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Bangime language (Mali) audio files
User Collection
- Creator:
- Heath, Jeffrey
- Description:
- Audio files for Bangime language (genetic isolate, eastern Mali)
5Works -
Appendices for "Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model"
User Collection
- Creator:
- Sifuentes, Christopher J
- Description:
- Appendix1: Differential expression data for zebrafish regeneration and mouse degeneration models. Appendix2: Gene ontology data for zebrafish regeneration and mouse degeneration models. Appendix3: Pathway data for zebrafish regeneration and mouse degeneration models. Appendix4: Differential expression data and genes within linked peaks for mi2004 mutants. Appendix5: Gene ontology data for mi2004 mutants. Appendix6: Pathway data for mi2004 mutants. Appendix7: Linkage plots for mi2004 mutants. Appendix8: Inverse PCR and genome-walking data.
- Keyword:
- Müller glia, zebrafish, regeneration, stem cell, and photoreceptor
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
8Works -
Central Mali documentary videos
User Collection
- Creator:
- Heath, Jeffrey G.
- Description:
- Short documentary videos of practical activities and cultural events of Dogon, Fulbe, Songhay, and Bangande ethnic groups of eastern Central Mali. The videos were byproducts of linguistic research on the local language. They are presented here in three formats: wmv, avi, and either qt or mov. See the "readme" files in each work for a summary of the videos in it. and The footage was shot with various digital cameras. The oldest videos (2010 and one or two from 2011) were edited using iMovie. The later videos were edited using AVS editing software. Several of the 2010 videos, referred to as "compilations," are simple sequences of short clips that combine to illustrate a complex activity such as extracting oil from nuts. The later videos are in more flowing documentary form with overlaid titles in English. In some cases, vocabulary from the relevant native language is included in the titles.
- Keyword:
- Mali and Dogon
- Citation to related publication:
- www.dogonlanguages.org
- Discipline:
- Humanities
7Works -
TCC Engine Collection
User Collection
- Creator:
- Schiffmann, Philipp, Reuss, David L, and Sick, Volker
- Description:
- This Collection is a compilation of data measured in the TCC engine at the University of Michigan, Department of Mechanical Engineering, Quantitative Laser Diagnostics Laboratory. The posted Work Deposits are never changed. However, this collection will be expanded with additional Work Deposits as new experimental data become available. The intent of the collection is to provide a comprehensive experimental data set from the TCC-III engine, for fundamental discovery research on in-cylinder flow and spark-ignited combustion. Also, to enable in-depth support for CFD development and validation. The collection includes data files of in-cylinder flowvelocity and flame imaging, as well as engine and system geometry needed to set up 1-D and CFD simulations. and README for TCCIII_Collection: https://umich.box.com/v/Collection-README-rev20180202
- Keyword:
- internal combustion engine, TCC III engine, optical engine, CFD validation data, motored engine, turbulence in engines, cyclic variability, laser imaging data, particle image velocimetry, PIV, in-cylinder flow, and OH chemiluminescence
- Citation to related publication:
- http://dx.doi.org/10.2516/ogst/2015028 and http://dx.doi.org/10.1177/1468087417720558
4Works -
Transmission of Oral microbiome and Sequencing
User Collection
- Creator:
- Lee, Kyu Han
- Description:
- De-identified participant data from household transmission study of influenza in Nicaragua Oligotype count table and taxonomic classifications
- Keyword:
- Influenza and Microbiome
- Discipline:
- Health Sciences
2Works -
Central Mali geography photos
User Collection
- Creator:
- Heath, Jeffrey G.
- Description:
- This is a collection of photos of villages located primarily in Central Mali. These photos are primarily of Dogon villages, but there are village photos of other nearby ethnicities, including Bangande, Fulbe, Tuareg, Songay, and Bozo.These photos were taken to document the villages Professor Jeffrey Heath worked in and people he worked with while documenting languages throughout the region. For interactive geographical maps involving these villages see: http://dogonlanguages.org/geography.cfm.
- Keyword:
- Jamsay, Bangime, Tamashek, Ampari, Bannkan Tey, Ben Tey, Atlantic Fulfulde, Bunoge, Dogul Dom, Donno So, Mombo, Najamba-Kindige, Nanga, Penange, Tebul Ure, Tengou-Togo, Tiranige, Tommo So, Toro So, Tomo Kan, Toro Tegu, Yanda Dom, Moore, Bozo Jenama, Manding Bambara, Fulankiriya, Humburi Senni, Dogon, Fulbe, Bozo, Songhay, Tuareg, and Bangande
- Citation to related publication:
- www.dogonlanguages.org, http://dogonlanguages.org/geography.cfm, and http://dogonlanguages.org/sources/gpsdogonspreadsheetforllmap
- Discipline:
- Humanities
27Works -
- Creator:
- Yan, Xiang (Jacob), Clarke, Phillipa J., Okullo, Dolorence, Goodspeed, Robert, Data Driven Detroit, Gomez-Lopez, Iris N., and Veinot, Tiffany C
- Description:
- This collection was produced as part of the project, “A ‘Big Data’ Approach to Understanding Neighborhood Effects in Chronic Illness Disparities.” The Investigators for the project are Tiffany Veinot, Veronica Berrocal, Phillipa Clarke, Robert Goodspeed, Daniel Romero, and VG Vinod Vydiswaran from the University of Michigan. The study took place from 2015-2016, with funding from the University of Michigan’s Social Sciences Annual Institute, MCubed, and the Sloan and Moore Foundations. Contact: Tiffany Veinot, MLS, PhD Office: 3443 North Quad Phone: 734/615-8281 Email: tveinot@umich.edu MCubed project page: https://mcubed.umich.edu/projects/%E2%80%9Cbig-data%E2%80%9D-approach-understanding-neighborhood-effects-chronic-illness-disparities
- Keyword:
- Food Environment, Health Status, Employment, Health Care Resources, Neighborhood Safety, Healthcare Utilization, Transportation, Census tract level, Information and Education Environment, Spatial Measures, Detroit, Active Living Resources, Social Environment, Demographics, Community Health, and Housing
- Discipline:
- Social Sciences
6Works -
- Creator:
- Hatch, Nan E.
- Description:
- Craniosynostosis is the premature fusion of cranial bones. The goal of this study was to determine if delivery of recombinant tissue nonspecific alkaline phosphatase (TNAP) could prevent or diminish the severity of craniosynostosis in a C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis or a BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis. Mice were injected with a lentivirus encoding a mineral targeted form of TNAP immediately after birth. Cranial bone fusion as well as cranial bone volume, mineral content and density were assessed by micro computed tomography. Craniofacial shape was measured with calipers., Alkaline phosphatase, alanine amino transferase (ALT) and aspartate amino transferase (AST) activity levels were measured in serum. Neonatal delivery of TNAP diminished craniosynostosis severity from 94% suture obliteration in vehicle treated mice to 67% suture obliteration in treated mice, p<0.02) and the incidence of malocclusion from 82.4% to 34.7% (p<0.03), with no effect on cranial bone in C57BL/6 FGFR2C342Y/+ mice. In contrast, treatment with TNAP improved cranial bone volume (p< 0.01), density (p< 0.01) and mineral content (p< 0.01) but had no effect on craniosynostosis or malocclusion in BALB/c FGFR2C342Y/+ mice. , These results indicate that post-natal recombinant TNAP enzyme therapy diminishes craniosynostosis severity in the C57BL/6 FGFR2C342Y/+ neonatal onset mouse model of Crouzon syndrome, and that effects of exogenous TNAP are genetic background dependent., and Included in this collection is one set of images representing the C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis, and one for the BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis
- Keyword:
- craniofacial, bone, craniosynostosis, FGFR2, TNAP, mouse model, and development
- Discipline:
- Health Sciences
2Works -
R/V Melville Core Retrieval Campaign (MV0811), November 2008
User Collection
- Creator:
- Wang, Yi and Hendy, Ingrid
- Description:
- This collection represents various raw data and analysis of cores extracted during the November 2008 mission of R/V Melville in the Santa Barbara Basin., The core included is the jumbo piston core MV0811-14JC. Core photos, physical properties and magnetic susceptibility from the multisensor track (MST), and the scanning X-ray fluorescence (XRF) data are included in the collection., and Cruise DOI: 10.7284/903459 The research is funded by NSF OCE-1304327.
- Keyword:
- Santa Barbara Basin, Southern California, core photos, physical properties, scanning XRF, MV0811, and Earth Science
- Discipline:
- Science
3Works -
Division of Reptiles and Amphibians
User Collection
- Creator:
- University of Michigan Museum of Zoology
- Description:
- The Division of Reptiles and Amphibians maintains a collection that is worldwide in scope. The research collections contain over 200,000 catalogued lots representing approximately 435,000 individual specimens.
- Discipline:
- Science
0Works -
Estimates of the water balance of the Laurentian Great Lakes using the Large Lakes Statistical Water Balance Model (L2SWBM)
User Collection
- Creator:
- Smith, Joeseph P., Fry, Lauren M., Do, Hong X., and Gronewold, Andrew D.
- Description:
- This collection contains estimates of the water balance of the Laurentian Great Lakes that were produced by the Large Lakes Statistical Water Balance Model (L2SWBM). Each data set has a different configuration and was used as the supplementary for a published peer-reviewed article (see "Citations to related material" section in the metadata of individual data sets). The key variables that were estimated by the L2SWBM are (1) over-lake precipitation, (2) over-lake evaporation, (3) lateral runoff, (4) connecting-channel outflows, (5) diversions, and (6) predictive changes in lake storage. and Contact: Andrew Gronewold Office: 4040 Dana Phone: (734) 764-6286 Email: drewgron@umich.edu
- Keyword:
- Great Lakes water levels, statistical inference, water balance, data assimilation, Great Lakes, Laurentian, Machine learning, Bayesian, and Network
- Citation to related publication:
- Smith, J. P., & Gronewold, A. D. (2017). Development and analysis of a Bayesian water balance model for large lake systems. arXiv preprint arXiv:1710.10161., Gronewold, A. D., Smith, J. P., Read, L., & Crooks, J. L. (2020). Reconciling the water balance of large lake systems. Advances in Water Resources, 103505., and Do, H.X., Smith, J., Fry, L.M., and Gronewold, A.D., Seventy-year long record of monthly water balance estimates for Earth’s largest lake system (under revision)
- Discipline:
- Engineering and Science
5Works -
- Creator:
- Wang, Yi and Hendy, Ingrid
- Description:
- This collection represents various raw data and analysis of cores extracted during the January 2009 mission of the research vessel Sproul in the Santa Barbara Basin., Cores included: box core SPR0901-04BC, box core SPR0901-unnamed, and Kasten core SPR0901-03KC. Core photos, physical properties and magnetic susceptibility from the multisensor track (MST), and the scanning X-ray fluorescence (XRF) data are included in the collection., and Cruise DOI: 10.7284/901089 This research is funded by NSF-OCE 0752093.
- Keyword:
- Santa Barbara Basin, Southern California, core photos, physical properties, scanning XRF, SPR0901, and Earth Science
- Discipline:
- Science
8Works -
Preterm Birth
User Collection- Creator:
- Betsy Foxman
- Description:
- This collection has been retired as of Sept 28. 2020 and replaced with the "Preterm Birth" work listed below.
- Discipline:
- Health Sciences
1Works -
University of Michigan Museum of Zoology
User Collection
- Creator:
- University of Michigan Museum of Zoology
- Description:
- The University of Michigan Museum of Zoology (UMMZ) is the center for the study of animal diversity on campus, focusing on the evolutionary origins of the planet’s animal species, the genetic information they contain and the communities and ecosystems they help form. Now an integral part of the Department of Ecology and Evolutionary Biology (EEB), the UMMZ houses world-class collections, containing more than 15 million specimens, span almost 200 years of regional and global biodiversity studies and that support a multi-faceted Departmental research and teaching program.
- Discipline:
- Science
2Sub-collections0Works -
Division of Mammals
User Collection
- Creator:
- University of Michigan Museum of Zoology
- Description:
- The Division of Mammals at the Museum of Zoology was established in 1837, and has grown steadily to its current size, with over 150,000 specimens. An important feature of the mammal collection at the Museum of Zoology is our emphasis on non-traditional specimens.
- Discipline:
- Science
2Works -
- Creator:
- Skerlos, Steven J.
- Description:
- Supporting Information for research article "Life cycle comparison of environmental emissions from three disposal options for unused pharmaceutical". This spreadsheet provides the calculations and values used for this study; please refer to the manuscript and supporting information (as text) available at http://dx.doi.org/10.1021/es203987b for details about how to use this spreadsheet. We use life cycle assessment methodology to compare three disposal options for unused pharmaceuticals: (i) incineration after take-back to a pharmacy, (ii) wastewater treatment after toilet disposal, and (iii) landfilling or incineration after trash disposal. For each option, emissions of active pharmaceutical ingredients to the environment (API emissions) are estimated along with nine other types of emissions to air and water (non-API emissions). Under a scenario with 50% take-back to a pharmacy and 50% trash disposal, current API emissions are expected to be reduced by 93%. This is within 6% of a 100% trash disposal scenario, which achieves an 88% reduction. The 50% take-back scenario achieves a modest reduction in API emissions over a 100% trash scenario while increasing most non-API emissions by over 300%. If the 50% of unused pharmaceuticals not taken-back are toileted instead of trashed, all emissions increase relative to 100% trash disposal. Evidence suggests that 50% participation in take-back programs could be an upper bound. As a result, we recommend trash disposal for unused pharmaceuticals. A 100% trash disposal program would have similar API emissions to a take-back program with 50% participation, while also having significantly lower non-API emissions, lower financial costs, higher convenience, and higher compliance rates.
- Citation to related publication:
- Cook, Sherri M., Bryan J. VanDuinen, Nancy G. Love, and Steven J. Skerlos. “Life Cycle Comparison of Environmental Emissions from Three Disposal Options for Unused Pharmaceuticals.” Environmental Science & Technology 46, no. 10 (May 15, 2012): 5535–41. https://doi.org/10.1021/es203987b
- Discipline:
- Engineering
- Title:
- Unused Pharmaceutical Disposal Model
-
- Creator:
- Dr. Francis C. Evans
- Description:
- The Evans Old Field Plant Database contains FileMaker and Excel files of data collected by Dr. Francis C. Evans during a 50-year study on successional change on Evans Old Field on the Edwin S. George Reserve. Data include plant phenology, location, and abundances observed from 1948 to 1997.
- Discipline:
- Science
- Title:
- Evans Old Field Plant Database, 1948-1997
-
- Creator:
- Keener, Alix
- Description:
- As discussion and debates on the digital humanities continue among scholars, so too does discussion about how academic libraries can and should support this scholarship. Through interviews with digital humanities scholars and academic librarians within the Center for Institutional Cooperation, this study aims to explore some points of common perspective and underlying tensions in research relationships. Qualitative interviews revealed that, while both groups are enthusiastic about the future of faculty-librarian collaboration on digital scholarship, there remain certain tensions about the role of the library and the librarian. Scholars appreciate the specialized expertise of librarians, especially in metadata and special collections, but they can take a more active stance in utilizing current library resources or vocalizing their needs for other resources. This expertise and these services can be leveraged to make the library an active and equal partner in research. Additionally, libraries should address internal issues, such as training and re-skilling librarians as necessary; better-coordinated outreach to academic departments is also needed.
- Citation to related publication:
- Alix Keener, "The Arrival Fallacy: Collaborative Research Relationships in the Digital Humanities," Digital Humanities Quarterly vol. 9 no. 2 (2015), http://www.digitalhumanities.org/dhq/vol/9/2/000213/000213.html
- Discipline:
- Humanities
- Title:
- The Arrival Fallacy: Collaborative Research Relationships in the Digital Humanities
-
- Creator:
- University of Michigan Transportation Research Institute, Rupp, Jonathan D., Klein, Katelyn F., and Reed, Matthew P.
- Description:
- The files include an Excel file with the x-, y-, and z- coordinates that make up the nodal coordinates for a surface model of small (5th percentle) female pelvis geometry, the finite element model (.k file) that represents the nodal coordinates, and two surface files that represent the geometry (.obj and .ply).
- Citation to related publication:
- Katelyn F. Klein, Matthew P. Reed, and Jonathan D. Rupp. "Development of Geometric Specifications for the Pelvis of a Small Female Anthropomorphic Test Device." IRCOBI Conference 2016, IRC-16-79. http://www.ircobi.org/wordpress/downloads/irc16/pdf-files/79.pdf
- Discipline:
- Engineering
- Title:
- Small Female Pelvis Geometry Model
-
- Creator:
- Carson IV, William F.
- Description:
- Raw data and analysis files for the figures corresponding to the manuscript submission entitled "CCL2 enhances macrophage inflammatory responses via miR-9 mediated downregulation of the ERK1/2 phosphatase Dusp6"
- Discipline:
- Science
- Title:
- Raw Data - CCL2 enhances macrophage inflammatory responses via miR-9 mediated downregulation of the ERK1/2 phosphatase Dusp6
-
- Creator:
- Ozturk, Dogacan Su
- Description:
- The rapid increases in solar wind dynamic pressure, termed sudden impulses (SIs), compress Earth’s dayside magnetosphere and strongly perturb the coupled Magnetosphere-Ionosphere (M-I) system. The compression of the dayside magnetosphere launches magnetohydrodynamic (MHD) waves, which propagate down to the ionosphere, changing the Auroral Field Aligned Currents (FACs), and into nightside magnetosphere. The global response to the compression front sweeping through the coupled system is not yet fully understood due to the sparseness of the measurements, especially those with the necessary time resolution to resolve the propagating disturbances. That’s why a study including modeling is necessary. On 15 August 2015 at 7.44 UT, Advanced Composition Explorer measured a sudden increase in the solar wind dynamic pressure from 1.11 nPa to 2.55 nPa as shown in Figure-1. We use the magnetospheric spacecraft in the equatorial magnetosphere to identify the signatures of magnetosphere response to this SI event and examine the interaction of the propagating disturbances with the M-I system. With the increased time resolution of Active Magnetosphere and Polar Electrodynamics Response Experiment (AMPERE), the FAC pattern and intensity change due to SI can also be studied in more depth. We further use measurements from ground based magnetometer stations to increase our tracking capability for the disturbances in the ionosphere and to improve our understanding of their propagation characteristics. This is the first step in a comprehensive multi-point observation and a global magnetohydrodynamic simulation based investigation of the response of the coupled M-I system to sudden impulses.
- Citation to related publication:
- Ozturk, Doga & Zou, Shasha & Slavin, James. (2016). The Response of the Coupled Magnetosphere-Ionosphere System to the 15 August 2015 Solar Wind Dynamic Pressure Enhancement. https://www.researchgate.net/publication/300020219
- Discipline:
- Science
- Title:
- The Observation and Simulation Dataset for The Response of the Coupled Magnetosphere-Ionosphere System to the 15 August 2015 Solar Wind Dynamic Pressure Enhancement
-
- Creator:
- Stoev, Stilian and Hu, Weifeng
- Description:
- Many data sets come as point patterns of the form (longitude, latitude, time, magnitude). The examples of data sets in this format includes tornado events, origins/destination of internet flows, earthquakes, terrorist attacks and etc. It is difficult to visualize the data with simple plotting. This research project studies and implements non-parametric kernel smoothing in Python as a way of visualizing the intensity of point patterns in space and time. A two-dimensional grid M with size mx, my is used to store the calculation result for the kernel smoothing of each grid points. The heat-map in Python then uses the grid to plot the resulting images on a map where the resolution is determined by mx and my. The resulting images also depend on a spatial and a temporal smoothing parameters, which control the resolution (smoothness) of the figure. The Python code is applied to visualize over 56,000 tornado landings in the continental U.S. from the period 1950 - 2014. The magnitudes of the tornado are based on Fujita scale.
- Citation to related publication:
- Hu, Weifeng. “Kernel-based Visualization of Point Patterns in Python with Application to Tornado Landing Data.” (2016). At https://www.semanticscholar.org/paper/Kernel-based-Visualization-of-Point-Patterns-in-to-Hu/0de06a6db39da54fe28f8d0cb47c0d3270f2f831
- Discipline:
- Engineering and Science
- Title:
- Statistics and Visualization of Point-Patterns
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- transcription/translation to appear
- Discipline:
- Humanities
- Title:
- Bangime audio 2015 text 01 Condolences
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- translation/transcription to appear
- Discipline:
- Humanities
- Title:
- Bangime audio 2015 text 02 Chief and Pauper
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- transcription/translation to appear.
- Discipline:
- Humanities
- Title:
- Bangime audio 2015 text 03 politics
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- translation/translation to appear.
- Discipline:
- Humanities
- Title:
- Bangime audio 2015 text 04 Hunters part 1
-
- Creator:
- Heath, Jeffrey and Dicko, Adama
- Description:
- transcriptions and translation to appear; second of two parts of this text
- Discipline:
- Humanities
- Title:
- Bangime audio 2015 text 04 Hunters part 2
-
- Creator:
- Grosh, Karl and Li, Yizeng
- Description:
- In a sensitive cochlea, the basilar membrane response to transient excitation of any kind--normal acoustic or artificial intracochlear excitation--consists of not only a primary impulse but also a coda of delayed secondary responses with varying amplitudes but similar spectral content around the characteristic frequency of the measurement location. The coda, sometimes referred to as echoes or ringing, has been described as a form of local, short term memory which may influence the ability of the auditory system to detect gaps in an acoustic stimulus such as speech. Depending on the individual cochlea, the temporal gap between the primary impulse and the following coda ranges from once to thrice the group delay of the primary impulse (the group delay of the primary impulse is on the order of a few hundred microseconds). The coda is physiologically vulnerable, disappearing when the cochlea is compromised even slightly. The multicomponent sensitive response is not yet completely understood. We use a physiologically-based, mathematical model to investigate (i) the generation of the primary impulse response and the dependence of the group delay on the various stimulation methods, (ii) the effect of spatial perturbations in the properties of mechanically sensitive ion channels on the generation and separation of delayed secondary responses. The model suggests that the presence of the secondary responses depends on the wavenumber content of a perturbation and the activity level of the cochlea. In addition, the model shows that the varying temporal gaps between adjacent coda seen in experiments depend on the individual profiles of perturbations. Implications for non-invasive cochlear diagnosis are also discussed.
- Citation to related publication:
- Li, Yizeng, and Karl Grosh. “The Coda of the Transient Response in a Sensitive Cochlea: A Computational Modeling Study.” PLOS Computational Biology 12, no. 7 (July 5, 2016): e1005015. https://doi.org/10.1371/journal.pcbi.1005015
- Discipline:
- Health Sciences and Engineering
- Title:
- Data for "The Coda of the Transient Response in a Sensitive Cochlea"
-
- Creator:
- Atwell, Jon
- Description:
- The data file is json formatted and all fields are named descriptively. The code is written in Python 2.7 and is heavily commented.
- Keyword:
- inequality and coadaptation
- Citation to related publication:
- Atwell J, Savit R (2016) The Emergence of Groups and Inequality through Co-Adaptation. PLoS ONE 11(6): e0158144. https://doi.org/10.1371/journal.pone.0158144
- Discipline:
- Science and Social Sciences
- Title:
- Code and Results for "The Emergence of Groups and Inequality Through Co-Adaptation"
-
- Creator:
- Ottaviani, Jim
- Description:
- This random sample of OA articles comes from Deep Blue <deepblue.lib.umich.edu/documents>, the University of Michigan’s institutional repository service. Each OA article has the following characteristics: Prior to a known date (ranging from 2006 to the 2013) these articles—the final published version—were only available by subscription. After that date, they became freely available via Deep Blue. Meanwhile, other articles from the same journal issue as the now-OA article continued to only be available to subscribers. None of the OA articles were self-selected; authors did not choose to deposit the articles in question in Deep Blue, since we made them open via blanket licensing agreements between the publishers and the library.
- Keyword:
- Open access publishing, Scientific publishing, Citation analysis, and Institutional repositories
- Citation to related publication:
- Ottaviani J (2016) The Post-Embargo Open Access Citation Advantage: It Exists (Probably), It’s Modest (Usually), and the Rich Get Richer (of Course). PLoS ONE 11(8): e0159614. https://doi.org/10.1371/journal.pone.0159614
- Discipline:
- Social Sciences
- Title:
- Citations to Open and Closed Access Articles: Treatment and Control Group Data
-
- Creator:
- Meurer, William J., Meka, Arjun, and Porath, Jon
- Description:
- Introduction: Diagnostic testing is common in the emergency department. The value of some testing is questionable. The purpose of this study was to assess how varying levels of benefit, risk, and costs influenced an individual’s desire to have diagnostic testing. Methods: A survey through Amazon Mechanical Turk presented hypothetical clinical situations: low risk chest pain and minor traumatic brain injury. Each scenario included three given variables (benefit, risk, and cost), that was independently randomly varied over four possible values (0.1%, 1%, 5%, 10% for benefit and risk and $0, $100, $500, and $1000 for the individual’s personal cost for receiving the test). Benefit was defined as the probability of finding the target disease (traumatic intracranial hemorrhage or acute coronary syndrome). Results: A total of 1000 unique respondents completed the survey. Increasing benefit from 0.1% to 10%, the percent of respondents who accepted a diagnostic test went from 28.4% to 53.1%. [OR: 3.42 (2.57-4.54)] As risk increased from 0.1% to 10%, this number decreased from 52.5% to 28.5%. [OR: 0.33 (0.25-0.44)] Increasing cost from $0 to $1000 had the greatest change of those accepting the test from 61.1% to 21.4%, respectively. [OR: 0.15 (0.11-0.2)] Conclusions: The desire for testing was strongly sensitive to the benefits, risks and costs. Many participants wanted a test when there was no added cost, regardless of benefit or risk levels, but far fewer elected to receive the test as cost increased incrementally. This suggests that out of pocket costs may deter patients from undergoing diagnostic testing with low potential benefit.
- Discipline:
- Health Sciences
- Title:
- mTURK diagnostic testing dataset May 2015
-
- Creator:
- Carson, William F. IV
- Description:
- Data files pertaining to the manuscript entitled: "THE STAT4/MLL1 EPIGENETIC AXIS REGULATES THE ANTIMICROBIAL FUNCTIONS OF MURINE MACROPHAGES"
- Discipline:
- Health Sciences
- Title:
- Data files for manuscript: "THE STAT4/MLL1 EPIGENETIC AXIS REGULATES THE ANTIMICROBIAL FUNCTIONS OF MURINE MACROPHAGES"
-
- Creator:
- Carson, William F., IV
- Description:
- Transcriptional accessibility of chromatin is central to guiding CD4+ T cell function through regulation of lineage specific gene expression. Myst1 is a histone acetyltransferase responsible for acetylation of the protein tail of histone 4 at lysine residue 16 (H416ac), resulting in increased transcriptional accessibility and activation of gene transcription. Previous studies have described a role for Myst1 in governing lymphocyte development in the thymus, however the role of Myst1 and H4K16ac in guiding activation of peripheral CD4+ T cells has not been studied. Activation of human and murine CD4+ T cells resulted in upregulation of Myst1 expression, and deletion of Myst1 resulted in changes in proliferative responses to both polyclonal stimulus and exogenous cytokines. Myst1-deficient T cells also exhibited modulations in lineage commitment, with decreased function in TH1/TH2 skewing conditions and increased function in response to TH17-promoting conditions. Regulation of Myst1 function in CD4+ T cells appears governed at least in part by STAT5, as Myst1 expression is regulated by STAT5 expression and DNA binding, and modulations in H4K16ac in Myst1-deficient CD4+ T cells is observable at sites in the promoter regions of lineage specific genes following skewing to the TH1 or TH2 lineage in vitro. Taken together, these results indicate an important role for the STAT5-Myst1 epigenetic axis in governing the activation and effector function of CD4+ T cells.
- Discipline:
- Science
- Title:
- Data files for manuscript: "Regulation of STAT5-directed CD4+ T cell lineage commitment by the histone acetyltransferase Myst1"
-
- Creator:
- Meurer, William
- Description:
- Dataset for analysis in SPSS
- Discipline:
- Health Sciences
- Title:
- Optimizing Communication of Emergency Response Adaptive Randomization Clinical Trials to Potential Participants
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Differential expression data from zebrafish regeneration and mouse degeneration models.
- Keyword:
- regeneration, stem cells, photoreceptor, zebrafish, and Müller glia
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix1
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Gene ontology data from zebrafish regeneration and mouse degeneration models.
- Keyword:
- Müller glia, stem cells, photoreceptors, zebrafish, and regeneration
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix2
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Pathway data for zebrafish regeneration and mouse degeneration models.
- Keyword:
- regeneration, stem cells, photoreceptor, zebrafish, and Müller glia
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix3
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Differential expression data and genes in linked peaks in mi2004 mutants.
- Keyword:
- Müller glia, stem cells, photoreceptor, zebrafish, and regeneration
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix4
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Gene ontology data from mi2004 mutants
- Keyword:
- Müller glia, stem cells, photoreceptor, zebrafish, and regeneration
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix5
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Pathway data from mi2004 mutants.
- Keyword:
- Müller glia, stem cells, photoreceptor, zebrafish, and regeneration
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix6
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Linkage plots and data for mi2004 mutants.
- Keyword:
- Müller glia, stem cells, photoreceptor, zebrafish, and regeneration
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix7
-
- Creator:
- Sifuentes, Christopher J
- Description:
- Inverse PCR and genome-walking data.
- Keyword:
- regeneration, stem cells, photoreceptor, zebrafish, and Müller glia
- Citation to related publication:
- Sifuentes, C. J. (2016). Regulation of Müller glial stem cell properties: Insights from a zebrafish model (Doctoral dissertation). Retrieved from http://hdl.handle.net/2027.42/135939
- Discipline:
- Science
- Title:
- Regulation of Müller Stem Cell Properties: Insights From a Zebrafish Model, Appendix8
-
- Creator:
- Data-Driven Detroit, Goodspeed, Robert, Reference U.S.A., Veinot, Tiffany C., Yan, Xiang, State of Michigan Department of Elections, and Okullo, Dolorence
- Description:
- The Social Environment refers to characteristics of the people and institutions in a census tract, including: 1) Religious organizations (churches and places of worship); and 2) Voter turnout for the 2012 Presidential Election. Coverage for all data: 10-county Detroit-Warren-Ann Arbor Combined Statistical Area.
- Keyword:
- Voter Turnout, Religious Institutions, Spatial Measures, and Census Tract Level
- Discipline:
- Health Sciences and Social Sciences
- Title:
- Neighborhood Effects: Social Environment
-
- Creator:
- Reference USA, City of Detroit, ESRI, Data Driven Detroit, and Veinot, Tiffany C.
- Description:
- Active living resources include spaces and organizations that facilitate physical activity, including 1) park land, 2) recreation areas (including parks, golf courses, amusement parks, beaches and other recreational landmarks); and 3) recreation centers (including gyms, dancing instruction, martial arts instruction, bowling centers, yoga instruction, sports clubs, fitness programs, golf course, pilates instruction, personal trainers, swimming pools, skating rinks, etc.) Coverage for all data: 10-county Detroit-Warren-Ann Arbor Combined Statistical Area.
- Keyword:
- Recreation Areas, Park Land, Census tract level, Metropolitan Detroit, Spatial Measures, Recreation Centers, and Michigan
- Discipline:
- Health Sciences, Social Sciences, and Other
- Title:
- Neighborhood Effects Active Living Resources
-
- Creator:
- Wellman, Michael P.
- Description:
- For each game: - file in JSON format with raw payoff data - text file with game-theoretic analysis results
- Discipline:
- Social Sciences
- Title:
- Data Supplement: Self-Confirming Price-Prediction Strategies for Simultaneous One-Shot Auctions
-
- Creator:
- Shtull-Leber, Eytan
- Description:
- We present the SAS code used to conduct the data manipulation and analysis for our research on pre-hospital midazolam use before and after RAMPART.
- Keyword:
- emergency medical services, knowledge translation, status epilepticus, benzodiazepines, midazolam, EMS, and Seizure
- Citation to related publication:
- Shtull-Leber E, Silbergleit R, Meurer WJ (2017) Pre-hospital midazolam for benzodiazepine-treated seizures before and after the Rapid Anticonvulsant Medication Prior to Arrival Trial: A national observational cohort study. PLoS ONE 12(3): e0173539. https://doi.org/10.1371/journal.pone.0173539
- Discipline:
- Health Sciences
- Title:
- Pre-Hospital Midazolam for Treatment of Status Epilepticus Before and After the Rapid Anticonvulsant Medication Prior to Arrival Trial (RAMPART): A National Observational Cohort Study
-
- Creator:
- Tsai, Grace and Kuipers, Benjamin
- Description:
- ******Michigan Indoor Corridor 2012 Dataset****** This dataset is made available for research purpose only. Please contact Grace Tsai( gstsai@umich.edu) for any questions or comments. This dataset was used to produce the results in our IROS 2012 paper. If you use the data, please cite the following reference in your publications related to this work: Grace Tsai and Benjamin Kuipers Dynamic Visual Understanding of the Local Environment for an Indoor Navigating Robot International Conference on Intelligent Robots and Systems (IROS'12) October 2012 The dataset contains 4 video sequences acquired with camera mounted on a wheeled vehicle. The camera was set-up so that there was zero tilt and roll angle with respect to the ground. The camera has a fixed height (0.47 m) with the ground throughout the video. The intrinsic parameters of the cameras are: Focal length fc = [ 1389.182714 1394.598277 ] Principal point cc = [ 672.605430 387.235803 ] The distortion of the camera has been corrected. For each video sequences, an estimated camera pose in each frame of the video is provided in the file pose.txt. Each line in the file looks like: <frame index> <x (pose)> <y (pose)> <theta (pose)> Note the camera poses provided here are estimated by using an occupancy grid mapping algorithm with a laser range finder to obtain the robot pose. The dataset provides a ground truth labeling for all the pixels every 10 frames for each video. The labels of each frame is stored as a 2D matrix in a .mat file. The filename of each .mat file corresponds to the image frame. The labels can be interpreted as followed: -2 -> ceiling plane -1 -> ground plane >0 -> walls The labels of the walls are illustrated in a .pdf figure. Note the figure is only a illustration graph, not an actual floor plan.
- Keyword:
- Robotics and Computer vision
- Citation to related publication:
- Grace Tsai and Benjamin Kuipers "Dynamic Visual Understanding of the Local Environment for an Indoor Navigating Robot" International Conference on Intelligent Robots and Systems (IROS'12) October 2012 https://doi.org/10.1109/IROS.2012.6385735
- Discipline:
- Engineering
- Title:
- Michigan Indoor Corridor Dataset
-
- Creator:
- Figueroa, C. Alberto
- Description:
- Magnetic resonance angiography (MRA) of the aorta of a 30 yo healthy volunteer, segmented and discretized using the software CRIMSON ( www.crimson.software). Additionally, models corresponding to virtually-aged aortic geometries at ages: 40, 60, and 75.
- Keyword:
- Pulse Wave Velocity, Blood flow modeling, Hypertension, and Aging
- Citation to related publication:
- Cuomo F, Roccabianca S, Dillon-Murphy D, Xiao N, Humphrey JD, Figueroa CA (2017) Effects of age-associated regional changes in aortic stiffness on human hemodynamics revealed by computational modeling. PLoS ONE 12(3): e0173177. https://doi.org/10.1371/journal.pone.0173177
- Discipline:
- Engineering
- Title:
- Effects of Age-Associated Regional Changes in Aortic Stiffness on Human Hemodynamics Revealed by Computational Modeling
-
- Creator:
- Yang, Bing and Wittkopp, Patricia J
- Description:
- Datafiles and code described in accompanying MS, currently in review
- Keyword:
- regulatory network evolution
- Discipline:
- Science
- Title:
- Data and code files for Bing and Wittkopp MBE submission 11/22/16
-
- Creator:
- Title, Pascal O. and Bemmels, Jordan B.
- Description:
- The ENVIREM dataset v1.0 is a set of 16 climatic and 2 topographic variables that can be used in modeling species' distributions. The strengths of this dataset include their close ties to ecological processes, and their availability at a global scale, at several spatial resolutions, and for several time periods. The underlying temperature and precipitation data that went into their construction comes from the WorldClim dataset ( www.worldclim.org), and the solar radiation data comes from the Consortium for Spatial Information ( www.cgiar-csi.org). The data are compatible with and expand the set of variables from WorldClim v1.4 ( www.worldclim.org). For more information, please visit the project website: envirem.github.io
- Keyword:
- raster, species distribution modeling, and bioclimatic
- Citation to related publication:
- Title, P. O. and Bemmels, J. B. (2018), ENVIREM: an expanded set of bioclimatic and topographic variables increases flexibility and improves performance of ecological niche modeling. Ecography, 41: 291-307. http://doi.org/10.1111/ecog.02880
- Discipline:
- Science
- Title:
- ENVIREM: ENVIronmental Rasters for Ecological Modeling version 1.0