts, and are included for publication in the short communication "Ecological interactions between arthropods and small vertebrates in a lowland Amazon rainforest" in the journal Amphibian and Reptile Conservation.
- Keyword:
- Amazonia, predator-prey, spiders, opposums, frogs, and myiasis
- Citation to related publication:
- von May R, Biggi E, Cárdenas H, Diaz MI, Alarcón C, Herrera V, Santa-Cruz R, Tomasinelli F, Westeen E, Sánchez-Paredes CM, Larson JG, Title PO, Grundler MR, Grundler MC, Davis Rabosky AR, Rabosky DL (2019) Ecological interactions between arthropods and small vertebrates in a lowland Amazon rainforest. Amphibian and Reptile Conservation 13(1): 65–77. http://amphibian-reptile-conservation.org/pdfs/Volume/Vol_13_no_1/ARC_13_1_[General_Section]_65-77_e169_high_res.pdf
- Discipline:
- Science
-
- Creator:
- Xiantong Wang
- Description:
- We perform a geomagnetic event simulation using a newly developed magnetohydrodynamic with adaptively embedded particle-in-cell (MHD-AEPIC) model. We have developed effective criteria to identify reconnection sites in the magnetotail and cover them with the PIC model. The MHD-AEPIC simulation results are compared with Hall MHD and ideal MHD simulations to study the impacts of kinetic reconnection at multiple physical scales. At the global scale, the three models produce very similar SYM-H and SuperMag Electrojet (SME) indexes, which indicates that the global magnetic field configurations from the three models are very close to each other. At the mesoscale we compare the simulations with in situ Geotail observations in the tail. All three models produce reasonable agreement with the Geotail observations. The MHD-AEPIC and Hall MHD models produce tailward and earthward propagating fluxropes, while the ideal MHD simulation does not generate flux ropes in the near-earth current sheet. At the kinetic scales, the MHD-AEPIC simulation can produce a crescent shape distribution of the electron velocity space at the electron diffusion region which agrees very well with MMS observations near a tail reconnection site. These electron scale kinetic features are not available in either the Hall MHD or ideal MHD models. Overall, the MHD-AEPIC model compares well with observations at all scales, it works robustly, and the computational cost is acceptable due to the adaptive adjustment of the PIC domain.
- Keyword:
- MHD, PIC, and Magnetosphere
- Discipline:
- Science
-
- Creator:
- Hatch, Nan E.
- Description:
- Craniosynostosis is the premature fusion of cranial bones. The goal of this study was to determine if delivery of recombinant tissue nonspecific alkaline phosphatase (TNAP) could prevent or diminish the severity of craniosynostosis in a C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis or a BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis. Mice were injected with a lentivirus encoding a mineral targeted form of TNAP immediately after birth. Cranial bone fusion as well as cranial bone volume, mineral content and density were assessed by micro computed tomography. Craniofacial shape was measured with calipers., Alkaline phosphatase, alanine amino transferase (ALT) and aspartate amino transferase (AST) activity levels were measured in serum. Neonatal delivery of TNAP diminished craniosynostosis severity from 94% suture obliteration in vehicle treated mice to 67% suture obliteration in treated mice, p<0.02) and the incidence of malocclusion from 82.4% to 34.7% (p<0.03), with no effect on cranial bone in C57BL/6 FGFR2C342Y/+ mice. In contrast, treatment with TNAP improved cranial bone volume (p< 0.01), density (p< 0.01) and mineral content (p< 0.01) but had no effect on craniosynostosis or malocclusion in BALB/c FGFR2C342Y/+ mice. , These results indicate that post-natal recombinant TNAP enzyme therapy diminishes craniosynostosis severity in the C57BL/6 FGFR2C342Y/+ neonatal onset mouse model of Crouzon syndrome, and that effects of exogenous TNAP are genetic background dependent., and Included in this collection is one set of images representing the C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis, and one for the BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis
- Keyword:
- craniofacial, bone, craniosynostosis, FGFR2, TNAP, mouse model, and development
- Discipline:
- Health Sciences
2Works -
- Creator:
- Gharzai, Laila A, Green, Michael D, Griffith, Kent A, and Jolly, Shruti
- Description:
- Three sensitivity analyses were performed. First, a second matching step was performed in which two controls were selected for each case, where possible using a nearest neighbor and caliper metric. Controls needed to have propensity scores within 0.1 of the case to be selected. Thirty-eight of the 39 cases had at least one control using this method and for 36 cases two controls could be selected. The average difference between case and control propensity adjuvant RT was 0.008 (range 0.00003-0.095). A second sensitivity analysis was performed to guard against immortal time bias. In order to mitigate the possibility of this effect, cases known not to have undergone adjuvant RT have been screened for suitable follow-up without a recurrence (local or regional recurrence, metastatic failure, and/or death) to ensure that if adjuvant RT had been prescribed as part of the multi-modality treatment regimen, that it would have been initiated. Three months was selected as the mandatory follow-up time. One to one matching was carried out and all 39 cases were matched to a control. A third sensitivity analysis was performed to account for stage migration seen in control patients that presented to the University of Michigan with more advanced disease. Patients that underwent adjuvant radiation were matched one to one with control group patients who did not receive adjuvant radiation, and who had the same stage at diagnosis as compared to stage at University of Michigan presentation.
- Keyword:
- adenocortical carcinoma and English
- Discipline:
- Health Sciences
-
- Creator:
- Moser, Carol, Schoenebeck, Sarita Y., and Resnick, Paul
- Description:
- This work investigates what features e-commerce sites use to encourage impulse buying and what tools consumers desire to curb their online spending. We present supplementary material for two studies: (1) a systematic content analysis of 200 top e-commerce websites in the U.S. and (2) a survey of online impulse buyers (N=151). Files include: (1) Study 1 Code book for content analysis of websites (2) Study 1 CSV data file resulting from the content analysis (3) Study 1 PDFs (N=200) of e-commerce websites analyzed (4) Study 2 Online survey questionnaire (5) Study 2 Survey code book for free response questions
- Citation to related publication:
- Moser, C., Schoenebeck, S.Y., Resnick, P., 2019. Impulse Buying: Design Practices and Consumer Needs, in: Proceedings of the 2019 CHI Conference on Human Factors in Computing Systems, CHI ’19. Association for Computing Machinery, Glasgow, Scotland, UK, pp. 1–15. https://doi.org/10.1145/3290605.3300472
- Discipline:
- Social Sciences
-
- Creator:
- Thomaz, Andréa T. (UMICH), Carvalho, Tiago P. (UFRGS), Malabarba, Luiz R. (UFRGS), and Knowles, L. Lacey (UMICH)
- Description:
- Estimated phylogenetic relationships based on more than 18,000 loci in 93 individuals (full data) or 21 individuals (subset data) representing 19 described species and two putative undescribed species. Nine files are part of this dataset, including all input files to infer the phylogenetic reconstructions and the outputs obtained, in addition to a pruned tree used to infer the ancestral state reconstructions.
- Keyword:
- dusky millions poeciliids, sexual selection, South America, and ddRADseq
- Citation to related publication:
- Andréa T. Thomaz, Tiago P. Carvalho, Luiz R. Malabarba, L. Lacey Knowles, Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): insights about diversification among sympatric species pools, Molecular Phylogenetics and Evolution, 2018, ISSN 1055-7903, https://doi.org/10.1016/j.ympev.2018.12.008
- Discipline:
- Science
-
- Creator:
- Mitchell, Michael
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890, and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Danko, Melissa
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway, sitesucker , website, and file directory
- Discipline:
- Humanities
-
- Creator:
- Danko, Melissa
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , capstone , sitesucker , website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Schuler, Kaitlin
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website , and file directory
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
- Discipline:
- Humanities
-
- Creator:
- Cockrum, Kayla
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , capstone , sitesucker , website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Brown, Kathryn
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website, and file directory
- Discipline:
- Humanities
-
- Creator:
- Brown, Kathryn
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , capstone , sitesucker , website , and file directory
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
- Discipline:
- Humanities
-
- Creator:
- Adams, Julia
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Garno, Gregory
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker, website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Lisner, Emily
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , gateway , sitesucker , website , and file directory
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890
- Discipline:
- Humanities
-
- Creator:
- Avesian, Erica
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication: https://doi.org/10.3998/mpub.10079890), and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a ( https://doi.org/10.3998/mpub.10079890.cmp.1) to the publication.
- Keyword:
- eportfolio , capstone, sitesucker, website , and file directory
- Discipline:
- Humanities
-
- Creator:
- Liang, Jun and Wang, Zihan
- Description:
- The aim of the research to study the temporal evolution of the Sub-Auroral Polarizations Streams (SAPS) with multiple instruments. Aurora images are important to identify the electrodynamics in the high latitude ionosphere. Data used in this research were collected and provided by Dr. Jun Liang at University of Calgary, and analyzed by Zihan Wang for the article accompanying this deposit. The data was collected from all sky imagers (ASI) located in Saskatoon, Canada. and saskrainbow01.sav contains the rgb channels from ASI. It can be opened using IDL. saskasiskymap.gm5 contains the sky map of the ASI. It shows the geographic location of the figure pixels. aurora_diff.pro is the procedure to recover the data from saskrainbow01.sav and make plots. draw_colorbar.pro is the procedure to add a colorbar to the plot. mlon_smp_towang.pro and rebinsmpkeo_towang.pro can together make keogram plots. Run mlon_smp_towang.pro first and then rebinsmpkeo_towang.pro.
- Keyword:
- All Sky Imager
- Citation to related publication:
- Wang, Z., Zou, S., Shepherd, S. G., Liang, J., Gjerloev, J. W., Ruohoniemi, J. M., et al. ( 2019). Multi‐instrument observations of mesoscale enhancement of subauroral polarization stream associated with an injection.Journal of Geophysical Research: Space Physics, 124, 1770– 1784. https://doi.org/10.1029/2019JA026535
- Discipline:
- Science
-
- Creator:
- Singer, Kanakadurga
- Description:
- Supplementary Figure 1. Tissue weights in response to HFD feeding and CL treatment. (A) GWAT weight as % of body weight (B) IWAT weight as % of body weight (C) BAT weight as % of body weight (D) Liver weight as % of body weight. N=7-12 /group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001; error bars are SEM. Comparisons of M ND PBS vs F ND PBS are shown as #p<0.05, ##p<0.01, ###p<0.005 and M HFD PBS vs F HFD PBS are shown as &p<0.05, &&p<0.01, &&&p<0.005, &&&&p<0.0001., Supplementary Figure 2. Free glycerol estimation in lean and obese male and female WAT and BAT depot explants with ADRB3 stimulated lipolysis. Free glycerol estimation in lean and obese (A) GWAT (B) IWAT (C) BAT explant tissues. Free glycerol released calculated as fold change over basal conditions in lean and obese (D) GWAT (E) IWAT (F) BAT explant tissues. N=8 /group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001; error bars are SEM. Comparisons of M ND PBS vs F ND PBS are shown as #p<0.05, ##p<0.01, ###p<0.005 and M HFD PBS vs F HFD PBS are shown as &p<0.05, &&p<0.01, &&&p<0.005, &&&&p<0.0001., Supplementary Figure 3. Gene expression (A) Akt1 and (B) Glut4 gene expression in obese male and female GWAT with and without ADRB3 stimulation. A.U., arbitrary units, N=5-8; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001., Supplementary Figure 4. Flow cytometry assessment of ATMs in lean and obese IWAT SVF. Quantitation of (A) IWAT percent ATMs (B) IWAT CD11c+ ATMs (C) IWAT CD11c-ATMs (D) IWAT dendritic cells (DC) numbers, N=7-12/group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001. , Supplementary Figure 5. Lipidomic assessment of lipid mediators in obese male and female GWAT. (A) Relative hydroxy fatty acids (FAHFA) (B) Phosphatidylserine (PS) (C) Phosphatidylcholine (PC) (D) Lyso-PC (E) Phosphatidylethanolamine (PE) (F) Phosphatidylglycerol (PG) (G) Phosphatidylinositol (PI) content in obese male and female GWAT with and without CL treatment. N=6/group; *p<0.05, **p<0.01, ***p<0.005, ****p<0.0001., and Curation note: Title of deposit changed from "Supplementary Materials Lipolysis Paper" Dec. 20, 2018 to more closely reflect association with the paper these materials support.
- Discipline:
- Science
-
- Creator:
- Ramasubramani, Vyas
- Description:
- The goal of the work is to elucidate the stability of a complex experimentally observed structure of proteins. We found that supercharged GFP molecules spontaneously assemble into a complex 16-mer structure that we term a protomer, and that under the right conditions an even larger assembly is observed. The protomer structure is very well defined, and we performed simulations to try and understand the mechanics underlying its behavior. In particular, we focused on understanding the role of electrostatics in this system and how varying salt concentrations would alter the stability of the structure, with the ultimate goal of predicting the effects of various mutations on the stability of the structure. There are two separate projects included in this repository, but the two are closely linked. One, the candidate_structures folder, contains the atomistic outputs used to generate coarse-grained configurations. The actual coarse-grained simulations are in the rigid_protein folder, which pulls the atomistic coordinates from the other folder. All data is managed by signac and lives in the workspace directories, which contain various folders corresponding to different parameter combinations. The parameters associated with a given folder are stored in the signac_statepoint.json files within each subdirectory. The atomistic data uses experimentally determined protein structures as a starting point; all of these are stored in the ConfigFiles folder. The primary output is the topology files generated from the PDBs by GROMACS; these topologies are then used to parametrize the Monte Carlo simulations. In some cases, atomistic simulations were actually run as well, and the outputs are stored alongside the topology files. In the rigid_protein folder, the ConfigFiles folder contains MSMS, the software used to generate polyhedral representations of proteins from the PDBs in the candidate_structures folder. All of the actual polyhedral structures are also stored in the ConfigFiles folder. The actual simulation trajectories are stored as general simulation data (GSD) files within each subdirectory of the workspace, along with a single .pos file that contains the shape definition of the (nonconvex) polyhedron used to represent a protein. The logged quantities, such as energies and MC move sizes, are stored in .log files. The logic for the simulations in the candidate_structures project is in the Python scripts project.py, operations.py, and scripts/init.py. The rigid_protein folder also includes the notebooks directory, which contains Jupyter notebooks used to perform analyses, as well as the Python scripts used to actually perform the simulations and manage the data space. In particular, the project.py, operations.py and scripts/init.py scripts contain most of the logic associated with the simulations.
- Keyword:
- Protein assembly, Cryo TEM, Hierarchical Assembly, Monte Carlo simulation, and Coarse-grained simulation
- Discipline:
- Science and Engineering
-
- Creator:
- R Paul Drake
- Description:
- The specific focus of the project was radiative shocks, which develop when shock waves become so fast and hot that the radiation from the shocked matter dominates the energy transport. This in turn leads to changes in the shock structure. Radiative shocks are challenging to simulate, as they include phenomena on a range of spatial and temporal scales and involve two types of nonlinear physics Ð- hydrodynamics and radiation transport. Even so, the range of physics involved is narrow enough that one can hope to model all of it with sufficient fidelity to reproduce the data. CRASH was focused on developing predictions for a sequence of experiments performed in Project Year 5, in which those experiments represented an extrapolation from all previously available data. The previous data involved driving radiative shocks within cylindrical structures, and mainly straight tubes. The Year 5 experiments drove a radiative shock down an elliptical tube. Our long-stated goal for these predictions was that the distribution of predicted values would overlap significantly with the observed distribution. We achieved this goal. Achieving our goal required the conversion of an established space-weather code to model radiative shocks at high energy density. To obtain reasonable fidelity with respect to the experimental data required implementing a laser absorption package, in addition to a hydrodynamic solver, electron physics and heat conduction, and multigroup diffusive radiation transport. The dedicated experiments provided evidence of experimental variability, validation of the calculation of initial shock wave behavior, and validation data at many observation times using cylindrical shock tubes. Following this were preparatory experiments for and finally the execution of the Year 5 experiments. The predictive science research included a wide range of sensitivity studies to determine which variables were important and a sequence of predictive studies focused on specific issues and sets of data. This led ultimately to predictions of shock location for the Year 5 experiments. A conclusion from this project is that the serious quantification of uncertainty in simulations is a dauntingly difficult and expensive prospect. Pre-existing codes are unlikely to have been built with attention to what will be needed to quantify their uncertainty. Pre-existing experimental results are even more unlikely to include a sufficiently detailed analysis of the experimental uncertainties. And this will also be true of most experiments that might be used to validate components of the simulation. The analysis of uncertainty in any one of the physical processes (and related physical constants) is a major effort. And addressing model form uncertainty is an even bigger challenge, that may in principle require development of complete, alternative simulation models. We made a start at all of this, and completed almost none of it. But by the end of a project, we finally had all the pieces in place and working that would have enabled a range of important studies and advances in relatively near-term years. But the sponsor terminated the program after only five years. For most of the participants this was a relatively minor development, although for a few of them it proved to be enormously disruptive. We believe that the cost to the nation, in work that was ready be done but now will not be, was much much larger. The sketch of the target was produced using a drawing program based on the experimental dimensions. The annotated photograph of the target was obtained using a visible-light camera. The colorized radiographs were obtained via backilit-pinhole radiography of a radiative shock propagating down an elliptical tube, at 26 ns after the lasers driving the shock tube fired. The graph showing lines and circles was produced by running many computer models, analyzing their statistical distribution, and measuring actual shock positions in the experiment.
- Keyword:
- Radiative shock
- Discipline:
- Science
-
- Creator:
- Adams, Julia
- Description:
- This eportfolio was created for the Gateway course of the Sweetland Minor in Writing to provide an opportunity for students to reflect on their growing identities as writers, as captured in their text-based and multimodal compositions produced over the Gateway semester. The title of the work contains the pseudonym created for the study while the creator field lists the student's given name to allow proper attribution for their work. The eportfolio is collected here as an artifact in the Sweetland Writing Development Study, which has been published as Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890, and to learn more about the Minor in Writing program and the eportfolio prompts, please see Appendix 2a - https://doi.org/10.3998/mpub.10079890.cmp.1 to the publication.
- Keyword:
- eportfolio , gateway, sitesucker, website, and file directory
- Citation to related publication:
- Gere, A.R., Editor. Developing Writers in Higher Education: A Longitudinal Study, fulcrum.org. University of Michigan Press. https://doi.org/10.3998/mpub.10079890
- Discipline:
- Humanities
-
- Creator:
- Liemohn, Michael W, McCollough, James P, Engel, Miles A, Jordanova, Vania K, and Morley, Steven K
- Description:
- There is a directory tree inside this zipped file. The main directory has the Adobe Illustrator plots of the figures in the paper, Space Weather journal manuscript # 2018SW002067, "Model evaluation guidelines for geomagnetic index predictions" by M. W. Liemohn and coauthors. The three subdirectories have the files for the individual models, the data to which they are compared, and the IDL code used to create the figure plots and metrics calculations. and Date coverage is specific to each model. The RAMSCB model covers January 2005, the WINDMI model all of 2014, and the UPOS model 1.5 solar cycles, from 1 October 2001 through 29 July 2013.
- Keyword:
- space weather, model assessment, time series metrics, and geomagnetic indices
- Discipline:
- Science
-
- Creator:
- Kort, EA, Gvakharia, A, Smith, ML, and Conley, S
- Description:
- Data is collected from research flights based in West Memphis, Arkansas, covering the Mississippi River Valley. The data file contains all merged flight data from each flight day.
- Keyword:
- Greenhouse gas
- Citation to related publication:
- Gvakharia, A., Kort, E.A., Smith, M.L., Conley, S., 2018. Testing and evaluation of a new airborne system for continuous N2O, CO2, CO, and H2O measurements: the Frequent Calibration High-performance Airborne Observation System (FCHAOS). Atmospheric Measurement Techniques; Katlenburg-Lindau 11, 6059. https://doi.org/10.5194/amt-11-6059-2018
- Discipline:
- Science
-
- Creator:
- Lee, Kyu Han, Foxman, Betsy, and Gordon, Aubree
- Description:
- Data include variables used to run mixed effects models examining the association between the nose/throat microbiome and influenza virus infection. Certain individual participant data have been excluded due to identifiability concerns. Data also include the oligotype count table and taxonomic classifications. and Curation Notes: Readme updated Nov. 29, 2018 with context for oligotype and taxonomy files, and citation to associated article.
- Keyword:
- Influenza and Microbiome
- Citation to related publication:
- Lee KH, Gordon A, Shedden K, Kuan G, Ng S, Balmaseda A, Foxman B. The respiratory microbiome and susceptibility to influenza virus infection. PloS One. 2019;14:e0207898. https://doi.org/10.1371/journal.pone.0207898
- Discipline:
- Health Sciences
-
- Creator:
- Reed, Matthew P., Boyle, K.
- Description:
- This is the first physical anthropomorphic test device to be based both on statistical body shape models as well as 3D printing.
- Keyword:
- Child Belt Fit Manikin
- Discipline:
- Engineering
-
- Creator:
- Isaacoff, Benjamin P., Li, Yilai, Lee, Stephen A., and Biteen, Julie S.
- Description:
- This is the experimental data referenced in our manuscript entitled “SMALL-LABS: An algorithm for measuring single molecule intensity and position in the presence of obscuring backgrounds .” These live-cell single-molecule imaging movies were used as a test of the SMALL-LABS single-molecule image analysis algorithm. The dataset comprises two movies; each one is provided both as a .tif stack and as an .avi file. The movie called “low_bg” has a standard low background, and the movie called “high_bg” includes a high fluorescent background produced by an external 488-nm laser.
- Keyword:
- single-molecule, microscopy, image analysis, mirobiology, and bacteria
- Citation to related publication:
- B.P. Isaacoff, Y. Li, S.A. Lee, J.S. Biteen, "SMALL-LABS: Measuring Single-Molecule Intensity and Position in Obscuring Backgrounds." Biophysical Journal, 975-982, 116, 2019. https://doi.org/10.1016/j.bpj.2019.02.006
- Discipline:
- Engineering and Science
-
- Creator:
- Thomaz, Andréa T. (UMICH) and Knowles, L. Lacey (UMICH)
- Description:
- The eastern coastal basins of Brazil are a series of small and isolated rivers that drain directly into the Atlantic Ocean. During the Pleistocene, sea-level retreat caused by glaciations exposed the continental shelf, resulting in enlarged paleodrainages that connected rivers that are isolated today. Using Geographic Information System (GIS), we infer the distribution of these paleodrainages, and their properties for the east Brazilian coast. Here, we publicly make available the shapefiles that demonstrate the paleodrainage structure along the Brazilian coast during the largest sea-level retreats in the Pleistocene, the riverine vectors during the same period and the coastal line for a drop of -125m in the sea.
- Keyword:
- Paleodrainages, Glaciations, Pleistocene, Brazil, Neotropical, and Sea-level retreat
- Discipline:
- Science
-
- Creator:
- Alsip, Peter
- Description:
- Percent Weight Change Data: The model was run continuously on a daily time step for seasonal intervals (Spring: March thru May; Summer: June thru August; Fall: September thru November) as well as contiguously from Spring to Fall to assess total growth over the likely growing season (March thru November). CSV files represent the simulated weight change (%) of Bighead and Silver Carp for the respective time periods associated with the file name. Initial fish mass for each seasonal interval and growing season was 4350 g for Silver Carp and 5480 g for Bighead Carp. Maximum and mean total weight change (%) was determined for three depth ranges (near surface depths [NS]: 0 – 10 m; deep chlorophyll layer depths [DCL]: 10 - 50 m; and whole water column [WC]). Coordinates are in decimal degrees. File naming convention: speciesSeasonWtChange (e.g. bigheadFallWtChange = % weight change of Bighead Carp from September through November) , Monthly Habitat Quality Data: Rdata files contain matrices of Bighead or Silver carp growth rate potential as represented as a mass-proportional growth rate (gram of carp/gram of carp/day [g/g/d]) for the 15th day of each month. Habitats with growth rate potential >= 0 g/g/d were deemed suitable. Matrix attributes: Rows: Row numbers refer to the spatial node with 20 equally-spaced vertical layers. Columns: Columns 1-20 refer to the growth rate potential value for each vertical layer of each node. Vertical layers are evenly spaced based on the total depth of the water column for each node. Depth for each node can be found in the grid attributes data file. Columns 21 ("meanG") and 22 ("Gmax") represent the average and maximum growth rate potential, respectively, of the fish across the whole water column for the corresponding node. File naming convention: species_MonthNumber (e.g. silver_06 = Silver carp growth rate potential in June) Spatial coordinates for each node can be found in the grid attributes data files., Grid attributes data: This Rdata file provides the spatial reference data and other grid attributes. Coordinates are provided in UTM (x & y) and latitude and longitude (decimal degrees). Depth (meters) for each node is listed in this file. , GRP Model code: Details bioenergetics equations, foraging equation, functions for running the model on a monthly time-step and daily time step, and functions for basic analyses. Model is coded in R., and The simulated input data (prey and temperature) used to run our model is not included in this data set. Instead we provide the model code, grid attributes, and outputs of the model. The readRDS() function (R Base Package v.3.5.1) is required to read in .Rdata files in R.
- Keyword:
- Asian Carp, Laurentian Great Lakes, Habitat Suitability, Invasive Species, Lake Michigan, and Ecological Modeling
- Discipline:
- Science
-
- Creator:
- Adam Schneider and Mark Flanner
- Description:
- This dataset contains all data used to generate the figures in The Cryosphere manuscript “Measuring Snow Specific Surface Area with 1.30 and 1.55 micro-meter Bidirectional Reflectance Factors,” by Adam Schneider, Mark Flanner, and Roger De Roo. These data support the theory, calibration, and application of the Near-Infrared Emitting and Reflectance Monitoring Dome (NERD), an instrument engineered to rapidly retrieve surface snow specific surface area in the field. Note that this deposit includes a microCT scan database for natural snowfall samples collected in New Hampshire during 2015-2017, comprised of raw tiff files as well as reconstructions, binarized reconstructions, and some 3D model reconstructions. and Running python scripts generally require that the following packages are installed: NumPy, SciPy, Matplotlib, Pandas, and ipdb (for debugging).
- Keyword:
- Snow specific surface area, Monte Carlo, X-ray micro-computed tomography, SNICAR, Near-Infrared Emitting and Reflectance-Monitoring Dome, Bidirectional reflectance factor, Cryosphere, and 3D
- Discipline:
- Science
-
- Creator:
- Huang, Yihe
- Description:
- Geological and geophysical observations reveal along-strike fault zone heterogeneity on major strike-slip faults, which can play a significant role in earthquake rupture propagation and termination. I present 2D dynamic rupture simulations to demonstrate rupture characteristics in such heterogeneous fault zone structure. The modeled rupture is nucleated in a damaged fault zone and propagates on a preexisting fault towards the zone of intact rocks. There is an intermediate range of nucleation lengths that only allow rupture to spontaneously propagate in the damaged fault zone but not in a homogeneous medium. I find that rupture with an intermediate nucleation length tends to stop when it reaches the zone of intact rocks, especially when the rupture propagation distance in the damaged fault zone is relatively short and when the damaged fault zone is relatively narrow or smooth in the fault-normal direction. Pronounced small-scale heterogeneity within the damaged fault zone also contributes to such early rupture termination. In asymmetric fault zones bisected by a bimaterial fault, rupture moving in the direction of slip of faster rocks tends to terminate under the same conditions as in symmetric fault zones, whereas rupture moving in the direction of slip of slower rocks can penetrate into the zone of intact rocks. Break-through rupture is allowed when a sufficiently-large asperity is located at the edge of the zone of intact rocks. The results suggest the along-strike fault zone heterogeneity can play a critical role in seismicity distribution. The data set contains multiple folders of simulation results from the SEM2DPACK that demonstrate the above findings. The folder name includes the model parameters in each simulation as explained in the README file. The Flt01_sem2d.data file in the folder documents the slip, slip rate and stresses from each simulation. The files are also explained in the manual of SEM2DPACK ( http://web.gps.caltech.edu/~ampuero/soft/users_guide_sem2dpack.pdf). Please refer to section 4.6 in the manual and use “sem2d_read_fault.m” in the POST folder of SEM2DPACK to plot the results.
- Keyword:
- Damaged fault zone, fault zone heterogeneity, earthquake rupture termination, and seismicity distribution
- Discipline:
- Science
-
- Creator:
- Penner, Joyce E., Zhou, Cheng, Garnier, Anne, and Mitchell, David
- Description:
- This data set contains the scripts and data sets needed to create the 9 figures in the referenced publication.
- Keyword:
- Anthropogenic Aerosol indirect effects, cirrus clouds, and ice nucleation
- Citation to related publication:
- Penner, J. E., Zhou, C., Garnier, A., & Mitchell, D. L. (2018). Anthropogenic aerosol indirect effects in cirrus clouds. Journal of Geophysical Research: Atmospheres,123, 11,652–11,677. https://doi.org/10.1029/2018JD029204
- Discipline:
- Science
-
- Creator:
- York, Jeremy, Gutmann, Myron, and Berman, Francine
- Description:
- The data were collected as part of the Stewardship Gap project, an 18-month study to investigate how research data and creative outputs supported by public or non-profit funding in the United States are being stewarded. These data were collected as part of a literature search of sources about research data stewardship and relate most directly to work describing “What We Know About the Stewardship Gap.” In this work, we categorized “gaps” in stewardship identified in the literature, how the gaps were related to one another, and efforts to measure and develop metrics for the gaps.
- Keyword:
- digital curation, digital preservation, research data, data stewardship, and data sustainability
- Discipline:
- Other
-
- Creator:
- Mirshams Shahshahani, Payam
- Description:
- Investigating minimum human reaction times is often confounded by the motivation, training, and state of arousal of the subjects. We used the reaction times of athletes competing in the shorter sprint events in the Athletics competitions in recent Olympics (2004-2016) to determine minimum human reaction times because there's little question as to their motivation, training, or state of arousal. The reaction times of sprinters however are only available on the IAAF web page for each individual heat, in each event, at each Olympic. Therefore we compiled all these data into two separate excel sheets which can be used for further analyses.
- Keyword:
- minimum reaction time, sprinter, Olympics, Athletics, sex difference, starting block, and false start
- Citation to related publication:
- Mirshams Shahshahani P, Lipps DB, Galecki AT, Ashton-Miller JA (2018) On the apparent decrease in Olympic sprinter reaction times. PLoS ONE 13(6): e0198633. https://doi.org/10.1371/journal.pone.0198633
- Discipline:
- Engineering, Health Sciences, Science, Other, and General Information Sources
-
- Creator:
- Nguyen, Thanh H., Wright, Mason, Wellman, Michael P., and Singh, Satinder
- Description:
- In this work , we study the problem of allocating limited security countermeasures to protect network data from cyber-attacks, for scenarios modeled by Bayesian attack graphs. We consider multi-stage interactions between a network administrator and cybercriminals, formulated as a security game. We propose parameterized heuristic strategies for the attacker and defender and provide detailed analysis of their time complexity. Our heuristics exploit the topological structure of attack graphs and employ sampling methods to overcome the computational complexity in predicting opponent actions. Due to the complexity of the game, we employ a simulation-based approach and perform empirical game analysis over an enumerated set of heuristic strategies. Finally, we conduct experiments in various game settings to evaluate the performance of our heuristics in defending networks, in a manner that is robust to uncertainty about the security environment.
- Keyword:
- Empirical Game-Theoretic Analysis, Multi-stage Security Games, Attack Graph, Game Theory, and Moving Target Defense
- Discipline:
- Science and Engineering
-
- Creator:
- Bemmels, Jordan B. and Dick, Christopher W.
- Description:
- Raw SNP genotypes are provided in STRUCTURE format, with a maximum of one SNP reported per ddRAD locus. The files "caryco_SNP.str" and "caryov_SNP.str" are genotypes for Carya cordiformis and Carya ovata, respectively. The first column of each file is the individual name, the second column is the population (see original publication for information on population locations), and the remaining columns are genotypes of individual SNPs. Rows represent individuals, with the diploid genotypes contained on two lines per individual. Missing data are entered as "0" (zero). The first row is a header with a unique identifier for each SNP. and Occurrence records for each species are provided in the file "occs_carya.csv" and contain the latitude and longitude of each record.
- Keyword:
- eastern North America, glacial refugia, phylogeography, temperate trees, and single nucleotide polymorphisms
- Citation to related publication:
- Bemmels, J.B., and C.W. Dick. 2018. Genomic evidence of a widespread southern distribution during the Last Glacial Maximum for two North American hickory species. Journal of Biogeography, 45: 1739– 1750. https://doi.org/10.1111/jbi.13358
- Discipline:
- Science
-
- Creator:
- Yakel, Elizabeth, Suzuka, Kara, and Frank, Rebecca
- Description:
- These data collection and analysis protocols and the attribute list are part of a larger research project, the Institute of Museum and Library Services # LG-06-14-0122-14. funded "Qualitative Data Reuse: Records of Practice in Educational Research and Teacher Development." As such, our research questions concern data reuse and data curation: 1. Data Reuse: What are the dynamics of the data reuse lifecycle (from selection of data through the reuse of data) in a qualitative digital educational archive? 2. Data curation: What special issues are involved in curating digital qualitative data for reuse? • How can qualitative data archives best support data reusers throughout the data reuse lifecycle? • What aspects of this experience are informative for other types of qualitative data archives? The overall project employed mixed methods and collected interview, observational, and trace data from data reusers of video records of practice in education and repositories holding video records of practice. The interview protocol and interview codeset relate to the 44 interviews conducted with researchers and teacher-educators who have reused digital video records of practice as qualitative data for research and/or teaching.
- Keyword:
- Data curation, Data reuse, and Digital records of practice in education
- Discipline:
- Other
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos made in the course of linguistic fieldwork. Includes blacksmithing, hide tanning, weaving, cotton spinning, weaving, reed flute making, pottery making, and construction in Dogon villages, and exotic traditional hair styling in Hombori (Songhay). Some of the videos are "compilations" of many short clips, others are in standard documentary form.
- Keyword:
- Mali, Dogon, Hombori, weaving, pottery, spinning, reed flute making, tanning, and coiffure
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Videos done in the course of linguistic fieldwork in Central Mali. They are presented here in two or three video formats. The videos show how Dogon villagers press oil from nuts and fruit pits, make liquid soda ash (French potasse), and make soap. Some are in standard documentary form, some early ones ("compendiums") are sequences of brief clips. Most were made in Beni village or in the Douentza area.
- Keyword:
- Mali, Dogon, vegetable oils, soapmaking, and soda ash
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- These videos were shot in Dogon villages. They show how wild foods (insects and plants) are obtained and consumed. Most are presented here in three video formats.
- Keyword:
- Mali, Dogon, honey, edible insects, and water lilies
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- These videos were produced in the course of linguistic fieldwork in central Mali. They are presented here in multiple video formats. The cattle herders par excellence in the zone are traditional Fulbe, who enter towns and Dogon villages to sell fresh and curdled milk along with butter.
- Keyword:
- Mali, Fulbe, cattle herding, and curdled milk
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- These are documentaries made in the course of linguistic fieldwork in central Mali. Most are presented here in three different video formats. All of those in the present group are of Dogon people. Beni village near Douentza figures in many of them. "Cooked spiced millet with roselle leaves" and "steamed cowpeas with millet" are from Walo village. "Cream of millet with tamarind" is from Bendiely village. "Beer brewing" is from Yanda village. "Groundnuts roasted and boiled" is from near Sévaré. "Macari" is from Kowo village near Sévaré. See also the separate works "Central Mali agriculture documentaries" and "Central Mali herding and dairy documentaries".
- Keyword:
- Mali, Dogon, food preparation, and beer brewing
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Jalkunan is a small-population Mande language spoken in Blédougou village cluster in the Banfora plateau in SW Burkina Faso.A grammar was published electronically at Language Description Heritage Library in 2017. http://ldh.clld.org/2017/01/01/escidoc2346932/ This is backed up at Deep Blue documents. http://hdl.handle.net/2027.42/139025 http://dogonlanguages.org/other#mande Seven texts were recorded digitally in 2016 and are archived here. Three of them (texts 1, 2, and 4) were transcribed and translated at the end of the published grammar. The remaining tapes are not transcribed as of May 2018. I give permission to other linguists to transcribe, translate, and/or analyse the remaining texts.
- Keyword:
- Jalkunan, Mande, Audio, and Recording
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Welling, Daniel and Walsh, Brian
- Description:
- The goal of this simulation was to examine the spread of magnetic reconnection across the dayside magnetopause upon the arrival of a tangential discontinuity of the interplanetary magnetic field from a purely northward to southward configuration. Simple solar wind conditions were used to give us input into the system. A very high resolution grid setup was used in BATS-R-US.
- Keyword:
- space science, magnetosphere, magnetohydrodynamics, magnetopause, and magnetic reconnection
- Citation to related publication:
- Walsh, B. M., Welling, D. T.,Zou, Y., & Nishimura, Y. (2018). A maximum spreading speed for magnetopause reconnection. Geophysical Research Letters, 45, 5268–5273. https://doi.org/10.1029/2018GL078230
- Discipline:
- Science
-
- Creator:
- Ward, Jamie L ., Flanner, Mark G., Bergin, Mike, Dibb, Jack E., Polashenski, Chris M., Soja, Amber J., and Thomas, Jennie L.
- Description:
- Biomass burning produces smoke aerosols that are emitted into the atmosphere. Some smoke constituents, notably black carbon (BC), are highly effective light-absorbing aerosols (LAA). Emitted LAA can be transported to high albedo regions like the Greenland Ice Sheet (GrIS) and affect local snowmelt. In the summer, the effects of LAA in Greenland are uncertain. To explore how LAA affect GrIS snowmelt and surface energy flux in the summer, we conduct idealized global climate model simulations with perturbed aerosol amounts and properties in the GrIS snow and overlying atmosphere. The in-snow and atmospheric aerosol burdens we select range from background values measured on the GrIS to unrealistically high values. This helps us explore the linearity of snowmelt response and to achieve high signal-to-noise ratios. With LAA operating only in the atmosphere, we find no significant change in snowmelt due to the competing effects of surface dimming and tropospheric warming. Regardless of atmospheric LAA presence, in-snow BC-equivalent mixing ratios greater than ~60 ng/g produce statistically significant snowmelt increases over much of the GrIS. We find that net surface energy flux changes correspond well to snowmelt changes for all cases. The dominant component of surface energy flux change is solar energy flux, but sensible and longwave energy fluxes respond to temperature changes. Atmospheric LAA dampen the magnitude of solar radiation absorbed by in-snow LAA when both varieties are simulated. In general, the significant melt and surface energy flux changes we simulate occur with LAA quantities that have never been recorded in Greenland.
- Keyword:
- climate, Greenland Ice Sheet, black carbon, biomass burning, snowmelt, and surface energy balance
- Citation to related publication:
- Ward, J.L., et al. (2018). Modeled Response of Greenland Snowmelt to the Presence of Biomass Burning-Based Absorbing Aerosols in the Atmosphere and Snow. Journal of Geophysical Research: Atmospheres. 123, 6122– 6141. https://doi.org/10.1029/2017JD027878
- Discipline:
- Science
-
- Creator:
- Wozniak, Matthew C., Steiner, Allison L., and Solmon, Fabien
- Description:
- Pollen grains emitted from vegetation can rupture, releasing subpollen particles (SPPs) as fine atmospheric particulates. Previous laboratory research demonstrates potential for SPPs as efficient cloud condensation nuclei (CCN). We develop the first model of atmospheric pollen grain rupture, and implement the mechanism in regional climate model simulations over spring pollen season in the United States with a CCN-dependent moisture scheme. The source of SPPs (surface or in-atmosphere) depends on region and sometimes season, due to the distribution of relative humidity and rain. Simulated concentrations of SPPs are approximately 1-10 or 1-1,000 cm-3, depending on the number of SPPs produced per pollen grain (nspg). Lower nspg (103) produces a negligible effect on precipitation, but high nspg (106) in clean continental CCN background concentrations (100 CCN cm-3) shows SPPs suppress average seasonal precipitation by 32% and shift rates from heavy to light while increasing dry days. This effect is likely smaller for polluted air. pollen_rupture_precipitation_BASE_ensemble_daily.nc - data for BASE ensemble average pollen_rupture_precipitation_SPPHIGH_ensemble_daily.nc - data for SPPHIGH ensemble average pollen_rupture_precipitation_SPPLIT_ensemble_daily.nc - data for SPPLIT ensemble average
- Discipline:
- Science
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Humburi Senni (Songhay family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Songhay, Humburi Senni, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Fulankiriya (Songhayfamily) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Songhay, Fulankiriya, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bozo Jenama (Mande family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Mande, Bozo Jenama, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Moore (Gur family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Gur, Moore, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Yanda Dom (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Yanda Dom, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Toro Tegu (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Toro Tegu, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tomo Kan(Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tomo Kan, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Toro So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Toro So, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tommo So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tommo So, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tiranige (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tiranige, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- MacEachern, Mark and Muzyk, Andrew
- Description:
- The systematic review explores the role of the emergency department in naloxone distribution and harm reduction strategies associated with opioid use.
- Keyword:
- Opioid use, Systematic review, Emergency department, Literature searches, and Naloxone
- Citation to related publication:
- Gunn AH, Smothers ZPW, Schramm-Sapyta N, Freiermuth CE, MacEachern M, Muzyk AJ. (2018). The emergency department as an opportunity for naloxone distribution. Western Journal of Emergency Medicine, 19(6), 1036-42. doi: 10.5811/westjem.2018.8.38829 https://doi.org/10.5811/westjem.2018.8.38829
- Discipline:
- Health Sciences
-
- Creator:
- Moniri, Saman, Xiao, Xianghui, and Shahani, Ashwin J.
- Description:
- The data file is comprised of 22,500 X-ray projections (15 scans of 1500 projections each) recorded during solidification of Al-Ge-Na. The raw data file is in .hdf format and can be reconstructed into .tiff, e.g., by using the TomoPy toolbox in Python.
- Keyword:
- X-ray microtomography, synchrotron, in situ, 4D materials science, irregular eutectic, growth, and solidification
- Citation to related publication:
- Moniri, S., Xiao, X., & Shahani, A. J. (2019). The mechanism of eutectic modification by trace impurities. Scientific Reports, 9(1), 3381. https://doi.org/10.1038/s41598-019-40455-3
- Discipline:
- Engineering
-
- Creator:
- Gliske, Stephen V and Stacey, William C
- Description:
- This data is part of a large program to translate detection and interpretation of HFOs into clinical use. A zip file is included which contains hfo detections, metadata, and Matlab scripts. The matlab scripts analyze this input data and produce figures as in the referenced paper (note: the blind source separation method is stochastic, and so the figures may not be exactly the same). A file "README.txt" provides more detail about each individual file within the zip file.
- Keyword:
- hfo, high frequency oscillation, ripple, fast ripple, blind source separation, non-negative matrix factorization, and temporal variability
- Discipline:
- Science, Engineering, and Health Sciences
-
- Creator:
- Carlevaris-Bianco, Nicholas , Ushani, Arash , and Eustice, Ryan
- Description:
- This is a large scale, long-term autonomy dataset for robotics research collected on the University of Michigan’s North Campus. The dataset consists of omnidirectional imagery, 3D lidar, planar lidar, GPS, and proprioceptive sensors for odometry collected using a Segway robot. The dataset was collected to facilitate research focusing on longterm autonomous operation in changing environments. The dataset is comprised of 27 sessions spaced approximately biweekly over the course of 15 months. The sessions repeatedly explore the campus, both indoors and outdoors, on varying trajectories, and at different times of the day across all four seasons. This allows the dataset to capture many challenging elements including: moving obstacles (e.g., pedestrians, bicyclists, and cars), changing lighting, varying viewpoint, seasonal and weather changes (e.g., falling leaves and snow), and long-term structural changes caused by construction projects. To further facilitate research, we also provide ground-truth pose for all sessions in a single frame of reference. and A detailed description of the dataset and the methods used to generate it is in the document nclt.pdf. If you use this dataset in your research please cite: Carlevaris-Bianco, N., Ushani, A., Eustice, R. (2021). The University of Michigan North Campus Long-Term Vision and LIDAR Dataset [Data set]. University of Michigan - Deep Blue. https://doi.org/10.7302/7rnm-6a03
- Keyword:
- Long-term SLAM, place recognition, lidar, computer vision, and field and service robotics
- Citation to related publication:
- Carlevaris-Bianco, Nicholas, et al. “University of Michigan North Campus Long-Term Vision and Lidar Dataset.” The International Journal of Robotics Research, vol. 35, no. 9, Aug. 2016, pp. 1023–1035, doi:10.1177/0278364915614638.
- Discipline:
- Engineering
-
- Creator:
- Platt, Edward L.
- Description:
- We analyzed the structure of English language WikiProject coeditor networks and compare to the efficiency and performance of those projects. The list of WikiProjects give an integer key, title, and unique URL for each project. The network files are indexed by the integer keys. The quality assessment logs are indexed by project title and article title. and Curation Notes: Readme file was updated Oct. 11, 2018 to include additional context on research, file contents, and organization (see first section of readme), and explanation of additional license in the deposit referring to the 'logbook' module.
- Keyword:
- wikipedia
- Citation to related publication:
- Platt, E. L., Romero, D. M. (2018). Network Structure, Efficiency, and Performance In WikiProjects. In ICWSM. https://www.aaai.org/ocs/index.php/ICWSM/ICWSM18/paper/view/17901
- Discipline:
- Social Sciences
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tebul Ure (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Tebul Ure, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Penange (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Penange, Dogon, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Nanga (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Nanga, Dogon, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- images of villages in Mali in which Mombo (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Mombo, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Donno So (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Donno So, Kamma So, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Dogul Dom (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Dogul Dom, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bunoge (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Bunoge, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Cole, Shannon L
- Description:
- The nucleus accumbens (NAc) contains multiple subpopulations of medium spiny neurons (MSNs): one subpopulation expresses D1-type dopamine receptors, another expresses D2-type receptors, and a third expresses both. The relative roles in NAc of D1 neurons versus D2 neurons in appetitive motivation were assessed here. Specifically, we asked whether D1-Cre mice or D2-Cre mice would instrumentally seek optogenetic self-stimulation of those respective subpopulations in NAc, or instead avoid NAc laser stimulation. and Some statistical forms have been exported from SPSS for the purposes of accessibility to viewers. Please see the "readme" text for descriptions of each individual excel file.
- Keyword:
- Motivation Striatum Optogenetics
- Citation to related publication:
- Cole, S. L., Robinson, M. J. F., & Berridge, K. C. (2018). Optogenetic self-stimulation in the nucleus accumbens: D1 reward versus D2 ambivalence. PLOS ONE, 13(11), e0207694. https://doi.org/10.1371/journal.pone.0207694
- Discipline:
- Science
-
- Creator:
- Moyer, Cheryl A
- Description:
- Data reflect the knowledge, attitudes, and beliefs of health care providers regarding neonatal near-misses in Neonatal Intensive Care Units (NICUs) in southern Ghana.
- Keyword:
- qualitative methods, neonatal mortality, neonatal near-misses, and developing country
- Discipline:
- Health Sciences
-
- Creator:
- Mason, Lacey A., Riseng, Catherine M., Layman, Andrew J., and Jensen, Robert
- Description:
- Wind exposure is a key physical driver of coastal systems in aquatic environments influencing circulation and wave dynamics. A measure of wind exposure is fetch, the distance over which wind can travel across open water. In large lake systems, such as the Laurentian Great Lakes, estimating fetch has proved to be difficult due to their vast size and complex topobathymetry. Here we describe the development of two spatially discrete indicators of exposure to provide a more accurate indicator of influence of wind exposure in the nearshore of the Laurentian Great Lakes. We summarized wind data from offshore buoys and leveraged existing tools to calculate effective fetch and relative exposure index (effective fetch scaled by mean wind speed) at a 30 m grid cell resolution. We validated these models by comparing our exposure maps to the U.S. Army Corps of Engineers Wave Information Studies models and found general agreement. These exposure maps are available for public download for the years 2004-2014.
- Keyword:
- GLAHF, Great Lakes, waves, fetch, REI, wind exposure, and geospatial
- Discipline:
- Science
-
- Creator:
- Regoli, Leonardo H.
- Description:
- The data contained in the file comprises those collected during the characterization of the sensor as described in the article "Investigation of a low-cost magneto-inductive magnetometer for space science applications" (cited below). This includes:, Resolution , Stability , Linearity , and Frequency response
- Keyword:
- magnetometer, magnetic fields, CubeSat, and geomagnetic activity
- Discipline:
- Engineering
-
- Creator:
- Dillahunt, Tawanna R., Lam, Jason, Lu, Alex, and Wheeler, Earnest
- Description:
- Today’s Information and Communication Technologies (ICTs) support job searches, resume creation and the ability to highlight employment skills on social media. However, these technological tools are often tailored to high-income, highly educated users, and white-collar professionals. It is unclear what interventions address the needs of job seekers who have limited resources, education, or who may be underserved in other ways. We gathered insights from past literature and generated ten tangible design concepts to address the needs of underserved job seekers. We then conducted a needs validation and speed dating study to understand which concepts were most viable among our population. We found that the three most preferred concepts immediately addressed job seekers’ most practical needs. and Per reviewer feedback, we aim to improve the utility of this publication to other scholars by including our research materials here. This dataset includes the interview script, storyboards that were used in the needs validation study, the demographics survey/questionnaire, and the consent form.
- Keyword:
- Design, Underserved job seekers, Storyboards, Speed dating, Employment, and Needs Validation
- Citation to related publication:
- Tawanna R. Dillahunt, Jason Lam, Alex Lu, and Earnest Wheeler. 2018. Designing Future Employment Applications for Underserved Job Seekers: A Speed Dating Study. In Proceedings of the 2018 Designing Interactive Systems Conference (DIS '18). ACM, New York, NY, USA, 33-44. DOI: https://doi.org/10.1145/3196709.3196770 and http://www.tawannadillahunt.com/wp-content/uploads/2018/05/disfp453-dillahuntA.pdf
- Discipline:
- Other
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Atlantic Fulfulde is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Fulfulde, villages, Atlantic Fulfulde, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Ben Tey (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Ben Tey, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Bankan Tey (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Bankan Tey, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali (and a few in Burkina) in which Jamsay (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- villages, Dogon, Ampari, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali in which Tamashek (Berber family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Tamashek, villages, Berber, and Mali
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- images of villages in Mali in which Bangime is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Mali, Bangime, and villages
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Heath, Jeffrey
- Description:
- Images of villages in Mali (and a few in Burkina) in which Jamsay (Dogon family) is the primary language. Each file name contains important information about the photos, and are structured thus: LanguageFamily_Language_IdentificationNumber_GeographicCoordinate_Description_Date_InitialsOfThePhotographer
- Keyword:
- Mali, Dogon, Jamsay, and villages
- Citation to related publication:
- Moran, Steven & Forkel, Robert & Heath, Jeffrey (eds.) 2016. Dogon and Bangime Linguistics. Jena: Max Planck Institute for the Science of Human History. http://dogonlanguages.org
- Discipline:
- Humanities
-
- Creator:
- Azari, A. R.
- Description:
- ABSTRACT: We present a statistical study of interchange injections in Saturn's inner and middle magnetosphere focusing on the dependence of occurrence rate and properties on radial distance, partial pressure, and local time distribution. Events are evaluated from over the entirety of the Cassini mission’s equatorial orbits between 2005 and 2016. We identified interchange events from CHarge Energy Mass Spectrometer (CHEMS) H+ data using a trained and tested automated algorithm, which has been compared with manual event identification for optimization. We provide estimates of interchange based on intensity, which we use to investigate current inconsistencies in local time occurrence rates. This represents the first automated detection method of interchange, estimation of injection event intensity, and comparison between interchange injection survey results. We find the peak rates of interchange occur between 7 - 9 Saturn radii and that this range coincides with the most intense events as defined by H+ partial particle pressure. We determine that nightside occurrence dominates as compared to the dayside injection rate, supporting the hypothesis of an inversely dependent instability growth rate on local Pedersen ionospheric conductivity. Additionally, we observe a slight preference for intense events on the dawn side, supporting a triggering mechanism related to large-scale injections from downtail reconnection. Our observed local time dependence paints a dynamic picture of interchange triggering due to both the large-scale injection driven process and ionospheric conductivity. Within this repository we provide a readme file (description of data file and usage) and the event list provided as a .txt file. The event list includes start and stop times, comparison to previous surveys, and the average location of events identified. Additional formats are available on request. , Further details on this method can be found in "Interchange Injections at Saturn: Statistical Survey of Energetic H+ Sudden Flux Intensifications" by Azari et al., 2018 in the Journal of Geophysical Research: Space Physics. https://doi.org/10.1029/2018JA025391. , and Curation notes: The files 'events_CORRECTED.txt' and 'readme_UPDATED.rtf' were added to this record July 31 and August 7, 2018 and supersede the previous data file 'events.txt' and readme file 'readme.rtf'. The file 'events.txt' uploaded May 9, 2018 should not be used, as this file contains a duplication error where the last column, InAllSurveys, is incorrectly presented as a duplicate of the column InAnySurvey. 'readme_UPDATED.rtf' contains additional context and updated references to the new data file.
- Keyword:
- Planetary Science, Automated Event Detection, Space Physics, Magnetospheric Physics, Interchange Injections, and Saturn
- Discipline:
- Science
-
- Creator:
- Tye, Alexander R, Wolf, Aaron S, and Niemi, Nathan A
- Description:
- Detrital zircon age distributions provide robust insights into past sedimentary systems, but these age distributions are often complex and multi-peaked, with sample sizes too small to confidently resolve population distributions. This limited sampling hinders existing quantitative methods for comparing detrital zircon age distributions, which show systematic dependence on the sizes of compared samples. The proliferation of detrital zircon studies motivates the development of more robust quantitative methods. We present the first attempt, to our knowledge, to infer probability model ensembles (PMEs) for samples of detrital zircon ages using a Bayesian method. Our method infers the parent population age distribution from which a sample is drawn, using a Monte Carlo approach to aggregate a representative set of probability models that is consistent with the constraints that the sample data provide. Using the PMEs inferred from sample data, we develop a new estimate of correspondence between detrital zircon populations called Bayesian Population Correlation (BPC). Tests of BPC on synthetic and real detrital zircon age data show that it is nearly independent from sample size bias, unlike existing correspondence metrics. Robust BPC uncertainties can be readily estimated, enhancing interpretive value. When comparing two partially overlapping zircon age populations where the shared proportion of each population is independently varied, BPC results conform almost perfectly to expected values derived analytically from probability theory. This conformity of experimental and analytical results permits direct inference of the shared proportions of two detrital zircon age populations from BPC. We provide MATLAB scripts to facilitate the procedures we describe.
- Keyword:
- provenance, statistics, zircon, Bayesian, detrital, and density estimation
- Citation to related publication:
- A.R. Tye, A.S. Wolf, N.A. Niemi, Bayesian population correlation: A probabilistic approach to inferring and comparing population distributions for detrital zircon ages, Chemical Geology, Volume 518, 2019, Pages 67-78, ISSN 0009-2541, https://doi.org/10.1016/j.chemgeo.2019.03.039
- Discipline:
- Science
-
- Creator:
- Ozturk, Dogacan
- Description:
- The global magnetosphere-ionosphere-thermosphere (M-I-T) system is intrinsically coupled and susceptible to external drivers such as solar wind dynamic pressure enhancements. In order to understand the large-scale dynamic processes in the M-I-T system due to the compression from the solar wind, the 17 March 2015 sudden commencement was studied in detail using global numerical models. This data set is comprised of the simulation data generated from these models. and NOTE: The following changes were made to this dataset on March 28, 2018. First, two mp4 files were added. Second, the symbol representing "degree" was not rendering properly in the README file. The symbols were removed and replaced with the word "degree". Third, the metadata in the "methodology" and "description" fields were revised for content and clarity. On April 16, 2018 a citation to the corresponding article was added to the metadata record.
- Keyword:
- MHD model, BATS'R'US, and GITM
- Citation to related publication:
- Ozturk, D. S., Zou, S., Ridley, A. J., & Slavin, J. A. (2018). Modeling study of the geospace system response to the solar wind dynamic pressure enhancement on 17 March 2015. Journal of Geophysical Research: Space Physics, 123, 2974–2989. https://doi.org/10.1002/2017JA025099
- Discipline:
- Science
-
- Creator:
- Johnson, Jena E.
- Description:
- Note: The "Readme_Metadata" file was updated on March 15, 2018 to include a citation to the related article making use of this data and was reformatted to be presented as a pdf file rather than as a docx file. and This data set is comprised of synchrotron-based X-ray transmission and absorption spectroscopy data as well as X-ray diffraction patterns that were performed to characterize the best-preserved examples of nanoscale iron silicate mineral inclusions from 2.5 billion-year-old Banded Iron Formations (BIFs) and ferruginous cherts.
- Keyword:
- Precambrian banded iron formations and nanoparticle inclusions of iron silicates in chert
- Citation to related publication:
- Johnson, J. E., Muhling, J. R., Cosmidis, J., Rasmussen, B. & Templeton, A. S. (2018). Low-Fe(III) Greenalite Was a Primary Mineral from Neoarchean Oceans. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL076311
- Discipline:
- Science
-
- Creator:
- Sick, Volker , Reuss, David L, and Greene, Mark L
- Description:
- This archive contains data files from spark-ignited homogeneous combustion internal combustion engine experiments. Included are high-resolution two-dimensional two-component velocity fields acquired at two 5 x 6 mm regions, one near the head and one near the piston. Crank angle resolved heat flux measurements were made at a third location in the head. The engine was operated at 40 kPa, 500 and 1300 RPM, motor and fired. Included are in-cylinder pressure measurements, external pressure and temperature data, as well as details on the geometry of the optical engine to enable setups of simulation configurations.
- Keyword:
- combustion, internal combustion engine, heat Transfer, particle image velocimetry, in-cylinder flow, TCC III engine , optical engine, CFD validation, PIV, boundary layer, and turbulence
- Discipline:
- Engineering
-
- Creator:
- Berlin, Nicholas and MacEachern, Mark
- Description:
- This systematic review and meta-analysis assesses decision aids in the context of patients considering post-mastectomy breast reconstruction. and NOTE: An updated Read Me file was added to this data set on May 24, 2018 replacing the original.
- Keyword:
- Post-mastectomy, Decision-making, Systematic review, Decision aids, Meta-analysis, and Breast reconstruction
- Citation to related publication:
- Berlin NL, Tandon VJ, Hawley ST, et al. Feasibility and Efficacy of Decision Aids to Improve Decision Making for Postmastectomy Breast Reconstruction: A Systematic Review and Meta-analysis. Med Decis Making. 2019;39(1):5–20. https://doi.org/10.1177/0272989X18803879
- Discipline:
- Health Sciences
-
- Creator:
- Flanner, Mark
- Description:
- Greenhouse gas (GHG) additions to Earth’s atmosphere initially reduce global outgoing longwave radiation (OLR), thereby warming the planet. In select environments with temperature inversions, however, increased GHG concentrations can actually increase local OLR. Negative top-of-atmosphere and effective radiative forcing (ERF) from this situation give the impression that local surface temperatures could cool in response to GHG increases. Here we consider an extreme scenario in which GHG concentrations are increased only within the warmest layers of winter near-surface inversions of the Arctic and Antarctic. We find, using a fully coupled Earth system model, that the underlying surface warms despite the GHG addition exerting negative ERF and cooling the troposphere in the vicinity of the GHG increase. This unique radiative forcing and thermal response is facilitated by the high stability of the polar winter atmosphere, which inhibits thermal mixing and amplifies the impact of surface radiative forcing on surface temperature. These findings also suggest that strategies to exploit negative ERF via injections of short-lived GHGs into inversion layers would likely be unsuccessful in cooling the planetary surface. and Note: A revised data description file was added to this work on April 11, 2018 containing additional information about the data set than was provided in the original description. Additional keywords and a full citation to the related article were added as well.
- Keyword:
- climate, greenhouse gas, polar inversion layers, radiative forcing (and/or effective radiative forcing), and MODTRAN simulation
- Discipline:
- Science
-
- Creator:
- de Oliveira, Stephanie and Nisbett, Richard E.
- Description:
- These studies assess the effect of social identity on judgement and are described in "Demographically diverse crowds are typically not much wiser than homogeneous crowds" (de Oliveira, S., & Nisbett, R. E. Proceedings of the National Academy of Sciences, 2018) and the article’s Supporting Information appendix. Some studies use a variety of questions to assess multiple social identity factors; the other studies are narrowed to particular social identity variables. Each study includes some type of estimation or prediction task, collects social identity variables, and asks participants to indicate their answer strategies. Study 1 is a trivia and prediction task based on football team fan identity. Study 2 reports on demographics plus political and religious identity and asks participants to predict vote percentages in presidential primaries. Study 3 participants estimate the percentage of Americans that support statements on various polarizing political views and give likelihood ratings for presidential candidates to win the Iowa caucus; a variety of identity questions are asked including political and religious identity. Study 4 includes demographics plus political and religious identity questions and asks participants to predict how the candidates would perform in the 2016 United States presidential election. Study 5 asks participants to guess the popularity rating of books that had either gender-specific or gender-neutral appeal, and also to rate their own interest in the books. Demographic-based social identity variables such as sex are included. Study 6 includes a wide variety of social identity variables and asks participants to estimate the likelihood of events occurring in the near future. Study 7 participants are from diverse national backgrounds and completed judgement tasks that predicted stock prices, Olympic performance, and news events outcomes. The data are generally interpretable when examined in conjunction with the target article. A new data file for Study 6 was uploaded on April 4, 2018 to include variables that were inadvertently left out of the original Study 6 file. A new data file for Study 7 was uploaded on April 6, 2018 to include variables that were inadvertently left out of the original Study 7 file. A codebook for this data set was added on April 6, 2018.
- Keyword:
- Judgment/Decision Making and Estimate aggregation
- Citation to related publication:
- Demographically diverse crowds are typically not much wiser than homogeneous crowds. Stephanie de Oliveira Richard E Nisbett Proceedings of the National Academy of Sciences of the United States of America vol. 115 issue 9 (2018) pp: 2066-2071. https://doi.org/10.1073/pnas.1717632115
- Discipline:
- Social Sciences
-
- Creator:
- Geng, Yina, Van Anders, Greg, and Glotzer, Sharon C.
- Description:
- The data are the 13 target structures used in developing our model for predicting colloidal crystal structures from the geometries of particular shapes. The target structures are: simple cubic (SC), body-centered cubic (BCC), face-centered cubic (FCC), simple chiral cubic (SCC), hexagonal (HEX-1-0.6), diamond (D), graphite (G), honeycomb (H), body-centered tetragonal (BCT-1-1-2.4), high-pressure Lithium (Li), Manganese (beta-Mn), Uranium (beta-U), Tungsten (beta-W). At least nine simulations were run on each of the target structures. All of the data are formatted as .pos files.
- Keyword:
- Inverse Design and Machine Learning
- Discipline:
- Science
-
- Creator:
- Fries, Kevin J
- Description:
- This data is in support of the publication in review "Using sensor data to dynamically map large-scale models to site-scale forecasts: A case study using the National Water Model". It is all the raw data extracted from the NWM flow forecasts for Iowa and the IFIS stage readings. For the NWM data, each date has it's own tab-delimited file with columns being the time (hrs) and rows being the NHD site. For the IFIS gages, each tab delimited file is for a single site for the period of record.
- Keyword:
- student-friendly
- Discipline:
- Engineering