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- Creator:
- Sugrue, Dennis P.
- Description:
- Our work seeks to better understand the financial risks to corporate operations as a basis for exploring alternative public-private investment strategies. We applied network analysis to model financial relationships within this sector and its connectedness to primary commodities transported on the Great Lakes. The financial network maps were used to quantitatively analyze the industry risk exposure using corporate financial metrics and to query the financial interdependencies of companies relative to the Great Lakes waterway. Results demonstrate that inventory turnover ratio is a robust proxy to quantify weighted financial risks of water dependency across the entire supply chain network. All data was manually collected from the Bloomberg Terminal and FactSet which are licensed by the University of Michigan. The SPLC module in the Terminal restricts data download and information must be captured manually. All data was collected from September-November 2018.
- Keyword:
- Iron Ore, Supply Chain, Bloomberg Terminal, and Great Lakes
- Citation to related publication:
- Sugrue, Dennis, Abigail Martin, and Peter Adriaens. (under review). “Financial Network Analysis to Inform Infrastructure Investment: Great Lakes Waterway and the Steel Supply Chain.” Journal of Infrastructure Systems, American Society of Civil Engineers.
- Discipline:
- Engineering
-
- Creator:
- Huang, Cheng MI
- Description:
- A 2D planar representation of a generic laboratory-scale combustor is established to assess the capabilities of ROMs for representing realistic combustion flowfields. The purpose of this dataset is to provide a testbed to build reduced model for relevant challenging reacting flow problems using different methods. The dataset was generated under the Air Force Center of Excellence on Multi-Fidelity Modeling of Rocket Combustion Dynamics and the goal of the center is to advance the state-of-the-art in Reduced Order Models (ROMs) and enable efficient prediction of instabilities in liquid fueled rocket combustion systems., Instrument and/or Software specifications: - recommendation: Matlab and Tecplot, 1. Data_150000to159999.tar: the unsteady flow field data from time step 150000 to 159999 (time increment, dt, between each time step is 1E-7 sec). - Data_160000to169999.tar: the unsteady flow field data from time step 160000 to 169999 (time increment, dt, between each time step is 1E-7 sec). 2. Data_170000to179999.tar: the unsteady flow field data from time step 170000 to 179999 (time increment, dt, between each time step is 1E-7 sec). 3. grid.dat: the topology of the CFD mesh used to generate this data (can be directly loaded in Tecplot). 4. the file "sample_code.zip" contains the sample Matlab scripts to load and output the .dat files to help the researchers to get started. To run the script, the software Matlab is required and the researchers can simply run sampleIO.m script in Matlab to test the code. , and Detailed documentation of how the data is generated can be found in: https://afcoe.engin.umich.edu/benchmark-data
- Citation to related publication:
- Huang, C., Duraisamy, K., and Merkle, C.L., Investigations and Improvement of Robustness of Reduced-Order Models of Reacting Flow, AIAA Journal, 2019., Swischuk, R., Kramer, B., Huang, C., and Willcox, K., Learning Physics-Based Reduced-Order Models for a Single-Injector Combustion Process , AIAA Journal, 2020., and Harvazinski, M.E., Huang, C., Sankaran, V., Feldman, T.W., Anderson, W.E., Merkle, C.L., and Talley, D.G., Coupling between hydrodynamics, acoustics, and heat release in a self-excited unstable combustor, Physics of Fluids, 2015.
- Discipline:
- Engineering
-
- Creator:
- Gorchov Negron, Alan M., Kort, Eric A., Conley, Stephen A., and Smith, Mackenzie L.
- Description:
- This data-set contains data used in the publication "Airborne Assessment of Methane Emissions from Offshore Platforms in the U.S. Gulf of Mexico" by Gorchov Negron et al. (2020). There are 46,032 rows and 45 columns in the data. and The aircraft sampled offshore facilities with two unique sampling strategies: facility-level samples and regional box samples. Gorchov Negron et al. used facility-level samples to calculate facility-level fluxes and regional box samples, in conjunction with vertical profiles, to calculate regional-level fluxes. Meteorological parameters in the data were evaluated to discern when assumptions for each method were met. The facility-level fluxes were used to generate a facility-level aerial measurement-based inventory that was scaled up for comparison with regional-level fluxes.
- Keyword:
- Methane Emissions, Offshore Oil and Gas Platforms, Airborne Measurements, Greenhouse Gas Mitigation, and Gulf of Mexico
- Citation to related publication:
- Alan M. Gorchov Negron, Eric A. Kort, Stephen A. Conley, Mackenzie L. Smith. "Airborne Assessment of Methane Emissions from Offshore Platforms in the U.S. Gulf of Mexico". Environ. Sci. Technol. 2020. http://dx.doi.org/10.1021/acs.est.0c00179
- Discipline:
- Science
-
- Creator:
- Arbic, Brian K. and Luecke, Conrad A.
- Description:
- The locations ("locs") files in this directory contain indices pointing to the locations in the CMA superset datafiles that were used in the Luecke et al. 2020 comparison of HYCOM and MITgcm model output to CMA observations.
- Keyword:
- Physical oceanography, Numerical modeling, Ocean modeling, Model/data comparisons, and Internal gravity waves
- Citation to related publication:
- Luecke, C. A., Arbic, B. K., Richman, J. G., Shriver, J. F., Alford, M. H., Ansong, J. K., Bassette, S. L., Buijsman, M. C., Menemenlis, D., Scott, R. B., Timko, P. G., Voet, G., Wallcraft, A. J., & Zamudio, L. (2020). Statistical Comparisons of Temperature Variance and Kinetic Energy in Global Ocean Models and Observations: Results From Mesoscale to Internal Wave Frequencies. Journal of Geophysical Research: Oceans, 125(5), e2019JC015306. https://doi.org/10.1029/2019JC015306
- Discipline:
- Science
-
- Creator:
- Yang, Emily G, Kort, Eric A, Wu, Dien, Lin, John C, Oda, Tomohiro, Ye, Xinxin, and Lauvaux, Thomas
- Description:
- This data set supports a study that seeks to evaluate global fossil fuel CO2 emissions inventory representations of CO2 emissions of five cities in the Middle East, and assess the ability of satellite observations to inform this evaluation. Improved observational understanding of urban CO2 emissions, a large and dynamic global source of fossil CO2, can provide essential insights for both carbon cycle science and mitigation decision making. In this study we compare three distinct global CO2 emissions inventory representations of urban CO2 emissions for five Middle Eastern cities (Riyadh, Mecca, Tabuk, Jeddah, and Baghdad) and use independent satellite observations from the Orbiting Carbon Observatory-2 (OCO-2) satellite to evaluate the inventory representations of afternoon emissions. We use the column version of the Stochastic Time-Inverted Lagrangian Transport (X-STILT) model to account for atmospheric transport and link emissions to observations. We compare XCO2 simulations with observations to determine optimum inventory scaling factors. Applying these factors, we find that the average summed emissions for all five cities are 100 MtC/y (50-151, 90% CI), which is 2.0 (1.0, 3.0) times the average prior inventory magnitudes. The total adjustment of the emissions of these cities comes out to ~7% (0%, 14%) of total Middle Eastern emissions (~700 MtC/y). We find our results to be insensitive to the prior spatial distributions in inventories of the cities’ emissions, facilitating robust quantitative assessments of urban emission magnitudes without accurate high-resolution gridded inventories. and There are three files included in this data set, and all data are in tab-delimited form. The first file, xco2_lat.zip, contains 26 separate text files, each named by the city and date of the corresponding OCO-2 overpass. Each of these 26 files includes overpass-specific data, with modeled and observed XCO2 values binned by 0.1 degree of latitude. The file overpass_scaling_factors.txt provides the scaling factors for each overpass used in this study. The file city_estimates.txt provides the scaled emissions estimates for each city (or sum of cities) as well as the lower and upper bounds of the 90% confidence intervals, for each inventory.
- Keyword:
- greenhouse gases, carbon dioxide, urban, cities, satellite, remote sensing, Lagrangian modeling, emissions inventories, carbon cycle, and climate
- Citation to related publication:
- Yang, E. G., Kort, E. A., Wu, D., Lin, J. C., Oda, T., Ye, X., & Lauvaux, T. (2020). Using space‐based observations and Lagrangian modeling to evaluate urban carbon dioxide emissions in the Middle East. Journal of Geophysical Research: Atmospheres, 125, e2019JD031922. https://doi.org/10.1029/2019JD031922
- Discipline:
- Science
-
- Creator:
- Yue, Min, Kim, Jae Hyun, Evans, Charles R. , Kachman, Maureen, Erb-Downward, John R., D’Souza, Jennifer , Foxman, Betsy, Adar, Sara D. , Curtis, Jeffrey L. , and Stringer, Kathleen A.
- Description:
- This was a small descriptive study to determine whether short chain fatty acids (SCFAs) are detectable in water. It is part of a larger study that assessed the utility of exhaled breath condensate (EBC) as a biofluid for microbiome assays.
- Keyword:
- microbiome, short chain fatty acids, pulmonary, bronchoalveolar lavage fluid, exhaled breath condensate, and water
- Citation to related publication:
- Yue, M., Kim, J. H., Evans, C. R., Kachman, M., Erb-Downward, J. R., D’Souza, J., Foxman, B., Adar, S. D., Curtis, J. L., & Stringer, K. A. (2020). Measurement of Short-Chain Fatty Acids in Respiratory Samples: Keep Your Assay above the Water Line. American Journal of Respiratory and Critical Care Medicine, 202(4), 610–612. https://doi.org/10.1164/rccm.201909-1840LE
- Discipline:
- Science
-
- Creator:
- Lee, Dahee, Panicker, Veena, and Landis-Lewis, Zach
- Description:
- We use the term “performance summary display” (PSD) to mean a kind of visualization that relates performance levels to other types of information. In the context of healthcare organizations, PSDs are intended to be communicated to a healthcare professional, team, or organization. and Displays were identified, classified, and elements counted and coded. The performance summary display ontology provides a set of descriptions of components of displays that have been used to annotate performance feedback visualizations.
- Keyword:
- Performance
- Citation to related publication:
- Lee, D., Panicker, V., Gross, C., Zhang, J., & Landis-Lewis, Z. (2020). What was visualized? A method for describing content of performance summary displays in feedback interventions. BMC medical research methodology, 20(1), 90. https://doi.org/10.1186/s12874-020-00951-x
- Discipline:
- Health Sciences and Science
-
- Creator:
- Moser, Carol, Schoenebeck, Sarita , and Resnick, Paul
- Description:
- These data, survey instruments (including informed consent) and analysis scripts come from Carol Moser's dissertation titled, Impulse Buying: Designing for Self-Control with E-commerce.
- Keyword:
- Impulse Buying, Self-control, and Experimental Design
- Discipline:
- Social Sciences
-
- Creator:
- Moniri, Saman, Xiao, Xianghui, and Shahani, Ashwin J.
- Description:
- The data is comprised of 22 directories, each housing a .hdf file of the X-ray projections recorded during solidification of Al-Si-Cu-Sr. The flat and dark projections are also included as two separate .hdf files (total file count: 24). The raw data file is in .hdf format and can be reconstructed into .tiff, e.g., by using the TomoPy toolbox in Python.
- Keyword:
- Crystallization, growth modifiers, silicon, in situ, X-ray tomography
- Citation to related publication:
- Wang, Y., Gao, J., Ren, Y., De Andrade, V., & Shahani, A. J. (2020). Formation of a Three-Phase Spiral Structure Due to Competitive Growth of a Peritectic Phase with a Metastable Eutectic. JOM, 72(8), 2965–2973. https://doi.org/10.1007/s11837-020-04237-x
- Discipline:
- Engineering
-
Monthly water balance estimates for the Laurentian Great Lakes from 1950 to 2019 (v1.0) [Deprecated]
- Creator:
- Do, Hong X., Smith, Joeseph P., Fry, Lauren M., and Gronewold, Andrew D.
- Description:
- This data set contains a new estimate of monthly water balance components from 1950 to 2019 for the Laurentian Great Lakes, the largest freshwater system on Earth. The source code and inputs to derive the new estimates are also included in this dataset.
- Keyword:
- Great Lakes water levels, statistical inference, water balance, and data assimilation
- Citation to related publication:
- Do, H.X., Smith, J., Fry, L.M., and Gronewold, A.D., Seventy-year long record of monthly water balance estimates for Earth’s largest lake system (pending for submission) and Version Note: This dataset is deprecated and has been replaced by version 1.1, found at https://deepblue.lib.umich.edu/data/concern/data_sets/sb3978457
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:123037 (Tscherskia TRITON) - WholeBody. Raw Dataset includes 1601 TIF images (each 715 x 1288 x 1 voxel at 0.0493711582967448 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:123037 (Tscherskia TRITON) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 715 x 1288 x 1 voxel at 0.049371 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Tscherskia TRITON, 1987305166, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987305166
- Discipline:
- Science
-
- Creator:
- University of Michigan Museum of Zoology
- Description:
- Scan of specimen ummz:mammals:111984 (Handleyomys ALFAROI ALFAROI) - WholeBody. Raw Dataset includes 1601 TIF images (each 815 x 1310 x 1 voxel at 0.0421497172804555 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction. and Scan of specimen ummz:mammals:111984 (Handleyomys ALFAROI ALFAROI) - WholeBody. Reconstructed Dataset includes 2000 TIF images (each 815 x 1310 x 1 voxel at 0.042150 mm resolution, derived from 1601 scan projections), xtek and vgi files for volume reconstruction.
- Keyword:
- Animalia, Chordata, Mammalia, Rodentia, Cricetidae, Handleyomys ALFAROI ALFAROI, 1987286466, computed tomography, X-ray, and 3D
- Citation to related publication:
- For more information on the original UMMZ specimen, see: https://www.gbif.org/occurrence/1987286466
- Discipline:
- Science
-
- Creator:
- Wang, Yeqing, Gao, Jianrong, Ren, Yang, De Andrade, Vincent, and Shahani, Ashwin J
- Description:
- The data file contains (1) the grayscale images of the nano-tomography experiments that can be segmented into binary images and visualized to show the 3D morphology of three-phase spiral eutectics; and (2) Scanning electron micro of solidified sample.
- Keyword:
- Zinc alloys, spiral structure, thermodynamic calculations, synchrotron X-ray diffraction, and synchrotron X-ray nano-tomography
- Discipline:
- Engineering
-
- Creator:
- Liemohn, Michael W, Azari, Abigail R, Ganushkina, Natalia Yu, and Rastätter, Lutz
- Description:
- Scientists often try to reproduce observations with a model, helping them explain the observations by adjusting known and controllable features within the model. They then use a large variety of metrics for assessing the ability of a model to reproduce the observations. One such metric is called the relative operating characteristic (ROC) curve, a tool that assesses a model’s ability to predict events within the data. The ROC curve is made by sliding the event-definition threshold in the model output, calculating certain metrics and making a graph of the results. Here, a new model assessment tool is introduced, called the sliding threshold of observation for numeric evaluation (STONE) curve. The STONE curve is created by sliding the event definition threshold not only for the model output but also simultaneously for the data values. This is applicable when the model output is trying to reproduce the exact values of a particular data set. While the ROC curve is still a highly valuable tool for optimizing the prediction of known and pre-classified events, it is argued here that the STONE curve is better for assessing model prediction of a continuous-valued data set. and Data and code were created using IDL, but can also be accessed with the open-source Gnu Data Language (GDL; see https://github.com/gnudatalanguage/gdl)
- Keyword:
- ROC curve, STONE curve, data-model comparison, model validation, forecasting, and statistical methods
- Citation to related publication:
- Liemohn, M. W., Azari, A. R., Ganushkina, N. Yu., & Rastätter, L. (2020). The STONE curve: A ROC-derived model performance assessment tool. Earth and Space Science, 7, e2020EA001106. https://doi.org/10.2019/2020EA001106
- Discipline:
- Science
-
- Creator:
- Liemohn, Michael W
- Description:
- The editorial decision process for the Journal of Geophysics Research Space Physics is assisted by over 1,000 scientists every year, providing over 3,000 reviews per year. These statistics are presented for the years 2013 through 2018, showing some fluctuations but, overall, consistency in the response of the space physics research community to requests to serve as manuscript reviewers. Over half of these reviews are submitted on time, and the average time to review actually dropped as the load increased. This is greatly appreciated and the community is to be commended and thanked for their willingness to help make this journal thrive and remain a premiere publication in the field.
- Keyword:
- Editorial and reviewer statistics
- Citation to related publication:
- Liemohn, M. W. (2020). Editorial: Multiyear analysis of JGR Space Physics reviewing statistics. Journal of Geophysical Research Space Physics, 125, e2019JA027719. https://doi.org/10.1029/2019JA027719
- Discipline:
- Science
-
- Creator:
- Whitaker, Steven T., Nataraj, Gopal, Nielsen, Jon-Fredrik, and Fessler, Jeffrey A.
- Description:
- File: P,jf06Sep2019,mese.7 The multi-echo spin echo (MESE) data was acquired using a 3D acquisition with an initial 90 degree excitation pulse followed by 32 refocusing (180 degree) pulses, resulting in 32 echoes with echo spacing of 10 ms. The repetition time of the sequence was 1200 ms. Each refocusing pulse was flanked by crusher gradients to impart 14 cycles of phase across the imaging volume. The initial excitation pulse had time-bandwidth product of 6, duration of 3 ms, and slab thickness of 0.9 cm, and each refocusing pulse had time-bandwidth product of 2, duration of 2 ms, and slab thickness of 2.1 cm. The scan took 36 min 11 s and covered a field of view (FOV) of 22 x 22 x 0.99 cm^3 with matrix size 200 x 200 x 9., File: P,jf06Sep2019,b1.7 The Bloch-Siegert (BS) scans were acquired using a 3D acquisition. The excitation pulse of these scans had time-bandwidth product of 8 and duration of 1 ms. The pair of scans used +/-4 kHz off-resonant Fermi pulses between excitation and readout. The BS scans took 2 min 40 s in total and covered a FOV of 22 x 22 x 0.99 cm^3 with matrix size 200 x 50 x 9., File: P,jf06Sep2019,mwf.7 The small-tip fast recovery (STFR) scans were acquired using a 3D acquisition. The first two and last two scans were pairs of spoiled gradient-recalled echo (SPGR) scans with echo time difference of 2.3 ms. (In the related paper, only the first set was used, i.e., only 11 of the 13 scans were used.) The remaining scans used scan parameters that were optimized to minimize the Cramer-Rao Lower Bound (CRLB) of estimates of myelin water fraction (MWF). The RF pulses had time-bandwidth product of 8 and duration of 1 ms. Each pair of SPGR scans took 58 s and the nine STFR scans took 3 min 36 s for a total scan time of 5 min 32 s (4 min 34 s if one pair of SPGR scans is ignored). The scans covered a field of view (FOV) of 22 x 22 x 0.99 cm^3 with matrix size 200 x 200 x 9., File: meseslice5.mat Contains the 32 echoes of the MESE image data for the middle slice of the imaging volume. Saved using Mathworks MATLAB R2019a., File: b1slice5.mat Contains the transmit field inhomogeneity map for the middle slice of the imaging volume., File: recon.jld Key "img" contains the 11 STFR images for the middle slice of the imaging volume. Key "b0map" contains a field map estimated from the two SPGR scans. Key "mask" contains a mask of the voxels for which to estimate MWF. Key "T1img" contains a T1-weighted image for anatomical reference., File: headmask.mat Contains a mask for visualizing just the brain (ignores the skull) for the middle slice of the imaging volume., File: rois.mat Contains masks for various regions of interest (ROIs), used for computing statistics. Keys "mtopleft", "mtopright", "mbottomleft", and "mbottomright" refer to the corresponding locations on the anatomical reference image (see related paper). Key "mic" refers to the internal capsules, and key "mgm" refers to a gray matter ROI., The raw data files (P-files) can be read into the Julia programming language using the Julia version of the Michigan Image Reconstruction Toolbox ( https://github.com/JeffFessler/MIRT.jl) or into MATLAB using TOPPE ( https://github.com/toppeMRI/toppe). The reconstructed slices used in the related paper are provided for convenience, and are stored in .mat files that can be loaded into Julia (using the package MAT.jl) or MATLAB, and a .jld file that can be loaded into Julia (using the package JLD.jl). The Julia code for processing the data to create MWF maps is hosted publicly on GitHub at https://github.com/StevenWhitaker/STFR-MWF., and Files: toppe-master.zip and MIRT.jl-master.zip are archived versions of the TOPPE and Michigan Image Reconstruction Toolbox code sets from GitHub as of 2/28/2020.
- Keyword:
- myelin, machine learning, kernel learning, magnetic resonance imaging, and scan design
- Citation to related publication:
- Whitaker, S. T., Nataraj, G., Nielsen, J.-F., & Fessler, J. A. (2020). Myelin water fraction estimation using small-tip fast recovery MRI. Magnetic Resonance in Medicine, 84(4), 1977–1990. https://doi.org/10.1002/mrm.28259
- Discipline:
- Health Sciences and Engineering
-
Division of Reptiles and Amphibians
User Collection- Creator:
- University of Michigan Museum of Zoology
- Description:
- The Division of Reptiles and Amphibians maintains a collection that is worldwide in scope. The research collections contain over 200,000 catalogued lots representing approximately 435,000 individual specimens.
- Discipline:
- Science
13Works -
Division of Mammals
User Collection- Creator:
- University of Michigan Museum of Zoology
- Description:
- The Division of Mammals at the Museum of Zoology was established in 1837, and has grown steadily to its current size, with over 150,000 specimens. An important feature of the mammal collection at the Museum of Zoology is our emphasis on non-traditional specimens.
- Discipline:
- Science
109Works -
University of Michigan Museum of Zoology
User Collection- Creator:
- University of Michigan Museum of Zoology
- Description:
- The University of Michigan Museum of Zoology (UMMZ) is the center for the study of animal diversity on campus, focusing on the evolutionary origins of the planet’s animal species, the genetic information they contain and the communities and ecosystems they help form. Now an integral part of the Department of Ecology and Evolutionary Biology (EEB), the UMMZ houses world-class collections, containing more than 15 million specimens, span almost 200 years of regional and global biodiversity studies and that support a multi-faceted Departmental research and teaching program.
- Discipline:
- Science
4Sub-collections0Works -
- Creator:
- van Velden, Grace and Reddy, Raghav
- Description:
- A household survey was developed to capture household perceptions and behaviors around drinking water use. It consisted of several modules: key informant and household demographics, household assets and consumption, water use behaviors in the dry season, water use behaviors during the rest of the year, and water supply maintenance and repair. Intervention and safe water device surveys were also developed; the household and intervention surveys were administered via Qualtrics. and This record consists of several survey instruments, exported where appropriate from Qualtrics into PDF and .qsf.
- Keyword:
- Bangladesh, arsenic, sustainability, survey
- Discipline:
- Engineering
-
- Creator:
- Hatch, Nan E.
- Description:
- Craniosynostosis is the premature fusion of cranial bones. The goal of this study was to determine if delivery of recombinant tissue nonspecific alkaline phosphatase (TNAP) could prevent or diminish the severity of craniosynostosis in a C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis or a BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis. Mice were injected with a lentivirus encoding a mineral targeted form of TNAP immediately after birth. Cranial bone fusion as well as cranial bone volume, mineral content and density were assessed by micro computed tomography. Craniofacial shape was measured with calipers., Alkaline phosphatase, alanine amino transferase (ALT) and aspartate amino transferase (AST) activity levels were measured in serum. Neonatal delivery of TNAP diminished craniosynostosis severity from 94% suture obliteration in vehicle treated mice to 67% suture obliteration in treated mice, p<0.02) and the incidence of malocclusion from 82.4% to 34.7% (p<0.03), with no effect on cranial bone in C57BL/6 FGFR2C342Y/+ mice. In contrast, treatment with TNAP improved cranial bone volume (p< 0.01), density (p< 0.01) and mineral content (p< 0.01) but had no effect on craniosynostosis or malocclusion in BALB/c FGFR2C342Y/+ mice. , These results indicate that post-natal recombinant TNAP enzyme therapy diminishes craniosynostosis severity in the C57BL/6 FGFR2C342Y/+ neonatal onset mouse model of Crouzon syndrome, and that effects of exogenous TNAP are genetic background dependent., and Included in this collection is one set of images representing the C57BL/6 FGFR2C342Y/+ model of neonatal onset craniosynostosis, and one for the BALB/c FGFR2C342Y/+ model of postnatal onset craniosynostosis
- Keyword:
- craniofacial, bone, craniosynostosis, FGFR2, TNAP, mouse model, and development
- Discipline:
- Health Sciences
2Works -
- Creator:
- Huffaker, Jordan S., Kummerfeld, Jonathan K., Lasecki, Walter S., and Ackerman, Mark S.
- Description:
- The following files include supplementary materials for our CHI 2020 paper "Crowdsourced Detection of Emotionally Manipulative Language". Namely, these materials include the dataset that was used in the evaluation. See the paper for more details.
- Keyword:
- Crowdsourcing, Media Manipulation, Rhetoric, and Emotion
- Citation to related publication:
- J.S. Huffaker, J.K. Kummerfeld, W.S. Lasecki, M.S. Ackerman. Crowdsourced Detection of Emotionally Manipulative Language. In Proceedings of the ACM Conference on Human Factors in Computing Systems (CHI 2020). Honolulu, HI. 2020.
- Discipline:
- Engineering
-
- Creator:
- Moniri, Saman, Bale, Hrishikesh , Volkenandt, Tobias, Wang, Yeqing, Gao, Jianrong, Lu, Tianxian, Sun, Kai, and Shahani, Ashwin J.
- Description:
- The data file contains (1) the grayscale images of the nano-tomography experiments that can be segmented into binary images and visualized to show the 3D morphology of spiral eutectics; and (2) crystallographic orientation maps of serial-sectioned sample, which can be processed in a variety of EBSD software packages.
- Keyword:
- crystallization, chirality, self-organization, and spiral eutectics
- Citation to related publication:
- Moniri, S., Bale, H., Volkenandt, T., Wang, Y., Gao, J., Lu, T., Sun, K., Ritchie, R.O., & Shahani, A.J. (23 January 2020). Multi‐Step Crystallization of Self‐Organized Spiral Eutectics. Small (1906146). https://doi.org/10.1002/smll.201906146
- Discipline:
- Engineering
-
- Creator:
- Ahluwalia, Vinayak S., Steimle, Lauren N., and Denton, Brian T.
- Description:
- This repository includes test instances of infinite-horizon Markov decision processes with multiple models of parameters (i.e., "Multi-model Markov decision processes"). We generated each test instance in the dataset using a Python script. The test instances can be read in using the provided C++ and Python script. See the README for details.
- Keyword:
- Markov decision processes, mixed-integer programming, stochastic programming, and dynamic programming
- Citation to related publication:
- Ahluwalia, Steimle, and Denton. "Policy-based branch-and-bound for infinite-horizon Multi-model Markov decision processes". 2020.
- Discipline:
- Engineering
-
- Creator:
- Hatch, Nan E.
- Description:
- Crouzon FGFR2-C342Y/+ and wild type littermate pups on a C57BL/6 congenic background were injected with lentivirus expressing recombinant TNAP enzyme or phosphate buffered saline shortly after birth. Mice were euthanized 3 weeks after birth for analyses.
- Keyword:
- craniofacial, bone, craniosynotosis, FGFR2, TNAP tissue nonspecific alkaline phosphatase, mouse model, and development
- Citation to related publication:
- Nam, H. K., Vesela, I., Schutte, S. D., & Hatch, N. E. (2020). Viral delivery of tissue nonspecific alkaline phosphatase diminishes craniosynostosis in one of two FGFR2C342Y/+ mouse models of Crouzon syndrome. PLOS ONE, 15(5), e0234073. https://doi.org/10.1371/journal.pone.0234073
- Discipline:
- Health Sciences
-
- Creator:
- Hegedus, Alexander M
- Description:
- This is the README for the LunarSynchrotronArray package, maintained by Dr. Alex Hegedus alexhege@umich.edu This code repository corresponds to the Hegedus et al. 2020 (accepted) Radio Science paper, "Measuring the Earth's Synchrotron Emission from Radiation Belts with a Lunar Near Side Radio Array". The arxiv link for the paper is https://arxiv.org/abs/1912.04482. The DOI link is https://doi.org/10.1029/2019RS006891 , The Earth's Ionosphere is home to a large population of energetic electrons that live in the balance of many factors including input from the Solar wind, and the influence of the Earth's magnetic field. These energetic electrons emit radio waves as they traverse Earth's magnetosphere, leading to short‐lived, strong radio emissions from local regions, as well as persistent weaker emissions that act as a global signature of the population breakdown of all the energetic electrons. Characterizing this weaker emission (Synchrotron Emission) would lead to a greater understanding of the energetic electron populations on a day to day level. A radio array on the near side of the Moon would always be facing the Earth, and would well suited for measuring its low frequency radio emissions. In this work we simulate such a radio array on the lunar near side, to image this weaker synchrotron emission. The specific geometry and location of the test array were made using the most recent lunar maps made by the Lunar Reconnaissance Orbiter. This array would give us unprecedented day to day knowledge of the electron environment around our planet, providing reports of Earth's strong and weak radio emissions, giving both local and global information. , This set of codes should guide you through making the figures in the paper, as well as hopefully being accessible enough for changing the code for your own array. I would encourage you to please reach out to collaborate if that is the case! Requirements: , and CASA 4.7.1 (or greater?) built on python 2.7 Example link for Red Hat 7 https://casa.nrao.edu/download/distro/casa/release/el7/casa-release-4.7.1-el7.tar.gz Users may follow this guide to download and install the correct version of CASA for their system https://casa.nrao.edu/casadocs/casa-5.5.0/introduction/obtaining-and-installing CASA executables should be fairly straightforward to extract from the untarred files. gcc 4.8.5 or above (or below?) GCC installation instructions can be found here: https://gcc.gnu.org/install/ SPICE (I use cspice here) https://naif.jpl.nasa.gov/naif/toolkit_C.html As seen in lunar_furnsh.txt which loads the SPICE kernels, you also must download KERNELS_TO_LOAD = ( '/home/alexhege/SPICE/LunarEph/moon_pa_de421_1900-2050.bpc' '/home/alexhege/SPICE/LunarEph/moon_080317.tf' '/home/alexhege/SPICE/LunarEph/moon_assoc_me.tf' '/home/alexhege/SPICE/LunarEph/pck00010.tpc' '/home/alexhege/SPICE/LunarEph/naif0008.tls' '/home/alexhege/SPICE/LunarEph/de430.bsp' ) All of which can be found at https://naif.jpl.nasa.gov/pub/naif/generic_kernels/ SLDEM2015_128_60S_60N_000_360_FLOAT.IMG for the lunar surface data by LRO LOLA found at http://imbrium.mit.edu/DATA/SLDEM2015/GLOBAL/FLOAT_IMG/
- Citation to related publication:
- Hegedus, A., Nenon, Q., Brunet, A., Kasper, J., Sicard, A., Cecconi, B., MacDowall, R., & Baker, D. (2019). Measuring the Earth's Synchrotron Emission from Radiation Belts with a Lunar Near Side Radio Array. https://arxiv.org/abs/1912.04482 and Hegedus, A., Nenon, Q., Brunet, A., Kasper, J., Sicard, A., Cecconi, B., MacDowall, R., & Baker, D. (2020). Radio Science. https://doi.org/10.1029/2019RS006891
- Discipline:
- Engineering and Science
-
- Creator:
- Nelson, Arin D.
- Description:
- These MATLAB data files contain all the observations and model output used in the article Improved Internal Gravity Wave Spectral Continuum in a Regional Ocean Model by Nelson et al., recently submitted to Journal of Geophysical Research: Oceans.
- Keyword:
- Ocean, Ocean Mooring, Ocean Modeling, and Internal Waves
- Citation to related publication:
- Nelson, A. D., Arbic, B. K., Menemenlis, D., Peltier, W. R., Alford, M. H., Grisouard, N., & Klymak, J. M. (2020). Improved Internal Wave Spectral Continuum in a Regional Ocean Model. Journal of Geophysical Research: Oceans, 125(5), e2019JC015974. https://doi.org/10.1029/2019JC015974
- Discipline:
- Science
-
- Creator:
- Foltynek, Tomas, Ruas, Terry, Scharpf, Philipp , Meuschke, Norman, Schubotz, Moritz , Grosky, William , and Gipp, Bela
- Description:
- This data set is comprised of multiple folders. The corpus folder contains raw text used for training and testing in two splits, "document" and "paragraph". The Spun documents and paragraphs are generated using the SpinBot tool ( https://spinbot.com/API). The paragraph split is generated by only selecting paragraphs with 3 or more sentences in the document split. Each folder is divided in mg (i.e., machine generated through SpinBot) and og (i.e., original generated file), The human judgement folder contains the human evaluation between original and spun documents (sample). It also contains the answers (keys) and survey results. , The models folder contains the machine learning classifier models for each word embedding technique used (only for document split training). The models were exported using pickle (Python 3.6). The grid search for hyperparameter adjustments is described in the paper. , and The vector folders (train and test) contains the average of all word vectors for each document and paragraph. Each line has the number of dimensions of the word embeddings technique used (see paper for more details) followed by its respective class (i.e, label mg or og). Each file belong to one class, either "mg" or "og". The values are comma-separated (.csv). The extension is .arff can be read as a normal .txt file.
- Keyword:
- paraphrase detection, plagiarism detection, document classification, and word embeddings
- Citation to related publication:
- Foltýnek, T. & Ruas, T. & Scharpf, P. & Meuschke, N. & Schubotz, M. & Grosky, W. & Gipp, B., “Detecting Machine-obfuscated Plagiarism,” in Sustainable Digital Communities, vol. 12051 LNCS, Springer, 2020, pp. 816–827. https://doi.org/10.1007/978-3-030-43687-2_68
- Discipline:
- General Information Sources
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Smith, J., Gronewald, A. et al. Summary Report: Development of the Large Lake Statistical Water Balance Model for Constructing a New Historical Record of the Great Lakes Water Balance. Submitted to: The International Watersheds Initiative of the International Joint Commission. Accessible at https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf, Large Lake Statistical Water Balance Model (L2SWBM). https://www.glerl.noaa.gov/data/WaterBalanceModel/, and Gronewold, A.D., Smith, J.P., Read, L. and Crooks, J.L., 2020. Reconciling the water balance of large lake systems. Advances in Water Resources, p.103505.
- Discipline:
- Science and Engineering
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/ , and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Smith, J., Gronewald, A. et al. Summary Report: Development of the Large Lake Statistical Water Balance Model for Constructing a New Historical Record of the Great Lakes Water Balance. Submitted to: The International Watersheds Initiative of the International Joint Commission. Accessible at https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf, Large Lake Statistical Water Balance Model (L2SWBM). https://www.glerl.noaa.gov/data/WaterBalanceModel/, and Gronewold, A.D., Smith, J.P., Read, L. and Crooks, J.L., 2020. Reconciling the water balance of large lake systems. Advances in Water Resources, p.103505.
- Discipline:
- Science and Engineering
-
- Creator:
- Bustamante, Angela C., Opron, Kristopher, Ehlenbach, William J., Crane, Paul K., Keene, Dirk, Standiford, Theodore J., and Singer, Benjamin H.
- Description:
- This study was conducted to detect and analyze modules, or clusters of genes, associated with sepsis, using RNAseq data obtained from 12 participants who died of sepsis and 12 participants who died of non-infectious critical illness while hospitalized. This deposit contains the input data and parameters needed to reproduce the weighted gene co-expression network analysis (WGCNA) and gene enrichment analysis performed on this data. This analysis requires the R packages "WGCNA" version 1.68 and "DESeq2" version 1.22.2 available for download from bioconductor ( http://bioconductor.org). The external bioinformatics tool DAVID version 6.8 ( https://david.ncifcrf.gov/) was used as an additional gene enrichment analysis. Please see the supplemental methods document within this deposit and published research letter for more detailed information.
- Keyword:
- Sepsis, RNAseq, Transcriptomics, Human, and Brain
- Citation to related publication:
- Bustamante, A.C., Opron, K., Ehlenbach, W.J., Larson, E.B., Crane, P.K., Keene, C.D., Standiford, T.J., Singer, B.H., 2020. Transcriptomic Profiles of Sepsis in the Human Brain. Am J Respir Crit Care Med. https://doi.org/10.1164/rccm.201909-1713LE
- Discipline:
- Science
-
- Creator:
- Niemi, Nathan A. and Abbey, Alyssa L.
- Description:
- These data were produced in the scope of research into the timing, rate, and magnitude of extensional exhumation along the length of the Rio Grande Rift in Colorado and New Mexico. The low-temperature (apatite and zircon (U-Th)/He) thermochronometric ages presented in this data set are sensitive to near-surface temperatures (~80C and 180C, respectively) and record the progressive exhumation of the rock mass from which the samples were collected towards the Earth's surface. These thermochronometric ages, and the differences between them, provide insight into the absolute timing, exhumation rate and total magnitude of exhumation on the normal faults that bound the Rio Grande Rift. and The QTQt program mentioned (Version QTQt64R5.6.2a was used for the data presented in this deposit) is not openly available for download, but is described in the Gallagher 2012 publication referenced, and can be requested from its author. For more information on the request process and a user guide, see http://www.iearth.org.au/codes/QTQt/
- Keyword:
- thermochronology, helium dating, (U-Th)/He, Rio Grande Rift, New Mexico, Colorado, and extensional tectonics
- Citation to related publication:
- Abbey, A. L., & Niemi, N. A. (2020). Perspectives on Continental Rifting Processes From Spatiotemporal Patterns of Faulting and Magmatism in the Rio Grande Rift, USA. Tectonics, 39(1), e2019TC005635. https://doi.org/10.1029/2019TC005635
- Discipline:
- Science
-
- Creator:
- Holmes, Patrick
- Description:
- This work was collected to evaluate Stability Basins for characterizing the limits of human stability during Sit-to-Stand. and MATLAB code was used to process the data into individual trials. Trials are labeled by Sit-to-Stand type (Natural, Momentum-Transfer, or Quasi-Static) and experimental condition. MATLAB code for analyzing the data and computing Stability Basins is provided. A GUI is provided to animate a subject's movement and display projections of the Stability Basins in the horizontal and vertical planes.
- Keyword:
- biomechanics, mathematical model, locomotion, fall risk, reachability, and feedback control
- Citation to related publication:
- https://arxiv.org/abs/1908.01876 and Holmes, P. D., Danforth, S. M., Fu, X.-Y., Moore, T. Y., & Vasudevan, R. (n.d.). Characterizing the limits of human stability during motion: Perturbative experiment validates a model-based approach for the Sit-to-Stand task. Royal Society Open Science, 7(1), 191410. https://doi.org/10.1098/rsos.191410
- Discipline:
- Engineering
-
- Creator:
- Davis Rabosky, Alison R., Moore, Talia Y., Sánchez-Paredes, Ciara M., Westeen, Erin P., Larson, Joanna G., Sealey, Briana A., and Balinski, Bailey A.
- Description:
- Animals in nature use diverse strategies to evade or deter their predators, including many vivid behavioural displays only qualitatively described from field encounters with natural predators or humans. Within venomous snake mimicry, stereotyped anti-predator displays are suggested to be a critical component of the warning signal given by toxic models and thus under strong selection for independent convergence in mimetic species. However, no studies have systematically quantified variation in snake anti-predator displays across taxonomically broad clades to test how these behaviours evolve across species within a phylogenetic comparative methods framework. Here we describe a new, high-throughput approach for collecting and scoring snake anti-predator displays in the field that demonstrates both low observer bias and infinite extension across any species. Then, we show our method's utility in quantitatively comparing the behaviour of 20 highly-divergent snake species from the Amazonian lowlands of Peru. We found that a simple experimental setup varying simulated predator cues was very successful in eliciting anti-predator displays across species and that high-speed videography captured a greater diversity of behavioural responses than described in the literature. We also found that although different display components evolve at different rates with complicated patterns of covariance, there is clear evidence of evolutionary convergence in anti-predator displays among distantly related elapid coral snakes and their colubrid mimics. We conclude that our approach significantly advances opportunity for future analyses of snake behaviour, kinematics, and the evolution of anti-predator signals more generally, especially macroevolutionary analyses across clades with similarly intractable behavioural diversity.
- Keyword:
- Batesian mimicry, phylogenetic comparative methods, signal evolution, aposematism, simulated predator cues, coral snakes, and Peruvian Amazon
- Citation to related publication:
- Alison R. Davis Rabosky, Talia Y. Moore, Ciara M. Sanchez-Paredes, Erin P. Westeen, Joanna G. Larson, Briana A. Sealey, Bailey A. Balinski (2020) Convergence and divergence in anti-predator displays: A novel approach to quantitative behavioural comparison in snakes. Biological Journal of the Linnean Society http://dx.doi.org/10.1093/biolinnean/blaa222
- Discipline:
- Science
-
- Creator:
- Smith, Joeseph P., Gronewold, Andrew D., Read, Laura, Crooks, James L., School for Environment and Sustainability, University of Michigan, Department of Civil and Environmental Engineering, University of Michigan, and Cooperative Institute for Great Lakes Research, University of Michigan
- Description:
- Using the statistical programming package R ( https://cran.r-project.org/), and JAGS (Just Another Gibbs Sampler, http://mcmc-jags.sourceforge.net/), we processed multiple estimates of the Laurentian Great Lakes water balance components -- over-lake precipitation, evaporation, lateral tributary runoff, connecting channel flows, and diversions -- feeding them into prior distributions (using data from 1950 through 1979), and likelihood functions. The Bayesian Network is coded in the BUGS language. Water balance computations assume that monthly change in storage for a given lake is the difference between beginning of month water levels surrounding each month. For example, the change in storage for June 2015 is the difference between the beginning of month water level for July 2015 and that for June 2015., More details on the model can be found in the following summary report for the International Watersheds Initiative of the International Joint Commission, where the model was used to generate a new water balance historical record from 1950 through 2015: https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf. Large Lake Statistical Water Balance Model (L2SWBM): https://www.glerl.noaa.gov/data/WaterBalanceModel/, and This data set has a shorter timespan to accommodate a prior which uses data not used in the likelihood functions.
- Keyword:
- Water, Balance, Great Lakes, Laurentian, Machine Learning, Machine, Learning, Lakes, Bayesian, and Network
- Citation to related publication:
- Smith, J., Gronewald, A. et al. Summary Report: Development of the Large Lake Statistical Water Balance Model for Constructing a New Historical Record of the Great Lakes Water Balance. Submitted to: The International Watersheds Initiative of the International Joint Commission. Accessible at https://www.glerl.noaa.gov/pubs/fulltext/2018/20180021.pdf, Large Lake Statistical Water Balance Model (L2SWBM). https://www.glerl.noaa.gov/data/WaterBalanceModel/, and Gronewold, A.D., Smith, J.P., Read, L. and Crooks, J.L., 2020. Reconciling the water balance of large lake systems. Advances in Water Resources, p.103505.
- Discipline:
- Science and Engineering
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- Apatite fission track thermochronometry data were collected from the Eastern Greater Caucasus orogen, Azerbaijan. Thermochronometry data constrain the history of exhumation and deformation of rocks within the orogen, which is an active accretionary prism. Thermochronometry data record the timing of cooling of a rock sample beneath a given closure temperature. Given an assumed or inferred geothermal gradient, thermochronometric ages can be used to infer exhumation rates and make interpretations about rates of deformation in orogens. The apatite fission track data presented here are analyzed in concert with apatite (U-Th)/He and zircon (U-Th)/He ages reported in Tye et al., in prep., to characterize the exhumation history of the Eastern Greater Caucasus.
- Keyword:
- thermochronometry, apatite fission track, Caucasus
- Citation to related publication:
- Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., & Babayev, G. R. (2021). Sedimentary response to a collision orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments. Basin Research, 33(2), 933–967. https://doi.org/10.1111/bre.12499
- Discipline:
- Science
-
- Creator:
- Wittkopp, Patricia J and Massey, Jonathan H
- Description:
- Data provided in this record were collected in the course of studying the genetic basis of differences in wing pigmentation and wing display between Drosophila elegans and Drosophila gunungcola.
- Citation to related publication:
- Massey, J. H., Rice, G. R., Firdaus, A. S., Chen, C.-Y., Yeh, S.-D., Stern, D. L., & Wittkopp, P. J. (2020). Co-evolving wing spots and mating displays are genetically separable traits in Drosophila. Evolution, 74(6), 1098–1111. https://doi.org/10.1111/evo.13990
- Discipline:
- Science
-
- Creator:
- Liu, Meichen
- Description:
- We intend to figure out the difference of stress drops, which is a characteristic source parameter, between shallow and deep-focus earthquakes. Significant stress drop difference may shed light on the difference of physical mechanisms of shallow and deep-focus earthquakes, which has been a elusive question. We select from deep-focus earthquakes (> 400 km) in 2000-2018 and obtain their stress drops using P and S waves. We find that stress drops of deep-focus earthquakes are about one order of magnitude higher than that of shallow earthquakes, indicating about one order of magnitude higher shear strength of shallow faults than faults in the mantle. The wide range of stress drops further suggests coexistence of phase transformation and shear-induced melting mechanisms of deep-focus earthquakes.
- Citation to related publication:
- Liu, M., Huang, Y., & Ritsema, J. (2020, March 4). Stress drop variation of deep-focus earthquakes based on empirical Green's function [preprint]. Submitted to Geophysical Research Letters. https://doi.org/10.31223/osf.io/8jx6p and Liu, M., Huang, Y., & Ritsema, J. (2020). Stress Drop Variation of Deep-Focus Earthquakes Based on Empirical Green’s Functions. Geophysical Research Letters, 47(9), e2019GL086055. https://doi.org/10.1029/2019GL086055
- Discipline:
- Science
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- The Eastern Greater Caucasus is a mountain belt in western Asia that formed as an accretionary prism above an active subduction zone. Because of the bedrock exposure in the range, it offers a unique opportunity to research deformation processes in accretionary prisms, which are ubiquitous above the Earth's many subduction zones but are typically submarine and difficult to investigate. The data presented here result from field geologic mapping in several swaths roughly perpendicular to the mountain range that together span the entire range across strike. The data serve will serve as the basis for inference of the deep structural architecture of the range and characterization of the styles of deformation present in the range.
- Keyword:
- structural geology, Greater Caucasus, tectonics, geologic mapping, and accretionary prism
- Citation to related publication:
- Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., & Babayev, G. R. (2021). Sedimentary response to a collision orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments. Basin Research, 33(2), 933–967. https://doi.org/10.1111/bre.12499
- Discipline:
- Science
-
- Creator:
- Tye, Alexander R, Niemi, Nathan A, Safarov, Rafig T, Kadirov, Fakhraddin A, Babayev, Gulam R
- Description:
- The dataset contains U-Pb radiometric ages of zircon grains from sedimentary rocks and modern river sands from the Caucasus region of western Asia. The data were collected as part of a research project investigating the effects of continental collision in the Caucasus region on regional erosion and sedimentary systems. The data are presented using the standard quantities reported for zircon U-Pb age analyses at the University of Arizona Laserchron Center.
- Keyword:
- detrital zircon, provenance, and U-Pb
- Citation to related publication:
- Tye, A. R., Niemi, N. A., Safarov, R. T., Kadirov, F. A., & Babayev, G. R. (2021). Sedimentary response to a collision orogeny recorded in detrital zircon provenance of Greater Caucasus foreland basin sediments. Basin Research, 33(2), 933–967. https://doi.org/10.1111/bre.12499
- Discipline:
- Science
-
- Creator:
- Lim, Hongki and Dewaraja, Yuni K.
- Description:
- Interest in quantitative imaging of Y-90 is growing because transarterial radioembolization (RE) with Y-90 loaded microspheres is a promising and minimally invasive treatment that is FDA approved for unresectable primary and metastatic liver tumors. These cancers are a leading cause of cancer mortality and morbidity. Radioembolization is a therapy that irradiates liver tumors with radioactive microspheres administered through a microcatheter placed in the hepatic arterial vasculature. Radioembolization is based on the principle that healthy liver and tumor are mainly vascularized by the portal vein and the hepatic artery respectively. As a result, radioactive microspheres are preferentially located in the lesions after they are administered via the hepatic artery.
- Keyword:
- Y-90, PET, SPECT, CT, Segmentation, Organ, Tumor, Label
- Citation to related publication:
- Van, B. J., Dewaraja, Y. K., Sangogo, M. L., & Mikell, J. K. (2021). Y-90 SIRT: Evaluation of TCP variation across dosimetric models. EJNMMI Physics, 8(1), 45. https://doi.org/10.1186/s40658-021-00391-6
- Discipline:
- Health Sciences
-
- Creator:
- Carlson, Zachary
- Description:
- Data repository for supplemental data for manuscript. Article and data set are currently under review by publisher. Email for more information.
- Citation to related publication:
- Carlson, Z., Hafner, H., Mulcahy, M., Bullock, K., Zhu, A., Bridges, D., Bernal-Mizrachi, E., & Gregg, B. (2020). Lactational metformin exposure programs offspring white adipose tissue glucose homeostasis and resilience to metabolic stress in a sex-dependent manner. American Journal of Physiology-Endocrinology and Metabolism, 318(5), E600–E612. https://doi.org/10.1152/ajpendo.00473.2019
- Discipline:
- Science
-
- Creator:
- Horsley, Timothy J. and Sampson, Christina P.
- Description:
- The data (raw data, composite files [processed], and some images) can be read by the program TerraSurveyor. Version 3.0.34.10 of the software was used to create the composite files in this deposit. and The magnetometer data was the second step in a geophysical survey program that began with magnetic susceptibility survey of a portion of the Weedon Island Preserve in St. Petersburg, Florida. Geophysical survey was used to map human occupation of the study area and to guide subsequent archaeological excavations.
- Keyword:
- magnetometry, geophysical survey, remote sensing, Florida archaeology, and coastal archaeology
- Citation to related publication:
- Sampson, C. P. (2019) Safety Harbor at the Weeden Island Site: Late Pre-Columbian Craft, Community, and Complexity on Florida's Gulf Coast. PhD Dissertation, University of Michigan. and Sampson, Christina Perry and Timothy J. Horsley. Using Multi-Staged Magnetic Survey and Excavation to Assess Community Settlement Organization: A Case Study from the Central Peninsular Gulf Coast of Florida. Advances in Archaeological Practice. Cambridge University Press: 18 December 2019. https://doi.org/10.1017/aap.2019.45
- Discipline:
- Science and Social Sciences
-
- Creator:
- DeLong, Michael R, Tandon, Vickram J, Farajzadeh, Matthew, Berlin, Nicholas L, MacEachern, Mark P, Rudkin, George H, Da Lio, Andrew L, and Cederna, Paul S
- Description:
- The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Systematic Review, Acellular Dermal Matrix, Breast Reconstructions, and Tissue Expanders
- Citation to related publication:
- DeLong MR, Tandon VJ, Farajzadeh M, Berlin NL, MacEachern MP, Rudkin GH, Da Lio AL, Cederna PS. (2019). Systematic review of the impact of acellular dermal matrix on aesthetics and patient satisfaction in tissue expander-to-implant breast reconstructions. Plastic and Reconstructive Surgery. and https://doi.org/10.1097/PRS.0000000000006212
- Discipline:
- Health Sciences
-
- Creator:
- Lee, Joyce Y, Knauer, Heather A, Lee, Shawna J, MacEachern, Mark P, and Garfield, Craig F
- Description:
- The dataset includes all citations considered for inclusion in the systematic review. The citations are accessible in Endnote (enlx), as well as through the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Systematic Review, Fathers, Education, and Perinatal
- Citation to related publication:
- Lee JY, Knauer HA, Lee SJ, MacEachern MP, Garfield CF. (2018). Father-inclusive perinatal parent education programs: A systematic review. Pediatrics, 142(1). PMID: 29903835. and https://doi.org/10.1542/peds.2018-0437
- Discipline:
- Health Sciences
-
- Creator:
- Muzyk, Andrew, Smothers, Zachary, Akrobetu, Dennis, Ruiz Veve, Jennifer, MacEachern, Mark P, Tetrault, Jeanette M, and Gruppen, Larry
- Description:
- The dataset includes all citations considered for inclusion in the scoping review. The citations are accessible in Endnote (enlx) and Microsoft Excel (xlsx), as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the published methods for more information.
- Keyword:
- Medical Education, Substance Use Disorders, and Scoping Review
- Citation to related publication:
- Muzyk A, Smothers ZPW, Akrobetu D, Ruiz Veve J, MacEachern M, Tetrault JM, Grupen L. (2019). Substance use disorder education in medical schools: A scoping review of the literature. Academic Medicine. PMID: 31348067. and https://doi.org/10.1097/ACM.0000000000002883
- Discipline:
- Health Sciences
-
- Creator:
- MacEachern, Mark P, Marti, Kyriaki C, Mylonas, Anastassios I, and Gruppen, Larry
- Description:
- The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote (enlx) file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes. See the methods of the article for more information.
- Keyword:
- Dental Education, Dentistry, Education, Humanities, and Scoping Review
- Citation to related publication:
- Marti KC, Mylonas AI, MacEachern M, Gruppen L. (2019). Humanities in predoctoral dental education: A scoping review. Journal of Dental Education, 83(10), 1174-1198. DOI: 10.21815/JDE.019.126, http://www.jdentaled.org/content/83/10/1174.long, and https://doi.org/10.21815/JDE.019.126
- Discipline:
- Health Sciences
-
- Creator:
- Tan, Meng H, Iyengar, Ravi, Mizokami-Stout, Kara, Yentz, Sarah, MacEachern, Mark P, Shen, Li Yan, Redman, Bruce, and Gianchandani, Roma
- Description:
- The dataset includes most citations considered for inclusion in the scoping review. The citations are accessible in the Endnote file, as well as the primary citation export files from each database. The literature search strategies are included for reproducibility and transparency purposes.
- Keyword:
- Literature search, Scoping review, and Endocrinopathies
- Citation to related publication:
- Tan MH, Iyengar R, Mizokami-Stout K, et al. Spectrum of immune checkpoint inhibitors-induced endocrinopathies in cancer patients: a scoping review of case reports. Clin Diabetes Endocrinol. 2019;5:1. Published 2019 Jan 22. https://doi.org/10.1186/s40842-018-0073-4
- Discipline:
- Health Sciences
-
- Creator:
- Budak, Ceren, Goel, Sharad, and Rao, Justin M
- Description:
- Our primary analysis is based on articles published in 2013 by the top thirteen US news outlets and two popular political blogs. To compile the set of articles published by these outlets, we first examined the complete web-browsing records for US-located users who installed the Bing Toolbar, an optional add-on application for the Internet Explorer web browser. For each of the fifteen news sites, we recorded all unique URLs that were visited by at least ten toolbar users, and we then crawled the news sites to obtain the full article title and text. This process resulted in a corpus of 803,146 articles published on the fifteen news sites over the course of a year, with each article annotated with its relative popularity. , Next, we built two binary classifiers using large-scale logistic regression. The first classifier—which we refer to as the news classifier —identifies “news” articles (i.e., articles that would typically appear in the front section of a traditional newspaper). The second classifier—the politics classifier —identifies political news from the subset of articles identified as news by the first classifier. 340,191 (42 percent) were classified as news. On the set of 340,191 news articles, 114,814 (34 percent) were classified as political. , Having identified approximately 115,000 political news articles, we next seek to categorize the articles by topic (e.g., gay rights, healthcare, etc.), and to quantify the political slant of the article. To do so, we turn to human judges recruited via Mechanical Turk to analyze the articles. For every day in 2013, we randomly selected two political articles, when available, from each of the 15 outlets we study, with sampling weights equal to the number of times the article was visited by our panel of toolbar users., Amazon Mechanical Turk Labeling task: To detect and control for possible preconceptions of an outlet’s ideological slant, workers, upon first entering the experiment, were randomly assigned to either a blinded or unblinded condition. In the blinded condition, workers were presented with only the article’s title and text, whereas in the unblinded condition, they were additionally shown the name of the outlet in which the article was published. Each article was then analyzed by two workers, one each from the sets of workers in the two conditions. For each article, each worker completed the following three tasks. First, they provided primary and secondary article classifications from a list of fifteen topics: (1) civil rights; (2) Democrat scandals; (3) drugs; (4) economy; (5) education; (6) elections; (7) environment; (8) gay rights; (9) gun-related crimes; (10) gun rights/regulation; (11) healthcare; (12) international news; (13) national security; (14) Republican scandals; and (15) other. , and Second, workers determined whether the article was descriptive news or opinion. Third, to measure ideological slant, workers were asked, “Is the article generally positive, neutral, or negative toward members of the Democratic Party?” and separately, “Is the article generally positive, neutral, or negative toward members of the Republican Party?” Choices for these last two questions were provided on a five-point scale: very positive, somewhat positive, neutral, somewhat negative, and very negative. To mitigate question-ordering effects, workers were initially randomly assigned to being asked either the Democratic or Republican party question first; the question order remained the same for any subsequent articles the worker rated. Finally, we assigned each article a partisanship score between –1 and 1, where a negative rating indicates that the article is net left-leaning and a positive rating indicates that it is net right-leaning. Specifically, for an article’s depiction of the Democratic Party, the five-point scale from very positive to very negative is encoded as –1, –0.5, 0, 0.5, 1. Analogously, for an article’s depiction of the Republican Party, the scale is encoded as 1, 0.5, 0, –.0.5, –1. The score for each article is defined as the average over these two ratings. Thus, an average score of –1, for example, indicates that the article is very positive toward Democrats and very negative toward Republicans. The result of this procedure is a large, representative sample of political news articles, with direct human judgments on partisanship and article topic.
- Keyword:
- news media, media bias, crowdsourcing, and machine learning
- Citation to related publication:
- https://academic.oup.com/poq/article-abstract/80/S1/250/2223443/?redirectedFrom=fulltext and Ceren Budak, Sharad Goel, Justin M. Rao, Fair and Balanced? Quantifying Media Bias through Crowdsourced Content Analysis, Public Opinion Quarterly, Volume 80, Issue S1, 2016, Pages 250–271, https://doi.org/10.1093/poq/nfw007
- Discipline:
- Social Sciences
-
- Creator:
- Gebarski, Benjamin B. and Becker, Udo
- Description:
- Files are uploaded as crystallographic information files (.cif), the standard text file format for representing crystallographic information. These files contain the optimized molecular models for pentavalent plutonium incorporation reactions into/onto barite, anglesite, celestine, anhydrite, aragonite, and calcite host minerals.
- Keyword:
- actinide, quantum mechanics, molecular model, plutonium, incorporation, surface, radioactive, contamination, and nuclear waste
- Citation to related publication:
- Gebarski, B. B. and Becker, U. Quantum-Mechanical Determination of the Incorporation of Pentavalent Plutonium into Carbonate and Sulfate Minerals. (2019) Geochimica et Cosmochimica Acta. https://doi.org/10.1016/j.gca.2019.10.015
- Discipline:
- Science
-
- Creator:
- Liemohn, Michael W and Wooden, Paige
- Description:
- Journals sometimes focus the attention of the research community by having a special collection, sometimes an entire special issue, devoted to a single topic. A reasonable question to ask is whether the extra effort of organizing, promoting, and maintaining the special collection is worthwhile. The paper that this data set accompanies examines paper impact in the Journal of Geophysical Research Space Physics, separating the special collection papers from the non-special-collection submissions. The conclusion is that special collections are worth the extra work.
- Keyword:
- journal special collections, bibliometrics, citations, and downloads
- Citation to related publication:
- Liemohn, M. W., & Wooden, P. (2019). Editorial: Impact of special collections in JGR Space Physics. Journal of Geophysical Research Space Physics. https://doi.org/10.1002/essoar.10501036.2
- Discipline:
- Science
-
- Creator:
- Bougher, S. W. (CLaSP Department, U. of Michigan), Roeten, K. J. (CLaSP Department, U. of Michigan), and Sharrar, R. (Astronomy Department, U. of Michigan)
- Description:
- The NASA MAVEN (Mars Atmosphere and Volatile Evolution) spacecraft, which is currently in orbit around Mars, has been taking daily (systematic) measurements of the densities and temperatures in the upper atmosphere of Mars between about 140 to 240 km above the surface. Wind measurement campaigns are also conducted once per month for 5-10 orbits. These densities, temperatures and winds change with time (e.g. season, local time) and location, and sometimes fluctuate quickly. Global dust storm events are also known to significantly impact these density, temperature and wind fields in the Mars thermosphere. Such global dust storm period measurements can be compared to simulations from a computer model of the Mars atmosphere called M-GITM (Mars Global Ionosphere-Thermosphere Model), developed at U. of Michigan. This is the first detailed comparison between direct global dust storm period measurements in the upper atmosphere of Mars and simulated MGITM fields and is important because it can help to inform us what physical processes are acting on the upper atmosphere during such large dust events. Since the global circulation plays a role in the structure, variability, and evolution of the atmosphere, understanding the processes that drive the winds in the upper atmosphere of Mars also provides key context for understanding how the atmosphere behaves as a whole system. A basic version of the M-GITM code can be found on Github as follows: https:/github.com/dpawlows/MGITM and About 4 months of Neutral Gas and Ion Mass Spectrometer (NGIMS) measurements of densities and winds have been made by the MAVEN team during the summer of 2018 (Elrod et al., 2019). Nine reference measurement intervals during this global dust storm (1-June through 30-August 2018) are selected for detailed study (Elrod et al. 2019). The Mars conditions for these nine intervals have been used to launch corresponding M-GITM code simulations, yielding 3-D neutral density, temperature and wind fields for comparison to these NGIMS measurements. The M-GITM datacubes used to extract the density, temperature and neutral winds, along the trajectory of each orbit path between 140 and 240 km, are provided in this Deep Blue Data archive. README files are provided for each datacube, detailing the contents of each file. A general README file is also provided that summarizes the inputs and outputs of the M-GITM code simulations for this study.
- Keyword:
- Mars, MAVEN Spacecraft, Mars Thermosphere, and Mars Global Dust Storm of 2018
- Citation to related publication:
- Elrod, M. K., S. W. Bougher, K. Roeten, R. Sharrar, J. Murphy, Structural and Compositional Changes in the Upper Atmosphere related to the PEDE-2018 Dust Event on Mars as Observed by MAVEN NGIMS, Geophys. Res. Lett., (2019). doi: 10.1029/2019GL084378. and Jain, S. K., Bougher, S. W., Deighan, J., Schneider, N. M., Gonzalez‐Galindo, F., Stewart, A. I. F., et al. ( 2020). Martian thermospheric warming associated with the Planet Encircling Dust Event of 2018. Geophysical Research Letters, 47, e2019GL085302. https://doi.org/10.1029/2019GL085302
- Discipline:
- Engineering and Science
-
- Creator:
- Baskar, Deepika and Gorodetsky, Alex
- Description:
- Studying the effect of wind on urban air mobility typically requires comprehensive fluid dynamics simulations in a realistic urban geometry. Motivated to enable wide-spread autonomous drone activity in urban centers, such studies have indeed been considered by several authors in the recent literature. However, the accessibility of these approaches to those with less fluid dynamics experience and/or without access to purpose built simulation tools has limited validation and application of the resulting path planning strategies. and The .dat files contain the flow variables for each of the 402240 points sampled from the region under study. For flow visualization purposes, the .dat files are readable using Tecplot Software.
- Keyword:
- UAM, Energy efficient path planning , CFD, and City of Boston
- Citation to related publication:
- Baskar, D., & Gorodetsky, A. (2020). A Simulated Wind-field Dataset for Testing Energy Efficient Path-Planning Algorithms for UAVs in Urban Environment. In AIAA AVIATION 2020 FORUM. American Institute of Aeronautics and Astronautics. https://doi.org/10.2514/6.2020-2920
- Discipline:
- Other and Engineering
-
- Creator:
- Dulka, Eden A
- Description:
- This data is a subset of that originally produced as part of an effort to characterize GnRH neuron activity during prepubertal development in control and PNA mice and investigate the potential influences of sex and PNA treatment on this process (1). It was later used in (2) to further investigate the firing patterns of GnRH neurons in these categories of mice and determine how these patterns might differ based on age and treatment condition. The data files can be opened and examined using Wavemetric's Igor Pro software. Code used to further examine and visualize the data can be found at https://gitlab.com/um-mip/mc-project-code. This research was supported by National Institute of Health/Eunice Kennedy Shriver National Institute of Child Health and Human Development R01 HD34860 and P50 HD28934. (1) Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone (GnRH) neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3941-3953 (2) Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
- Keyword:
- action potential, Monte Carlo, polycystic ovary syndrome, puberty, and androgen
- Citation to related publication:
- Dulka EA, Moenter SM. Prepubertal development of gonadotropin-releasing hormone neuron activity is altered by sex, age and prenatal androgen exposure. Endocrinology 2017; 158:3943-3953. https://dx.doi.org/10.1210%2Fen.2017-00768 and Penix JJ, DeFazio RA, Dulka EA, Schnell S, Moenter SM. Firing patterns of gonadotropin-releasing hormone (GnRH) neurons are sculpted by their biology. Pending.
- Discipline:
- Health Sciences
-
- Creator:
- Allen, David N, Vandermeer, John, Dick, Christopher W, Perfecto, Ivette, and Burnham, Robyn J
- Description:
- These data are in the standard ForestGEO format. Each of the three censuses has its own text file. Within that file each row represents a stem measured in that census. Species information can be found in the species file. The personnel responsible for this work can be found in the personnel file. See the readme file for more information.
- Keyword:
- Forest ecology, Oak-hickory forest, Mesophication, and Invasive species
- Citation to related publication:
- Allen, D, CW Dick, RJ Burnham, I Perfecto, and J Vandermeer. The Michigan Big Woods research plot at the Edwin S. George Reserve, Pinckney, MI, USA. Occasional Papers of the Museum of Zoology. In review.
- Discipline:
- Science
-
- Creator:
- Moore, Talia Y., Danforth, Shannon M., Larson, Joanna G., and Davis Rabosky, Alison R.
- Description:
- Warning signals in chemically defended organisms are critical components of predator-prey interactions, often requiring multiple coordinated display components for a signal to be effective. When threatened by a predator, venomous coral snakes (genus Micrurus) display a vigorous, non-locomotory thrashing behaviour that has been only qualitatively described. Given the high-contrast and often colourful banding patterns of these snakes, this thrashing display is hypothesized to be a key component of a complex aposematic signal under strong stabilizing selection across species in a mimicry system. By experimentally testing snake response across simulated predator cues, we analysed variation in the presence and expression of a thrashing display across five species of South American coral snakes. Although the major features of the thrash display were conserved across species, we found significant variation in the propensity to perform a display at all, the duration of thrashing, and the curvature of snake bodies that was mediated by predator cue type, snake body size, and species identity. We also found an interaction between curve magnitude and body location that clearly shows which parts of the display vary most across individuals and species. Our results suggest that contrary to the assumption in the literature that all species and individuals perform the same display, a high degree of variation persists in thrashing behaviour exhibited by Micrurus coral snakes despite presumably strong selection to converge on a common signal. This quantitative behavioural characterization presents a new framework for analysing the non-locomotory motions displayed by snakes in a broader ecological context, especially for signalling systems with complex interaction across multiple modalities.
- Keyword:
- aposematism, biomechanics, coral snake mimicry, curvature, Elapidae, non-locomotory motion, Peruvian Amazon, and snake behaviour
- Citation to related publication:
- Moore, T. Y., Danforth, S. M., Larson, J. G., & Davis Rabosky, A. R. (2020). A Quantitative Analysis of Micrurus Coral Snakes Reveals Unexpected Variation in Stereotyped Anti-Predator Displays Within a Mimicry System. Integrative Organismal Biology, 2(1). https://doi.org/10.1093/iob/obaa006
- Discipline:
- Science
-
- Creator:
- Hodgins-Davis, Andrea, Duveau, Fabien, Walker, Elizabeth, and Wittkopp, Patricia J
- Description:
- Understanding how phenotypes evolve requires disentangling the effects of mutation generating new variation from the effects of selection filtering it. Tests for selection frequently assume that mutation introduces phenotypic variation symmetrically around the population mean, yet few studies have tested this assumption by deeply sampling the distributions of mutational effects for particular traits. Here, we examine distributions of mutational effects for gene expression in the budding yeast Saccharomyces cerevisiae by measuring the effects of thousands of point mutations introduced randomly throughout the genome. We find that the distributions of mutational effects differ for the ten genes surveyed and are inconsistent with normality. For example, all ten distributions of mutational effects included more mutations with large effects than expected for normally distributed phenotypes. In addition, some genes also showed asymmetries in their distribution of mutational effects, with new mutations more likely to increase than decrease the gene’s expression or vice versa. Neutral models of regulatory evolution that take these empirically determined distributions into account suggest that neutral processes may explain more expression variation within natural populations than currently appreciated.
- Keyword:
- gene expression, evolution, mutation, mutagenesis, regulatory evolution, YFP, reporter construct, yeast, TDH1, TDH2, TDH3, GPD1, OST1, PFY1, STM1, RNR1, and RNR2
- Citation to related publication:
- Hodgins-Davis, A., Duveau, F., Walker, E. A., & Wittkopp, P. J. (2019). Empirical measures of mutational effects define neutral models of regulatory evolution in Saccharomyces cerevisiae. BioRxiv, 551804. https://doi.org/10.1101/551804
- Discipline:
- Science
-
- Creator:
- Tronson, Natalie C and Tchessalova, Daria
- Description:
- The main goal of this research was to identify potential molecular pathways that contribute to memory dysregulation and decline that persists long after illness or inflammation. We have previously established a subchronic immune challenge model that results in memory impairments months after the inflammatory challenge. This project aimed to determine whether memory impairments were accompanied by transcriptional dysregulation in memory related brain region (the hippocampus). These data show the differential gene expression as log2fold change (and p-value) in males and females 3 months after immune challenge (Supp Tables 1 and 2); after a subsequent immune challenge (Supp Tables 3 and 4); the differential regulation of genes in males and females (Supp Table 5); genes differentially expressed in the hippocampus of males and females at baseline (Supp Table 6) and the differential regulation of those genes in males and females after immune challenge (Supp Tables 7,8).
- Keyword:
- hippocampus, lipopolysaccharide, differential gene expression, RNA sequencing, neuroimmune, sex differences, learning and memory, and inflammation
- Citation to related publication:
- Tchessalova, D., & Tronson, N. C. (2019). Enduring and sex-specific changes in hippocampal gene expression after a subchronic immune challenge. BioRxiv, 566570. https://doi.org/10.1101/566570
- Discipline:
- Science and Health Sciences
-
- Creator:
- Ridley, Aaron and Cnossen, Ingrid
- Description:
- These are modeling results of the thermospheric and ionospheric response to the solar eclipse of August 21, 2017. The results are discussed in a research paper published in the Journal of Geophysical Research (doi: 10.1029/2018JA026402) .
- Citation to related publication:
- Cnossen, I., Ridley, A. J., Goncharenko, L. P., and Harding, B. J.. ( 2019), The response of the ionosphere‐thermosphere system to the August 21, 2017 solar eclipse. J. Geophys. Res. Space Physics, 124. https://doi.org/10.1029/2018JA026402
- Discipline:
- Science
-
- Creator:
- Wang, Yi and Hendy, Ingrid L.
- Description:
- The dataset contains bulk sedimentary d15N, TOC, and TN data measured every 2 mm on the core SPR0901-03KC. Flood and turbidite layers are shaded with blue and orange in the files. and This work is supported by NSF OCE-1304327.
- Keyword:
- d15N, total organic carbon, nitrogen isotopes, SPR0901-03KC, and Santa Barbara Basin
- Citation to related publication:
- Wang, Y. , Hendy, I. L. and Thunell, R. (2019), Local and remote forcing of denitrification in the Northeast Pacific for the last 2000 years. Paleoceanography and Paleoclimatology. Volume 34, issue 8, pages 1517-1533. https://doi.org/10.1029/2019PA003577
- Discipline:
- Science
-
- Creator:
- Jialei Zhu and Joyce E. Penner
- Description:
- The dataset contains the Fortran programs applied in the latest CESM/IMPACT model as well as the data created from this model, which are used in the referenced paper.
- Keyword:
- Second organic aerosol, Radiative effect, and Cirrus cloud
- Citation to related publication:
- Zhu, J and Penner, J. E.: Indirect effects of secondary organic aerosol on cirrus clouds, (2019), Journal of Geophysical Research: Atmospheres, https://doi.org/10.1029/2019JD032233
- Discipline:
- Science
-
- Creator:
- Chen, Yang and Manchester, Ward IV
- Description:
- GOES_flare_list: contains a list of more than 10,000 flare events. The list has 6 columns, flare classification, active region number, date, start time end time, emission peak time, GOES_B_flare_list: contains time series data of SDO/HMI SHARP parameters for B class solar flares , GOES_MX_flare_list: contains time series data of SDO/HMI SHARP parameters for M and X class solar flares, SHARP_B_flare_data_300.hdf5 and SHARP_MX_flare_data_300.hdf5 files contain time series more than 20 physical variables derived from the SDO/HMI SHARP data files. These data are saved at a 12 minute cadence and are used to train the LSTM model., and B_HARPs_CNNencoded_part_xxx.hdf5 and M_X HARPs_CNNencoded_part_xxx.hdf5 include neural network encoded features derived from vector magnetogram images derived from the Solar Dynamics Observatory (SDO) Helioseismic and Magnetic Imager (HMI). These data files typically contains one or two sequences of magnetograms covering an active region for a period of 24h with a 1 hour cadence. We encode each magnetogram with frames of a fixed size of 8x16 with 512 channels.
- Keyword:
- machine learning, data science, and solar flare prediction
- Citation to related publication:
- Chen, Y., Manchester, W., Hero, A., Toth, G., DuFumier, B. Zhou, T., Wang, X., Zhu, H., Sun, Zeyu, Gombosi, T., Identifying Solar Flare Precursors Using Time Series of SDO/HMI Images and SHARP Parameters, Space Weather, 17, 1404–1426. https://doi.org/10.1029/2019SW002214 and Jiao, Z., Chen, Y., Manchester, W. (2020). Data for Solar Flare Intensity Prediction with Machine Learning Models [Data set]. University of Michigan - Deep Blue. https://doi.org/10.7302/b07j-bj08
- Discipline:
- Engineering and Science
-
- Creator:
- Liu, Y , Ettinger, AS, Téllez-Rojo, M, Sánchez, BN, Zhang, ZZ, Cantoral, A, and Hu, H
- Description:
- We used data collected from participants of the Early Life Exposures in Mexico to ENvironmental Toxicants (ELEMENT) study, which consists of three sequentially-enrolled birth cohorts of pregnant women. Research protocols of this study were approved by the Institutional Review Board at University of Michigan and the Mexico National Institute of Public Health. We obtained informed consent from mothers and informed assent from children prior to enrollment.
- Citation to related publication:
- Liu, Y., Ettinger, A. S., Téllez-Rojo, M., Sánchez, B. N., Zhang, Z., Cantoral, A., Hu, H., & Peterson, K. E. (2020). Prenatal Lead Exposure, Type 2 Diabetes, and Cardiometabolic Risk Factors in Mexican Children at Age 10–18 Years. The Journal of Clinical Endocrinology & Metabolism, 105(1), 210–218. https://doi.org/10.1210/clinem/dgz038
- Discipline:
- Health Sciences
-
- Creator:
- Linyan, Xiang and Oleg, Zikanov
- Description:
- The Liquid Metal Battery (LMB), a promising energy-storage device that contains liquid-metal interior, is studied numerically in the paper. The metal pad roll instability was modeled based on the open-source CFD software, OpenFOAM. It's based on the solver for simulations of incompressible multiphase flows multiphaseInterFoam modified to include the electromagnetic fields and account for the sharp variations of the electrical conductivity.
- Keyword:
- Liquid metal battery, Interfacial waves, Instability, and OpenFOAM
- Citation to related publication:
- Linyan Xiang (相林言) and Oleg Zikanov, “Numerical simulation of rolling pad instability in cuboid liquid metal batteries,” Physics of Fluids, vol. 31, no. 12, p. 124104, 2019, https://doi.org/10.1063/1.5123170 and Oleg Zikanov, "Shallow water modeling of rolling pad instability in liquid metal batteries." Theoretical and Computational Fluid Dynamics, 32, 325–347, 2018, https://doi.org/10.1007/s00162-018-0456-2
- Discipline:
- Science
-
- Creator:
- Huang, Yihe (University of Michigan); De Barros, Louis (Université Côte d’Azur)
- Description:
- Numerous small and moderate injection-induced earthquakes have been recorded in North America, Europe and Asia. Here we present a detailed analysis about microearthquakes in an in-situ injection-induced earthquake experiment, which provides an unprecedented opportunity to investigate the mechanisms of induced earthquakes. Our analysis illuminates meter-scale earthquake sources distributed in a network of preexisting rock fractures. The majority of induced earthquakes in our analysis happened when injection pressure reached a peak, indicating a direct response of rock fractures to fluid pressure perturbation. But the relatively low ratio of stress drop to crustal strength reveals that a very small fraction of the crustal shear strength is released by earthquakes, supporting the previous notion that fluid injection induces large aseismic deformation during the experiment. and Citation for dataset: Huang, Y., De Barros, L. (2019). Seismograms of earthquake pairs in the injection experiment [Data set]. University of Michigan - Deep Blue.
- Keyword:
- Induced seismicity
- Citation to related publication:
- Huang, Y., De Barros, L., Cappa, F. (2019). Illuminating the Rupturing of Microseismic Sources in an Injection‐Induced Earthquake Experiment. Geophysical Research Letters, 46(16), 9563-9572. https://doi.org/10.1029/2019GL083856
- Discipline:
- Science
-
- Creator:
- Hall, Ryan J. and Larson, Ronald G.
- Description:
- This is data is a large assortment of over 50 1,4-polybutadiene star-linear blends that can be used for assessing and developing predictive models. The data are presented in CSV files.
- Keyword:
- polymers, rheology, star-linear polymer blends, and shear rheology
- Citation to related publication:
- Hall, R., Desai, P. S., Kang, B.-G., Huang, Q., Lee, S., Chang, T., Venerus, D. C., Mays, J., Ntetsikas, K., Polymeropoulos, G., Hadjichristidis, N., & Larson, R. G. (2019). Assessing the Range of Validity of Current Tube Models through Analysis of a Comprehensive Set of Star–Linear 1,4-Polybutadiene Polymer Blends. Macromolecules, 52(20), 7831–7846. https://doi.org/10.1021/acs.macromol.9b00642
- Discipline:
- Science and Engineering
-
- Creator:
- Gainsburg, Izzy and Earl, Allison
- Description:
- This research explores trigger warnings as an interpersonal emotion-regulation strategy, introducing a temporal dimension to interpersonal emotion-regulation by regulating others' future, anticipated emotions. Across studies, believing that trigger warnings are protective (versus coddling) increased their effect on anticipated negative affect, but weakened their effect on experienced negative affect. Study 1 demonstrated that anticipated anxiety for warned-of content predicts intentions to avoid information. Furthermore, beliefs about trigger warnings as protective (versus coddling) best predicted anticipated anxiety for warned-of content and subsequent intentions to avoid. In Study 2, participants had higher anticipated negative affect for videos with trigger warnings, compared to those without, and this mediated increased avoidance for warned-of videos. In Study 3, trigger warnings preceding essays increased anticipated negative affect and attentional-regulation strategies, but reduced experiences of negative affect. For more information, please see the article Gainsburg, I., & Earl, A. (2018). Trigger warnings as an interpersonal emotion-regulation tool: Avoidance, attention, and affect depend on beliefs. Journal of Experimental Social Psychology, 79, 252–263. https://doi.org/10.1016/j.jesp.2018.08.006
- Citation to related publication:
- Gainsburg, I., & Earl, A. (2018). Trigger warnings as an interpersonal emotion-regulation tool: Avoidance, attention, and affect depend on beliefs. Journal of Experimental Social Psychology, 79, 252–263. https://doi.org/10.1016/j.jesp.2018.08.006
- Discipline:
- Social Sciences
-
- Creator:
- Burgin, Tucker and Mayes, Heather B.
- Description:
- This project aimed to discover and analyze the molecular mechanism of synthesis of two particular fucosylated oligosaccharide products in a mutant enzyme, Thermatoga maratima Alpha-L-Fucosidase D224G, whose wild type performs the opposite reaction (cleavage of fucosyl glycosidic bonds). Discovery of the mechanism was performed using an unbiased simulations method known as aimless shooting, whereas analysis of the mechanism in terms of the energy profile was performed using a separate method known as equilibrium path sampling. The data here concerns the latter method. and The contents of the atesa_master.zip are the ATESA GitHub project. A Python program for automating transition path sampling with aimless shooting using Amber. https://github.com/team-mayes/atesa
- Keyword:
- Equilibrium Path Sampling, Transition Path Sampling, Enzymatic Mechanism, and GH29
- Citation to related publication:
- Burgin, T., & Mayes, H. B. (2019). Mechanism of oligosaccharide synthesis via a mutant GH29 fucosidase. Reaction Chemistry & Engineering, 4(2), 402–409. https://doi.org/10.1039/C8RE00240A
- Discipline:
- Engineering
-
- Creator:
- Lim, Hongki and Dewaraja, Yuni K.
- Description:
- Internally administered targeted radionuclide therapy (TRT) with radio-labelled targeting molecules that deliver cytotoxic radiation to tumor has been used successfully to treat multiple cancers. Lu-177, used increasingly in TRT, emits both beta particles that deliver the therapeutic effect. FDA recently approved a fixed activity (4 cycles of 7.4 GBq/cycle as in NETTER -1) administered every 8 weeks. With the patient studies under this treatment, we collected CT images and corresponding volume of interest (organs, lesions) contours.
- Keyword:
- Lu-177, CT, Segmentation, Organ, Tumor, Label
- Discipline:
- Health Sciences
-
- Creator:
- Basile, Samantha, Lin, Xin, and Keppel-Aleks, Gretchen
- Description:
- Files contain the atmospheric CO2 mole fraction responses to land flux type (HRcasa, HRcorpse, HRmimics) and land flux region (latband variable). Land flux regions are categorized as: Northern Hemisphere high latitudes (NHL; 61 to 90°N), midlatitudes (NML; 24 to 60°N), tropics (NT; 1 to 23°N), Southern Hemisphere tropics (ST; 0 to 23°S), and extratropics (SE; 24 to 90°S). See the README file for how these land flux region definitions relate to the file's latband variable. and To cite dataset: Basile, S., Lin, X., Keppel-Aleks, G. (2019). Simulated CO2 dataset using the atmospheric transport model GEOSChem v12.0.0: Response to regional land carbon fluxes [Data set]. University of Michigan - Deep Blue. https://doi.org/10.7302/xjzc-xy05
- Keyword:
- carbon dioxide, soil heterotrophic respiration, GEOSChem, HR, CO2, CASA-CNP, CORPSE, and MIMICS
- Discipline:
- Science
-
- Creator:
- Zhu, Jialei and Penner, Joyce E.
- Description:
- The dataset contains the Fortran programs applied in the latest CESM/IMPACT model as well as the data created from this model, which are used in the referenced paper.
- Keyword:
- Organic nucleation, CESM/IMPACT, and SOA
- Citation to related publication:
- Zhu, J. and Penner, J. E.: Global modelling of secondary organic aerosol (SOA) with organic nucleation, (2019), Journal of Geophysical Research: Atmospheres, 124, 8260– 8286, https://doi.org/10.1029/2019JD030414
- Discipline:
- Science
-
- Creator:
- dos Santos, Thiago, Steiner, Allison, Keppel-Aleks, Gretchen, and De Roo, Roger
- Description:
- Model simulations were conducted to investigate the role of soil moisture on the terrestrial carbon and water cycles. The data are composed of NetCDF files generated by the simulations that contain the data variables analyzed in the paper. and CLM5 Documentation - http://www.cesm.ucar.edu/models/cesm2/land/.
- Keyword:
- Soil moisture, Community Land Model 5, Latent heat, GPP, Gross primary productivity, and Fluxnet
- Citation to related publication:
- Santos, T. dos, Keppel-Aleks, G., Roo, R. D., & Steiner, A. L. (2021). Can Land Surface Models Capture the Observed Soil Moisture Control of Water and Carbon Fluxes in Temperate-To-Boreal Forests? Journal of Geophysical Research: Biogeosciences, 126(4), e2020JG005999. https://doi.org/10.1029/2020JG005999
- Discipline:
- Science
-
- Creator:
- Xu, Xuecong, Yan, Xiang , and Dillahunt, Tawanna R.
- Description:
- We compared the response rates, cost, and the average income of participants pertaining to 6 different survey distribution methods used in an initial study about mobility-on-demand services. We used the data to identify survey and recruitment methods that are more effective in reaching hard-to-reach populations. All the raw data used for calculations and the calculations themselves can be found in the attached spreadsheets. and Initial analyses have identified in-person onsite recruitment as one of the better methods of reaching hard-to-reach populations, and is calling for continued work in improving research methods in the field of HCI.
- Keyword:
- survey
- Citation to related publication:
- Yan, X., Zhao, X., Han, Y., and Hentenryck, P. V. (2019). Mobility-on-demand versus fixed-route transit systems: an evaluation of traveler preferences in low-income communities. https://poverty.umich.edu/files/2019/02/Yan_et_al_WorkingPaper_Preference_for_mobility_on_demand.pdf , Atkinson, R., and Flint, J. Accessing Hidden and Hard-to-Reach Populations: Snowball Research Strategies. "Social Research Update" 33 (Jan 2001)., Buranyi, S. Rise of the racist robots: how ai is learning all our worst impulses, Aug 2017. Retrieved June 11, 2019 from https://www.theguardian.com/inequality/2017/aug/08/rise-of-the-racist-robots-how-ai-is-learning-all-our-worst-impulses., Dillahunt, T. R., Erete, S., Galusca, R., Israni, A., Nacu, D., and Sengers, P. Reflections on design methods for underserved communities. In Companion of the 2017 ACM Conference on Computer Supported Cooperative Work and Social Computing (New York, NY, USA, 2017), CSCW ’17 Companion, ACM, pp. 409–413., Erete, S., Israni, A., and Dillahunt, T. An intersectional approach to designing in the margins. Interactions 25, 3 (Apr. 2018), 66–69., Foster, A. Concerning issue with driverless cars, Mar 2019. Retrieved June 11, 2019 from https://www.news.com.au/technology/innovation/motoring/on-the-road/driverless-cars-may-be-more-likely-to-hit-darkskinned-people-study-finds/news-story/b19959d01ef865f15bb336275b8903e8., Johnston, L. G., and Sabin, K. Sampling hard-to-reach populations with respondent driven sampling. Methodological Innovations Online 5, 2 (aug 2010), 38.1–48., Macaulay, A. C., Commanda, L. E., Freeman, W. L., Gibson, N., McCabe, M. L., Robbins, C. M., and Twohig, P. L. Participatory research maximises community and lay involvement. BMJ 319, 7212 (sep 1999), 774–778., Maestre, J. F., Eikey, E. V., Warner, M., Yarosh, S., Pater, J., Jacobs, M., Marcu, G., and Shih, P. C. Conducting research with stigmatized populations: Practices, challenges, and lessons learned. In Companion of the 2018 ACM Conference on Computer Supported Cooperative Work and Social Computing (2018), ACM, pp. 385–392., Paterson, J. M., and Maker, Y. Why does artificial intelligence discriminate?, Jun 2019. Retrieved June 11, 2019 from https://pursuit.unimelb.edu.au/articles/why-does-artificial-intelligence-discriminate., Strohmayer, A., Laing, M., and Comber, R. Technologies and social justice outcomes in sex work charities: fighting stigma, saving lives. In Proceedings of the 2017 CHI Conference on Human Factors in Computing Systems (2017), ACM, pp. 3352–3364., and Sydor, A. Conducting research into hidden or hard-to-reach populations. Nurse researcher 20, 3 (2013).
- Discipline:
- General Information Sources
-
- Creator:
- Bowen Li, Yiling Zhang, Siqian Shen, and Johanna Mathieu
- Description:
- The project outputs summarize all the publications, talks, and codes we accomplished under this NSF funding. In the project, we develop methodologies to manage uncertainty in future electric power systems and quantify how uncertainty affects power system sustainability. and Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149653
- Keyword:
- chance constraint, distributionally robust optimization, optimal power flow, demand response, and unimodality
- Citation to related publication:
- B. Li and J. L. Mathieu, "Analytical reformulation of chance-constrained optimal power flow with uncertain load control," 2015 IEEE Eindhoven PowerTech, Eindhoven, 2015, pp. 1-6. https://doi.org/10.1109/PTC.2015.7232803, B. Li, J. L. Mathieu and R. Jiang, "Distributionally Robust Chance Constrained Optimal Power Flow Assuming Log-Concave Distributions," 2018 Power Systems Computation Conference (PSCC), Dublin, 2018, pp. 1-7. https://doi.org/10.23919/PSCC.2018.8442927, B. Li, M. Vrakopoulou and J. L. Mathieu, "Chance Constrained Reserve Scheduling Using Uncertain Controllable Loads Part II: Analytical Reformulation," in IEEE Transactions on Smart Grid, vol. 10, no. 2, pp. 1618-1625, March 2019. https://doi.org/10.1109/TSG.2017.2773603, B. Li, R. Jiang and J. L. Mathieu, "Distributionally Robust Chance-Constrained Optimal Power Flow Assuming Unimodal Distributions With Misspecified Modes," in IEEE Transactions on Control of Network Systems, vol. 6, no. 3, pp. 1223-1234, Sept. 2019. https://doi.org/10.1109/TCNS.2019.2930872, B. Li, R. Jiang and J. L. Mathieu, "Distributionally robust risk-constrained optimal power flow using moment and unimodality information," 2016 IEEE 55th Conference on Decision and Control (CDC), Las Vegas, NV, 2016, pp. 2425-2430. https://doi.org/10.1109/CDC.2016.7798625, B. Li, S. D. Maroukis, Y. Lin and J. L. Mathieu, "Impact of uncertainty from load-based reserves and renewables on dispatch costs and emissions," 2016 North American Power Symposium (NAPS), Denver, CO, 2016, pp. 1-6. https://doi.org/10.1109/NAPS.2016.7747830, G. Martínez, J. Liu, B. Li, J. L. Mathieu and C. L. Anderson, "Enabling renewable resource integration: The balance between robustness and flexibility," 2015 53rd Annual Allerton Conference on Communication, Control, and Computing (Allerton), Monticello, IL, 2015, pp. 195-202. https://doi.org/10.1109/ALLERTON.2015.7447004, J. Liu, M. G. Martinez, B. Li, J. Mathieu and C. L. Anderson, "A Comparison of Robust and Probabilistic Reliability for Systems with Renewables and Responsive Demand," 2016 49th Hawaii International Conference on System Sciences (HICSS), Koloa, HI, 2016, pp. 2373-2380. https://doi.org/10.1109/HICSS.2016.297, Li, B., Jiang, R. & Mathieu, J.L. "Ambiguous risk constraints with moment and unimodality information." Math. Program. 173, 151–192 (2019). https://doi.org/10.1007/s10107-017-1212-x, M. Vrakopoulou, B. Li and J. L. Mathieu, "Chance Constrained Reserve Scheduling Using Uncertain Controllable Loads Part I: Formulation and Scenario-Based Analysis," in IEEE Transactions on Smart Grid, vol. 10, no. 2, pp. 1608-1617, March 2019. https://doi.org/10.1109/TSG.2017.2773627, Y. Zhang, S. Shen and J. L. Mathieu, "Data-driven optimization approaches for optimal power flow with uncertain reserves from load control," 2015 American Control Conference (ACC), Chicago, IL, 2015, pp. 3013-3018. https://doi.org/10.1109/ACC.2015.7171795, Y. Zhang, S. Shen and J. L. Mathieu, "Distributionally Robust Chance-Constrained Optimal Power Flow With Uncertain Renewables and Uncertain Reserves Provided by Loads," in IEEE Transactions on Power Systems, vol. 32, no. 2, pp. 1378-1388, March , and Y. Zhang, S. Shen, B. Li and J. L. Mathieu, "Two-stage distributionally robust optimal power flow with flexible loads," 2017 IEEE Manchester PowerTech, Manchester, 2017, pp. 1-6. https://doi.org/10.1109/PTC.2017.7981202
- Discipline:
- Engineering
-
- Creator:
- Wang, Zihan
- Description:
- SWMF is used to study the segmentation of SED plume into polar cap patches during the geomagnetic storm on Sep 7, 2017. The database includes the 3D output in the upper atmosphere from GITM, the 2D output from Ionospheric Electrodynamics (IE) and 3D output from BATSRUS. The output from GITM can be read with thermo_batch_new.pro. The output from IE can be opened with Spacepy at https://pythonhosted.org/SpacePy/. The output from BATSRUS can be opened with tecplot. More details can be found in Readme.txt.
- Keyword:
- MHD and Ionosphere
- Citation to related publication:
- Wang, Z., Zou, S., Coppeans, T., Ren, J., Ridley, A., & Gombosi, T. (2019). Segmentation of SED by Boundary Flows Associated With Westward Drifting Partial Ring current. Geophysical Research Letters, 46(14), 7920–7928. https://doi.org/10.1029/2019GL084041
- Discipline:
- Science
-
- Creator:
- Yao, Mengqi, Mathieu, Johanna L., Hiskens, Ian A., Molzahn, Daniel K., Koorehdavoudi, Kasra , and Roy, Sandip
- Description:
- The files include all the published paper and presentation source codes. Please install Matpower before running the code. The Matpower version is 5.1, which can be found in https://matpower.org/download/ Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/150104
- Keyword:
- Demand response, Optimal power flow, Power system voltage stability, and Power system small signal stability L
- Citation to related publication:
- Yao, M., Molzahn, D. K., & Mathieu, J. L. (2019). An Optimal Power-Flow Approach to Improve Power System Voltage Stability Using Demand Response. IEEE Transactions on Control of Network Systems, 6(3), 1015–1025. https://doi.org/10.1109/TCNS.2019.2910455, Yao, M., Mathieu, J. L., & Molzahn, D. K. (2017). Using demand response to improve power system voltage stability margins. 2017 IEEE Manchester PowerTech, 1–6. https://doi.org/10.1109/PTC.2017.7980798 , Koorehdavoudi, K., Yao, M., & Mathieu, J. (2017). Using Demand Response to Shape the Fast Dynamics of the Bulk Power Network. https://www.semanticscholar.org/paper/Using-Demand-Response-to-Shape-the-Fast-Dynamics-of-Koorehdavoudi-Yao/6799c161744c29e7603e3601daa284ecc84788a8, Yao, M., Hiskens, I. A., & Mathieu, J. L. (2018). Improving Power System Voltage Stability by Using Demand Response to Maximize the Distance to the Closest Saddle-Node Bifurcation. 2018 IEEE Conference on Decision and Control (CDC), 2390–2395. https://doi.org/10.1109/CDC.2018.8619091 , and Yao, M., Molzahn, D. K., & Mathieu, J. L. (2017). The impact of load models in an algorithm for improving voltage stability via demand response. 2017 55th Annual Allerton Conference on Communication, Control, and Computing (Allerton), 149–156. https://doi.org/10.1109/ALLERTON.2017.8262731
- Discipline:
- Engineering
-
- Creator:
- Trung, Huy-Sinh, Liemohn, Michael W, and Ilie, Raluca
- Description:
- This research is from the last time step of a 12 hour simulation. The files that are attached with this simulation require the raw data from (doi:10.7302/fwq2-ey41). The python files generate various plots for the paper.
- Keyword:
- Space Physics, Magnetospheres, and Magnetohydrodynamics
- Citation to related publication:
- Trung, H.-S., Liemohn, M. W., & Ilie, R. (2019). Steady State Characteristics of the Terrestrial Geopauses. Journal of Geophysical Research: Space Physics, 124(7), 5070–5081. https://doi.org/10.1029/2019JA026636
- Discipline:
- Science
-
- Creator:
- Ledva, Gregory S., Zhe, Du, Peterson, Sarah, Balzano, Laura, and Mathieu, Johanna L.
- Description:
- This is the code that resulted from NSF grant ECCS-1508943, "Inferring the behavior of distributed energy resources from incomplete measurements." The project focused on developing control, estimation, and modeling methods for residential demand response and electric distribution networks. The talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149480
- Keyword:
- online learning, energy disaggregation, residential demand response, networked control, Kalman filter, and frequency regulation
- Citation to related publication:
- Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Inferring the behavior of distributed energy resources with online learning." 2015 53rd Annual Allerton Conference on Communication, Control, and Computing (Allerton). IEEE, 2015. https://doi.org/10.1109/ALLERTON.2015.7447003, Ledva, Gregory S., and Johanna L. Mathieu. "A linear approach to manage input delays while supplying frequency regulation using residential loads." 2017 American Control Conference (ACC). IEEE, 2017. https://doi.org/10.23919/ACC.2017.7963041, Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Exploring Connections Between a Multiple Model Kalman Filter and Dynamic Fixed Share with Applications to Demand Response." 2018 IEEE Conference on Control Technology and Applications (CCTA). IEEE, 2018. https://doi.org/10.1109/CCTA.2018.8511493, Ledva, Gregory S., et al. "Disaggregating Load by Type from Distribution System Measurements in Real Time." Energy Markets and Responsive Grids. Springer, New York, NY, 2018. 413-437. https://doi.org/10.1007/978-1-4939-7822-9_17, Ledva, Gregory S., Sarah Peterson, and Johanna L. Mathieu. "Benchmarking of Aggregate Residential Load Models Used for Demand Response." 2018 IEEE Power & Energy Society General Meeting (PESGM). IEEE, 2018. https://doi.org/10.1109/PESGM.2018.8585847, Ledva, Gregory S., et al. "Managing communication delays and model error in demand response for frequency regulation." IEEE Transactions on Power Systems 33.2 (2018): 1299-1308. https://doi.org/10.1109/TPWRS.2017.2725834, Ledva, Gregory S., Laura Balzano, and Johanna L. Mathieu. "Real-time energy disaggregation of a distribution feeder's demand using online learning." IEEE Transactions on Power Systems 33.5 (2018): 4730-4740. https://doi.org/10.1109/TPWRS.2018.2800535, and Talks, papers, and poster in Deep Blue: http://hdl.handle.net/2027.42/149480
- Discipline:
- Engineering
-
- Creator:
- Johnson, Jena E., Webb, Samuel M., Condit, Cailey B., Beukes, Nicolas J., and Fischer, Woodward W.
- Description:
- Manganese in the sedimentary record has been interpreted by many as a powerful redox proxy for paleoenvironments, and yet very little work has been done to ensure that the manganese-rich minerals in the rock record are actually recording primary signals. In the accompanying manuscript, we present an in-depth characterization of the manganese mineralogy from two correlated regions recording the Transvaal Supergroup in South Africa with markedly different alteration histories to investigate if there can be post-depositional emplacement of manganese-rich minerals. The data uploaded here are X-ray absorption spectra of (1) manganese standard minerals that were useful in our analyses and (2) minerals from an important well-characterized sample that may be useful as comparative standards in future studies.
- Keyword:
- manganese and X-ray absorption spectroscopy
- Citation to related publication:
- J.E. Johnson, S.M. Webb, C.B. Condit, N.J. Beukes, W.W. Fischer; Effects of metamorphism and metasomatism on manganese mineralogy: Examples from the Transvaal Supergroup. South African Journal of Geology doi: https://doi.org/10.25131/sajg.122.0034
- Discipline:
- Science
-
- Creator:
- Ruas, Terry, Ferreira, Charles H. P., Grosky, William, França, Fabrício O., and Medeiros, Débora M. R,
- Description:
- The relationship between words in a sentence often tell us more about the underlying semantic content of a document than its actual words, individually. Recent publications in the natural language processing arena, more specifically using word embeddings, try to incorporate semantic aspects into their word vector representation by considering the context of words and how they are distributed in a document collection. In this work, we propose two novel algorithms, called Flexible Lexical Chain II and Fixed Lexical Chain II that combine the semantic relations derived from lexical chains, prior knowledge from lexical databases, and the robustness of the distributional hypothesis in word embeddings into a single decoupled system. In short, our approach has three main contributions: (i) unsupervised techniques that fully integrate word embeddings and lexical chains; (ii) a more solid semantic representation that considers the latent relation between words in a document; and (iii) lightweight word embeddings models that can be extended to any natural language task. Knowledge-based systems that use natural language text can benefit from our approach to mitigate ambiguous semantic representations provided by traditional statistical approaches. The proposed techniques are tested against seven word embeddings algorithms using five different machine learning classifiers over six scenarios in the document classification task. Our results show that the integration between lexical chains and word embeddings representations sustain state-of-the-art results, even against more complex systems. Github: https://github.com/truas/LexicalChain_Builder
- Keyword:
- document classification, lexical chains, word embeddings, synset embeddings, chain2vec, and natural language processing
- Citation to related publication:
- Terry Ruas, Charles Henrique Porto Ferreira, William Grosky, Fabrício Olivetti de França, Débora Maria Rossi de Medeiros, "Enhanced word embeddings using multi-semantic representation through lexical chains", Information Sciences, 2020, https://doi.org/10.1016/j.ins.2020.04.048
- Discipline:
- Other, Science, and Engineering
-
- Creator:
- Sweetland Center for Writing
- Description:
- The writing samples included in this folder were collected as part of a longitudinal study in writing development published in Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). Writing samples were chosen and uploaded by students as part of the study and come from lower and upper level courses. To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890.
- Keyword:
- writing, writing sample, and developing writers
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890 and This data set is related to "Developing Writers: Interview Transcripts" available at: https://deepblue.lib.umich.edu/data/concern/data_sets/sn009x784?locale=en
- Discipline:
- Humanities
-
- Creator:
- Sweetland Center for Writing
- Description:
- The interviews included in this folder were conducted as part of a longitudinal study in writing development published in Developing Writers in Higher Education: A Longitudinal Study (University of Michigan Press, 2019). Interviews were conducted upon students' entry into the study (files labelled "entry") and exit from the study (files labelled "exit"). To learn more about this study, please see the epublication https://doi.org/10.3998/mpub.10079890 and the website https://www.developingwritersbook.org/pages/about/about-the-study/.
- Keyword:
- interview, transcript, and developing writers
- Citation to related publication:
- GERE, A. R. (Ed.). (2019). DEVELOPING WRITERS IN HIGHER EDUCATION: A longitudinal study. S.l.: UNIV OF MICHIGAN PRESS. https://doi.org/10.3998/mpub.10079890 and This data set is related to "Developing Writers: Writing Samples" available at: https://deepblue.lib.umich.edu/data/concern/data_sets/r207tp36h?locale=en
- Discipline:
- Humanities
-
- Creator:
- Ruas, Terry, Grosky, William, and Aizawa, Akiko
- Description:
- This data set is a collection of word similarity benchmarks (RG65, MEN3K, Wordsim 353, simlex999, SCWS, yp130, simverb3500) in their original format and converted into a cosine similarity scale. In addition, we have two Wikpedia Dumps from 2010 (April) and 2018 (January) in which we provide the original format (raw words), converted using the techniques described in the paper (MSSA, MSSA-D and MSSA-NR) (title in this repository), and also the word embeddings models for 300d and 1000d using a word2vec implementation. A readme.txt is provided with more details for each file.
- Keyword:
- multi-sense embeddings, MSSA, word2vec, wikipedia dump, synset, and natural language processing
- Citation to related publication:
- https://doi.org/10.1016/j.eswa.2019.06.026
- Discipline:
- Other
-
- Creator:
- Meurer, William
- Description:
- SPSS is required to access processed dataset in .sav format. Model output is provided as a word document, and Qualtrics survey instrument is included as PDF and .docx, where .docx version contains survey logic and question numbers.
- Keyword:
- Diagnostic Testing, Emergency Medicine, and Financial Incentives
- Citation to related publication:
- Iyengar, R., Winkels, J., Smith, C. M., Meka, A. P., MD, Porath, J. D., MD, & Meurer, W. J., MD, MS. (2019, January 21). The Effect of Financial Incentives on Patient Decisions to Undergo Low-Value Head CT Scans. https://doi.org/10.31219/osf.io/4mdfw
- Discipline:
- Health Sciences
-
- Creator:
- Hongyang Zhou
- Description:
- The outputs include the steady state solutions for all Galileo flybys, the particle information for plotting the distribution functions near the reconnection site, the particle and field data for mapping the energetic flux densities, and 3D files for visualizing the whole simulation domain. More details can be found in Readme.txt.
- Keyword:
- MHD and PIC
- Citation to related publication:
- Zhou, H., Tóth, G., Jia, X., Chen, Y., & Markidis, S. (2019). Embedded kinetic simulation of Ganymede's magnetosphere: Improvements and inferences. Journal of Geophysical Research: Space Physics, 124, 5441– 5460. https://doi.org/10.1029/2019JA026643
- Discipline:
- Science
-
- Creator:
- Siegel, Jason B. , Stefanopoulou, Anna G., and McKahn, Denise (McKay)
- Description:
- This section contains work related to the modeling of voltage degradation in a 24 cell PEM fuel cell stack with 300 cm2 cross-sectional area. The experimental hardware used to validate the model consists of a computer controlled system that coordinates air, hydrogen, cooling, and electrical subsystems to operate the stack. Dry hydrogen is pressure regulated for full utilization in the dead-ended anode. Using a solenoid valve, the anode is periodically purged to recover the gradual degradation in voltage. A membrane based humidifier controls the vapor content of the cathode gas stream while a mass flow controller is used to regulate the flow to the desired stoichiometry.
- Citation to related publication:
- Denise A. McKay, Jason B. Siegel, William Ott, and Anna G. Stefanopoulou. Parameterization and prediction of temporal fuel cell voltage behavior during flooding and drying conditions. Journal of Power Sources, 178(1):207 - 222, 2008. https://doi.org/10.1016/j.jpowsour.2007.12.031
- Discipline:
- Engineering
-
- Creator:
- Nasser, Ahmad and Gumise, Wonder
- Description:
- The work on accelerating authenticated boot for embedded system resulted in designing an algorithm in python to perform the random address generation and cryptographic MAC calculation. The Sampled Boot schemes implemented in this package allow a significant reduction of the time needed to authenticate firmware images during startup, while still retaining a high degree of trust. This is particularly useful for automotive applications in which startup time constraints make secure boot a time prohibitive process. and Citation for this dataset: Nasser, A., Gumise, W. (2019). Authenticated Boot Acceleration Algorithm [Code and data]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/yeh1-1x17
- Keyword:
- Trusted Computing, IOT security, Embedded Security, and Cyber Physical Systems
- Citation to related publication:
- Nasser, A., Gumise, W., and Ma, D., "Accelerated Secure Boot for Real-Time Embedded Safety Systems," SAE Int. J. Transp. Cyber. & Privacy 2(1) : 35-48, 2019, https://doi.org/10.4271/11-02-01-0003
- Discipline:
- Science
-
- Creator:
- Trung, Huy-Sinh, Liemohn, Michael W, and Ilie, Raluca
- Description:
- The goal of this research was to understand structures where the solar wind plasma contribution to the total plasma was equal to the ionospheric plasma. This simulation was performed over a simulation time of 12 hours for 4 different plasma compositions for 2 different solar wind profiles., The SWMF used the Block Adaptive Tree Solar wind Roe-type Upwind Scheme version 9.20. It can be found at http://csem.engin.umich.edu/tools/swmf/downloads.php. These data can be processed using the simulation code deposited at the Deep Blue Data record indicated in the "Citation to related material" field., and To cite this data set: Trung, H.-S., Liemohn, M., W., Ilie, R. (2019). 12 hour data for magnetospheric simulations for a multifluid plasma for 8 different configurations [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/fwq2-ey41
- Keyword:
- Space Physics, Magnetospheres, and 3D
- Citation to related publication:
- Trung, H.-S., Liemohn, M.W. Ilie, R. (2019). Steady State Characteristics of the Terrestrial Geopause [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/7w13-kq27
- Discipline:
- Science
-
R/V Melville Core Retrieval Campaign (MV0811), November 2008
User Collection- Creator:
- Wang, Yi and Hendy, Ingrid
- Description:
- This collection represents various raw data and analysis of cores extracted during the November 2008 mission of R/V Melville in the Santa Barbara Basin., The core included is the jumbo piston core MV0811-14JC. Core photos, physical properties and magnetic susceptibility from the multisensor track (MST), and the scanning X-ray fluorescence (XRF) data are included in the collection., and Cruise DOI: 10.7284/903459 The research is funded by NSF OCE-1304327.
- Keyword:
- Santa Barbara Basin, Southern California, core photos, physical properties, scanning XRF, MV0811, and Earth Science
- Discipline:
- Science
3Works -
- Creator:
- Crisp, Dakota N., Cheung, Warwick, Gliske, Stephen V., Lai, Alan, Freestone, Dean R., Grayden, David B., Cook, Mark J., and Stacey, William C.
- Description:
- The data and the scripts are to show that seizure onset dynamics and evoked responses change over the progression of epileptogenesis defined in this intrahippocampal tetanus toxin rat model. All tests explored in this study can be repeated with the data and scripts included in this repository. and Dataset citation: Crisp, D.N., Cheung, W., Gliske, S.V., Lai, A., Freestone, D.R., Grayden, D.B., Cook, MJ., Stacey, W.C. (2019). Epileptogenesis modulates spontaneous and responsive brain state dynamics [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/r6vg-9658
- Keyword:
- evoked response, stimulation, bifurcation, epilepsy, seizure, divergence, and dynamics
- Citation to related publication:
- Crisp, D. N., Cheung, W., Gliske, S. V., Lai, A., Freestone, D. R., Grayden, D. B., Cook, M. J., & Stacey, W. C. (2020). Quantifying epileptogenesis in rats with spontaneous and responsive brain state dynamics. Brain Communications, 2(1). https://doi.org/10.1093/braincomms/fcaa048
- Discipline:
- Science, Engineering, and Health Sciences
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for SPR0901-04BC (34.2816°N, 120.0415°W, 588 m water depth) measured on the multisensor track (MST). SPR0901-04BC was collected by the research vessel R/V Sproul off Southern California in 2009.1. The study is supported by NSF OCE-0752093.
- Keyword:
- physical properties, magnetic susceptibility, Santa Barbara Basin, and SPR0901-04BC
- Citation to related publication:
- "Recover MT Receivers offshore Morro Bay/Deploy and Recover EM Sensor in the San Diego Trough." Cruise ID: SP0901. 2009. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/901085
- Discipline:
- Science
-
- Creator:
- Folz, Jeff
- Description:
- This data set includes four zipped files each containing unprocessed cell images from a single cell line collected as raw data, the scripts used to process these images and tabular files with the processed data outputs. This data set supports the PLOS ONE publication, "Cell-morphodynamic phenotype classification with application to cancer metastasis using cell magnetorotation and machine-learning."
- Discipline:
- Science
-
- Creator:
- Crisp, Dakota N., Saggio, Maria L., Scott, Jared, Stacey, William C., Nakatani, Mitsuyoshi, Gliske, Stephen V., and Lin, Jack
- Description:
- This data and scripts are meant to test and show seizure differentiation based on bifurcation theory. A zip file is included which contains real and simulated seizure waveforms, Matlab scripts, and metadata. The matlab scripts allow for visual review validation and objective feature analysis. The file “README.txt” provides more detail about each individual file within the zip file. and Data citation: Crisp, D.N., Saggio, M.L., Scott, J., Stacey, W.C., Nakatani, M., Gliske, S.F., Lin, J. (2019). Epidynamics: Navigating the map of seizure dynamics - Code & Data [Data set]. University of Michigan Deep Blue Data Repository. https://doi.org/10.7302/ejhy-5h41
- Keyword:
- Bifurcation, Epilepsy, Seizure, and Divergence
- Citation to related publication:
- Saggio, M.L., Crisp, D., Scott, J., Karoly, P.J., Kuhlmann, L., Nakatani, M., Murai, T., Dümpelmann, M., Schulze-Bonhage, A., Ikeda, A., Cook, M., Gliske, S.V., Lin, J., Bernard, C., Jirsa, V., Stacey, W., 2020. In pre-print. Epidynamics characterize and navigate the map of seizure dynamics. bioRxiv 2020.02.08.940072. https://doi.org/10.1101/2020.02.08.940072
- Discipline:
- Engineering, Science, and Health Sciences
-
- Creator:
- Mitchell, R.L. and Sheldon, Nathan D.
- Description:
- Samples from a road cut section were analyzed. New paleosols were discovered.
- Keyword:
- Paleosols, Precambrian, Keweenawan, Paleoenvironments, and Midcontinental Rift
- Citation to related publication:
- Mitchell, R.L., Sheldon, N.D., 2009, Weathering and paleosol formation in the 1.1. Ga Keweenawan Rift: Precambrian Research 168, p. 271–283. https://doi.org/10.1016/j.precamres.2008.09.013
- Discipline:
- Science
-
- Creator:
- Cotton, Jennifer M. and Sheldon, Nathan D.
- Description:
- These spreadsheets contain all data and data by diet type, meat consumption, gender, and British comparison for the classroom activity described in the accompanying paper.
- Keyword:
- Sustainable agriculture , Active learning, Stable isotopes, and Large enrollment
- Citation to related publication:
- Cotton, J.M., and Sheldon, N.D., 2013, Using stable carbon and nitrogen isotopes of hair to teach about sustainable agriculture through active learning: Journal of Geoscience Education 61, 59–67. https://doi.org/10.5408/12-309.1
- Discipline:
- Science
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes scanning X-ray fluorescence (XRF) data for the core MV0811-14JC (34.2818°N 120.0360°W, water depth: 582 m), which was collected by the research vessel R/V Melville off Southern California in 2008.11. The research is funded by NSF OCE-1304327.
- Keyword:
- scanning X-ray fluorescence, XRF, Santa Barbara Basin, and MV0811-14JC
- Citation to related publication:
- "BOLT Expedition, Leg 2/A Test for Extending the High-Resolution Climate Record Back to 1.2 Ma." Cruise ID: BOLT02MV. 2008. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/903459
- Discipline:
- Science
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes scanning X-ray fluorescence (XRF) data for the core SPR0901-03KC (34.2832°N, 120.0401°W, 586 m water depth). SPR0901-03KC was collected by the research vessel R/V Sproul off Southern California in 2009.1. The research is funded by NSF OCE-0752093.
- Keyword:
- scanning X-ray fluorescence, XRF, Santa Barbara Basin, and SPR0901-03KC
- Citation to related publication:
- "Recover MT Receivers offshore Morro Bay/Deploy and Recover EM Sensor in the San Diego Trough." Cruise ID: SP0901. 2009. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/901085
- Discipline:
- Science
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes scanning X-ray fluorescence (XRF) data for the core SPR0901-04BC (34.2816°N, 120.0415°W, 588 m water depth). SPR0901-04BC was collected by the research vessel R/V Sproul off Southern California in 2009.1. This research is funded by NSF OCE-0752093.
- Keyword:
- scanning X-ray fluorescence, XRF, Santa Barbara Basin, and SPR0901-04BC
- Citation to related publication:
- "Recover MT Receivers offshore Morro Bay/Deploy and Recover EM Sensor in the San Diego Trough." Cruise ID: SP0901. 2009. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/901085
- Discipline:
- Science
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for the box core SPR0901-unnamed (34.2816°N, 120.0415°W, 588 m water depth) measured on the multisensor track (MST). SPR0901-unnamed was collected by the research vessel R/V Sproul off Southern California in 2009.1.
- Keyword:
- physical properties, magnetic susceptibility, Santa Barbara Basin, and SPR0901-unnamed
- Citation to related publication:
- "Recover MT Receivers offshore Morro Bay/Deploy and Recover EM Sensor in the San Diego Trough." Cruise ID: SP0901. 2009. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/901085
- Discipline:
- Science
-
- Creator:
- Ingrid L. Hendy and Yi Wang
- Description:
- This dataset includes core physical properties (e.g., bulk density, porosity, P-wave velocity) and magnetic susceptibility data for the jumbo piston core MV0811-14JC (34.2818°N 120.0360°W, water depth: 582 m) measured on the multisensor track (MST). MV0811-14JC was collected by the research vessel R/V Melville off Southern California in 2008.11. The study is supported by NSF OCE-1304327.
- Keyword:
- physical properties, magnetic susceptibility, Santa Barbara Basin, and MV0811-14JC
- Citation to related publication:
- "BOLT Expedition, Leg 2/A Test for Extending the High-Resolution Climate Record Back to 1.2 Ma." Cruise ID: BOLT02MV. 2008. Accessible at Rolling Deck to Repository at https://doi.org/10.7284/903459
- Discipline:
- Science